Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001882

Physical Location & Seq

Genomic Coordinates Forward (+)

48429215 .. 48430555

Gene Structure 1341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G033040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGGGTGTAATTTGCACACCCCCTTTTACATTCTACACACCCTTCACCTTTTTTTAATATTTCTTATCATTCACTATATTTCTCTTCCAAAACTACCATTCTCTCTCTCTCTCTCTCTCTCCCTTCGATCCAAGTCTCAGACTCTCTCTCTCTCCAATTTGGGGCTTGAGAAACGGGAGAGATGCCTCACCGCCCAAACTACCCTCCGATCCAAACTACCCTTTTCTCTCTCTCCGCCTAGCGCCAAGCCTCTAATCGACGACTTCTCCCTCACCCTCAACGTCGGCGACCGATGCCTACTCCATGGTCAGGGTTCTGTGTCGCTCGGCTTTCCACGACACCACTCTCACGGCTTCGGCGACCTGTCGTACCTAAACGGAGAGTGGCGGCGTGACGTGGCGTTTGCTGGTTTCGACGTTTCTATACAGATGGATGTTTCGGCTGATAAATTGATCAACGGGGTAGCTGGCATTGACCCACAAAAGAGAGCTGAGCTGATCAAGGTGTTGGATATTGATCTTTCATGGAGGTTGCATAAGGTCTCAGATGGTCAGAGAAGAAGGGCCCAGATCTGTATGGATCTGCTCAAACCATATAAGGTGCTTTTGCTAGATGAGATCACGGTGGACCTTAATGTGTTAGCGAGGGCGGACCTGCTCCAGTTCTTGAGGAAGGAATGTGAGGAGCGAGGTGCTATGATCATTTACGCGACGCTATTTTCCAACATTGCCAAAGCAGCCAAATCGTCTTTCCCACCCGACAACACCCCAAATCGTCTTTCCCACCCGACAACACCAAGTGGTGCTGCTGCTGACTCAACCCGACCGAGTTCAGGTTCGGACCCTGCAAGTAACCAAGTAACTGAGCTTTCCACCGCAAAAGCAGGGAGACGACTCGATCATAGCCAAAGAATGTACTTGAATCGAAGTAGAGGTGGGAGTAGCTTGAGAAACGGGAGAGAGAAGAGTACCCATTTGGGAGCTTCGTTTTCTATGATTGTGGGAAGAAGGCGACGGCAGAGACGATATGGGCTGTGGCGACAGCGACACGTGCCGCGCTTGAGGTGCTCGGAGGCAGTTCTGGAGGGGTTTGAGGCCGAGAAAACGGTGTCGCAGGGAAGACACTTGAGCTTCACAGCTTTGGGGACGTTGGTGTTAGGGTTGCGAAGCATGACGGGCTCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

395

Amino Acids

44.0

Weight (kDa)

