Rw3G007150

ABC transporter I family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0001882
Physical Location & Seq
Forward (+)
6609287 .. 6611025
1739 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G007150.1

Sequence Viewer

Length: 750 bp
ATGGTCGACCCCAGCATGGTCCGCGTTCTGGGTCGGTCCGCTTTCCACGACACCGCTCTCACCGGCTCCGGCGACCTGTCGTATCTCGGCGGAGAGTGGCGGCGTGACGTGGCGTTCGCCGGGTTCGACGTTCCGATACAGATGGATGTTTCGGCTGATAAATTGATTAACGGGGTGGCTGGGATTGACCCACAAAGGAGAGCTGAGCTGATCAAGGTGTTGGATATTGATCTTTCTTGGAGGTTGCACAAGGTCTCAGATGGTCAGAGAAGAAGGGTCCAGATCTGTATGGGTCTGCTCAGACCATATAAGGTGCTTCTGCTTGATGAGATCACAGTGGACCTTGATGTGCTAGCGAGGGCGGACCTTCTCCAGTTCTTGAGGAAGGAATGTGAGGAGCGAGGTGCTACGATCATTTACGCGACGCATATCTTCGACGGGTTGGAGAATTGGCCATCACACATTGTGTATGTTGCTAATGGGAAGCTGCAATTGTCAATGCCGATGGACAAGGTTAGGGAGACGTACAAGCTGTCGCTCATGAGAACAGTTGAGAGTTGGCTGAGGAAGGAGCGCGAGGAGGAGAGGGCGAGAAGAAAAGAGAGGAAGGCAAGAGGTCTTCCCGAGTTTGATGAACAAATTGAGGGCAACCGTGTGATTAATAATGGTTGGGCGGCCGGGCGCCTCAACTCCACCGTCGCCGGAGAAGAAAACTTTGTGTGGAGCTCAAACAGAGTTCTCAGGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
ABC_tran

Protein Analysis

249

Amino Acids

28.52

Weight (kDa)

7.79

Isoelectric Point (pI)

43.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_21 PF13304 80 - 143 7.1e-09 AAA domain, putative AbiEii toxin, Type IV TA system
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 681
AccBSI CCGCTC 1 cut(s) 56
AccI GTMKAC 1 cut(s) 6
AccII CGCG 3 cut(s) 24, 422, 576
AciI CCGC 7 cut(s) 22, 39, 54, 90, 100, 362, 674
AcoI YGGCCR 2 cut(s) 452, 675
AcyI GRCGYC 1 cut(s) 682
AdeI CACNNNGTG 1 cut(s) 466
AfaI GTAC 1 cut(s) 527
AfiI CCNNNNNNNGG 2 cut(s) 16, 28
AjiI CACGTC 1 cut(s) 109
AluBI AGCT 5 cut(s) 203, 208, 487, 532, 726
AluI AGCT 5 cut(s) 203, 208, 487, 532, 726
Alw21I GWGCWC 1 cut(s) 728
Alw26I GTCTC 2 cut(s) 259, 515
Ama87I CYCGRG 1 cut(s) 623
AoxI GGCC 2 cut(s) 452, 675
ApeKI GCWGC 1 cut(s) 487
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
AseI ATTAAT 1 cut(s) 660
AspLEI GCGC 2 cut(s) 576, 684
AspS9I GGNCC 5 cut(s) 19, 36, 277, 340, 364
AsuC2I CCSGG 2 cut(s) 121, 679
AsuHPI GGTGA 1 cut(s) 52
AsuNHI GCTAGC 1 cut(s) 352
AvaI CYCGRG 1 cut(s) 623
AvaII GGWCC 5 cut(s) 19, 36, 277, 340, 364
BalI TGGCCA 1 cut(s) 454
BanI GGYRCC 1 cut(s) 681
BanII GRGCYC 1 cut(s) 728
BbsI GAAGAC 1 cut(s) 611
Bbv12I GWGCWC 1 cut(s) 728
BbvCI CCTCAGC 1 cut(s) 563
BbvI GCAGC 1 cut(s) 474
BccI CCATC 4 cut(s) 136, 254, 463, 499
BclI TGATCA 1 cut(