10.1

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02270 AT5G02270
fragaria_vesca	FvH4_6g08040
malus_domestica	MD03G1234700.v1.1 MD04G1190800.v1.1 MD12G1203100.v1.1
prunus_persica	Prupe.6G308800_v2.0.a1
pyrus_communis	pycom12g18950
rosa_chinensis	RchiOBHm_Chr2g0097941 RchiOBHm_Chr3g0457711 RchiOBHm_Chr5g0083331 RchiOBHm_Chr7g0234131
rosa_laevigata	RLG00000019926 RLG00000025192
rosa_multiflora	Rmu_sc0000566.1_g000046 Rmu_sc0001301.1_g000082 Rmu_sc0002068.1_g000007 Rmu_sc0004502.1_g000016 Rmu_sc0005743.1_g000009 Rmu_sc0007131.1_g000011 Rmu_sc0007395.1_g000002 Rmu_sc0028418.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370790 Rroxscaffold_6G00421550 Rroxscaffold_7G00180370
rosa_rugosa	Rorug03G0022700 Rorug05G0320000 Rorug06G0006300 Rorug06G0405000
rosa_samantha	Rh2AG292200 Rh2DG120300 Rh2DG432800 Rh3AG083500 Rh3BG086000 Rh3CG086300 Rh3DG086900 Rh4BG183300 Rh6BG113400 Rh6CG111600 Rh6DG101300 Rh7CG459900 Rh7DG392600 Rh7DG481700
rosa_wichuraiana	Rw3G007150 Rw5G007850 Rw7G033040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	663
AccII	CGCG	2 cut(s)	710, 1057
AciI	CCGC	6 cut(s)	192, 236, 388, 650, 876, 1055
AclWI	GGATC	3 cut(s)	123, 204, 588
AcvI	CACGTG	1 cut(s)	1051
AdeI	CACNNNGTG	1 cut(s)	800
AfaI	GTAC	3 cut(s)	371, 917, 970
AfiI	CCNNNNNNNGG	3 cut(s)	162, 310, 833
AflIII	ACRYGT	1 cut(s)	1048
AgsI	TTSAA	1 cut(s)	922
AjiI	CACGTC	1 cut(s)	397
AjuI	GAANNNNNNNTTGG	4 cut(s)	734, 763, 766, 795
AluBI	AGCT	8 cut(s)	467, 491, 496, 868, 945, 983, 1131, 1139
AluI	AGCT	8 cut(s)	467, 491, 496, 868, 945, 983, 1131, 1139
Alw21I	GWGCWC	1 cut(s)	1070
Alw26I	GTCTC	4 cut(s)	141, 547, 883, 1015
AlwI	GGATC	3 cut(s)	123, 204, 588
AoxI	GGCC	2 cut(s)	564, 1095
ApaI	GGGCCC	1 cut(s)	568
ApeKI	GCWGC	3 cut(s)	737, 806, 809
ArsI	GACNNNNNNTTYG	2 cut(s)	386, 418
AspLEI	GCGC	2 cut(s)	245, 1059
AspS9I	GGNCC	5 cut(s)	564, 565, 628, 652, 841
AsuHPI	GGTGA	3 cut(s)	38, 181, 265
AvaII	GGWCC	3 cut(s)	628, 652, 841
BaeGI	GKGCMC	1 cut(s)	568
BanII	GRGCYC	2 cut(s)	568, 1181
BbrPI	CACGTG	1 cut(s)	1051
BbsI	GAAGAC	1 cut(s)	1126
Bbv12I	GWGCWC	1 cut(s)	1070
BbvI	GCAGC	3 cut(s)	749, 793, 796
BccI	CCATC	2 cut(s)	424, 542
BceAI	ACGGC	2 cut(s)	367, 1031
BcgI	CGANNNNNNTGC	2 cut(s)	726, 760
BclI	TGATCA	3 cut(s)	453, 498, 699
BcoDI	GTCTC	4 cut(s)	141, 547, 883, 1015
BfaI	CTAG	2 cut(s)	240, 611
BfoI	RGCGCY	1 cut(s)	246
BfuAI	ACCTGC	1 cut(s)	663
BglII	AGATCT	1 cut(s)	570
BisI	GCNGC	5 cut(s)	389, 738, 807, 810, 1055
BlpI	GCTNAGC	1 cut(s)	492
BlsI	GCNGC	5 cut(s)	390, 739, 808, 811, 1056
Bme18I	GGWCC	3 cut(s)	628, 652, 841
BmgBI	CACGTC	1 cut(s)	397
BmgT120I	GGNCC	5 cut(s)	564, 565, 628, 652, 841
BmiI	GGNNCC	3 cut(s)	566, 843, 1180
BmsI	GCATC	2 cut(s)	173, 284
BpiI	GAAGAC	1 cut(s)	1126
BpmI	CTGGAG	2 cut(s)	644, 1103
Bpu1102I	GCTNAGC	1 cut(s)	492
BpuEI	CTTGAG	5 cut(s)	188, 688, 967, 1081, 1147
BsaAI	YACGTR	1 cut(s)	1051
BsaBI	GATNNNNATC	1 cut(s)	516
BsaI	GGTCTC	1 cut(s)	547
BsaJI	CCNNGG	1 cut(s)	304
BsaXI	ACNNNNNCTCC	2 cut(s)	251, 281
Bsc4I	CCNNNNNNNGG	3 cut(s)	162, 310, 833
Bse1I	ACTGG	1 cut(s)	661
Bse3DI	GCAATG	1 cut(s)	726
Bse8I	GATNNNNATC	1 cut(s)	516
BseDI	CCNNGG	1 cut(s)	304
BseGI	GGATG	1 cut(s)	439
BseJI	GATNNNNATC	1 cut(s)	516
BseLI	CCNNNNNNNGG	3 cut(s)	162, 310, 833
BseMI	GCAATG	1 cut(s)	726
BseMII	CTCAG	4 cut(s)	152, 483, 558, 855
BseNI	ACTGG	1 cut(s)	661
BseRI	GAGGAG	1 cut(s)	698
BseSI	GKGCMC	1 cut(s)	568
BseXI	GCAGC	3 cut(s)	749, 793, 796
Bsh1236I	CGCG	2 cut(s)	710, 1057
Bsh1285I	CGRYCG	2 cut(s)	292, 827
BshFI	GGCC	2 cut(s)	566, 1097
BsiEI	CGRYCG	2 cut(s)	292, 827
BsiHKAI	GWGCWC	1 cut(s)	1070
BslFI	GGGAC	1 cut(s)	1159
BslI	CCNNNNNNNGG	3 cut(s)	162, 310, 833
BsmAI	GTCTC	4 cut(s)	141, 547, 883, 1015
BsmBI	CGTCTC	2 cut(s)	883, 1015
BsmFI	GGGAC	1 cut(s)	1159
BsnI	GGCC	2 cut(s)	566, 1097
Bso31I	GGTCTC	1 cut(s)	547
Bsp120I	GGGCCC	1 cut(s)	564
Bsp1286I	GDGCHC	3 cut(s)	568, 1070, 1181
Bsp1720I	GCTNAGC	1 cut(s)	492
Bsp19I	CCATGG	1 cut(s)	304
BspACI	CCGC	6 cut(s)	192, 236, 388, 650, 876, 1055
BspANI	GGCC	2 cut(s)	566, 1097
BspCNI	CTCAG	4 cut(s)	151, 484, 557, 856
BspFNI	CGCG	2 cut(s)	710, 1057
BspLI	GGNNCC	3 cut(s)	566, 843, 1180
BspMI	ACCTGC	1 cut(s)	663
BspPI	GGATC	3 cut(s)	123, 204, 588
BspTNI	GGTCTC	1 cut(s)	547
BsrDI	GCAATG	1 cut(s)	726
BsrI	ACTGG	1 cut(s)	661
BssECI	CCNNGG	1 cut(s)	304
BssT1I	CCWWGG	1 cut(s)	304
Bst4CI	ACNGT	2 cut(s)	625, 1108
Bst6I	CTCTTC	2 cut(s)	90, 959
BstBAI	YACGTR	1 cut(s)	1051
BstC8I	GCNNGC	1 cut(s)	469
BstDEI	CTNAG	4 cut(s)	138, 492, 544, 864
BstDSI	CCRYGG	1 cut(s)	304
BstF5I	GGATG	1 cut(s)	439
BstFNI	CGCG	2 cut(s)	710, 1057
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	2 cut(s)	245, 1059
BstMAI	GTCTC	4 cut(s)	141, 547, 883, 1015
BstMCI	CGRYCG	2 cut(s)	292, 827
BstMWI	GCNNNNNNNGC	5 cut(s)	294, 737, 1051, 1065, 1176
BstSLI	GKGCMC	1 cut(s)	568
BstUI	CGCG	2 cut(s)	710, 1057
BstV1I	GCAGC	3 cut(s)	749, 793, 796
BstV2I	GAAGAC	1 cut(s)	1126
BstX2I	RGATCY	2 cut(s)	570, 580
BstYI	RGATCY	2 cut(s)	570, 580
BsuRI	GGCC	2 cut(s)	566, 1097
BtgI	CCRYGG	1 cut(s)	304
BtrI	CACGTC	1 cut(s)	397
BtsCI	GGATG	1 cut(s)	439
BveI	ACCTGC	1 cut(s)	663
Cac8I	GCNNGC	1 cut(s)	469
CfoI	GCGC	2 cut(s)	245, 1059
Cfr13I	GGNCC	5 cut(s)	564, 565, 628, 652, 841
CseI	GACGC	1 cut(s)	721
Csp6I	GTAC	3 cut(s)	370, 916, 969
CviAII	CATG	3 cut(s)	305, 525, 1171
CviQI	GTAC	3 cut(s)	370, 916, 969
DdeI	CTNAG	4 cut(s)	138, 492, 544, 864
DraIII	CACNNNGTG	1 cut(s)	800
Eam1104I	CTCTTC	2 cut(s)	90, 959
EarI	CTCTTC	2 cut(s)	90, 959
EciI	GGCGGA	2 cut(s)	225, 665
Eco130I	CCWWGG	1 cut(s)	304
Eco24I	GRGCYC	2 cut(s)	568, 1181
Eco31I	GGTCTC	1 cut(s)	547
Eco47I	GGWCC	3 cut(s)	628, 652, 841
Eco72I	CACGTG	1 cut(s)	1051
EcoO109I	RGGNCCY	1 cut(s)	564
EcoT14I	CCWWGG	1 cut(s)	304
EcoT38I	GRGCYC	2 cut(s)	568, 1181
ErhI	CCWWGG	1 cut(s)	304
Esp3I	CGTCTC	2 cut(s)	883, 1015
FaeI	CATG	3 cut(s)	308, 528, 1174
FaqI	GGGAC	1 cut(s)	1159
FatI	CATG	3 cut(s)	304, 524, 1170
FbaI	TGATCA	3 cut(s)	453, 498, 699
Fnu4HI	GCNGC	5 cut(s)	389, 738, 807, 810, 1055
FokI	GGATG	1 cut(s)	446
FriOI	GRGCYC	2 cut(s)	568, 1181
Fsp4HI	GCNGC	5 cut(s)	389, 738, 807, 810, 1055
FspBI	CTAG	2 cut(s)	240, 611
GlaI	GCGC	2 cut(s)	244, 1058
GluI	GCNGC	5 cut(s)	389, 738, 807, 810, 1055
GsuI	CTGGAG	2 cut(s)	644, 1103
HaeII	RGCGCY	1 cut(s)	246
HaeIII	GGCC	2 cut(s)	566, 1097
HgaI	GACGC	1 cut(s)	721
HhaI	GCGC	2 cut(s)	245, 1059
Hin1II	CATG	3 cut(s)	308, 528, 1174
Hin6I	GCGC	2 cut(s)	243, 1057
HinP1I	GCGC	2 cut(s)	243, 1057
HinfI	GANTC	4 cut(s)	142, 815, 894, 922
HphI	GGTGA	3 cut(s)	38, 181, 265
Hpy166II	GTNNAC	1 cut(s)	628
Hpy188I	TCNGA	6 cut(s)	141, 209, 547, 555, 841, 1072
Hpy188III	TCNNGA	2 cut(s)	667, 1082
Hpy8I	GTNNAC	1 cut(s)	628
Hpy99I	CGWCG	5 cut(s)	263, 287, 419, 715, 1017
HpyAV	CCTTC	5 cut(s)	53, 134, 555, 667, 1002
HpyCH4III	ACNGT	2 cut(s)	625, 1108
HpyCH4IV	ACGT	5 cut(s)	282, 396, 417, 1050, 1148
HpyCH4V	TGCA	3 cut(s)	16, 535, 848
HpyF10VI	GCNNNNNNNGC	5 cut(s)	294, 737, 1051, 1065, 1176
HpyF3I	CTNAG	4 cut(s)	138, 492, 544, 864
HpySE526I	ACGT	5 cut(s)	282, 396, 417, 1050, 1148
Hsp92II	CATG	3 cut(s)	308, 528, 1174
HspAI	GCGC	2 cut(s)	243, 1057
Ksp22I	TGATCA	3 cut(s)	453, 498, 699
LmnI	GCTCC	4 cut(s)	663, 685, 980, 1184
Lsp1109I	GCAGC	3 cut(s)	749, 793, 796
LweI	GCATC	2 cut(s)	173, 284
MaeI	CTAG	2 cut(s)	240, 611
MaeII	ACGT	5 cut(s)	282, 396, 417, 1050, 1148
MaeIII	GTNAC	3 cut(s)	392, 851, 859
MboII	GAAGA	5 cut(s)	77, 570, 976, 1017, 1131
MflI	RGATCY	2 cut(s)	570, 580
MhlI	GDGCHC	3 cut(s)	568, 1070, 1181
MluCI	AATT	3 cut(s)	10, 157, 449
MlyI	GAGTC	3 cut(s)	136, 809, 888
MmeI	TCCRAC	2 cut(s)	489, 747
MseI	TTAA	2 cut(s)	56, 633
MvnI	CGCG	2 cut(s)	710, 1057
MwoI	GCNNNNNNNGC	5 cut(s)	294, 737, 1051, 1065, 1176
NcoI	CCATGG	1 cut(s)	304
NlaIII	CATG	3 cut(s)	308, 528, 1174
NlaIV	GGNNCC	3 cut(s)	566, 843, 1180
NmeAIII	GCCGAG	2 cut(s)	306, 1123
NmuCI	GTSAC	1 cut(s)	392
PcsI	WCGNNNNNNNCGW	2 cut(s)	357, 1021
PfeI	GAWTC	1 cut(s)	922
PkrI	GCNGC	5 cut(s)	390, 739, 808, 811, 1056
PleI	GAGTC	3 cut(s)	136, 809, 888
PmaCI	CACGTG	1 cut(s)	1051
PmlI	CACGTG	1 cut(s)	1051
PpsI	GAGTC	3 cut(s)	136, 809, 888
Ppu21I	YACGTR	1 cut(s)	1051
PspCI	CACGTG	1 cut(s)	1051
PspN4I	GGNNCC	3 cut(s)	566, 843, 1180
PspOMI	GGGCCC	1 cut(s)	564
PspPI	GGNCC	5 cut(s)	564, 565, 628, 652, 841
PsuI	RGATCY	2 cut(s)	570, 580
RsaI	GTAC	3 cut(s)	371, 917, 970
RsaNI	GTAC	3 cut(s)	370, 916, 969
SaqAI	TTAA	2 cut(s)	56, 633
SatI	GCNGC	5 cut(s)	389, 738, 807, 810, 1055
Sau96I	GGNCC	5 cut(s)	564, 565, 628, 652, 841
SchI	GAGTC	3 cut(s)	136, 809, 888
SduI	GDGCHC	3 cut(s)	568, 1070, 1181
SfaNI	GCATC	2 cut(s)	173, 284
SinI	GGWCC	3 cut(s)	628, 652, 841
SmlI	CTYRAG	5 cut(s)	167, 667, 946, 1060, 1126
SmoI	CTYRAG	5 cut(s)	167, 667, 946, 1060, 1126
Sse9I	AATT	3 cut(s)	10, 157, 449
SsiI	CCGC	6 cut(s)	192, 236, 388, 650, 876, 1055
SspI	AATATT	1 cut(s)	60
SspMI	CTAG	2 cut(s)	240, 611
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	2 cut(s)	625, 1108
TaiI	ACGT	5 cut(s)	285, 399, 420, 1053, 1151
TaqI	TCGA	5 cut(s)	127, 258, 414, 897, 925
TaqII	GACCGA	2 cut(s)	306, 841
TasI	AATT	3 cut(s)	10, 157, 449
TatI	WGTACW	1 cut(s)	915
TauI	GCSGC	2 cut(s)	391, 1057
TfiI	GAWTC	1 cut(s)	922
Tru1I	TTAA	2 cut(s)	56, 633
Tru9I	TTAA	2 cut(s)	56, 633
TseFI	GTSAC	1 cut(s)	392
TseI	GCWGC	3 cut(s)	737, 806, 809
Tsp45I	GTSAC	1 cut(s)	392
TspDTI	ATGAA	1 cut(s)	513
TspGWI	ACGGA	1 cut(s)	393
VpaK11BI	GGWCC	3 cut(s)	628, 652, 841
XspI	CTAG	2 cut(s)	240, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.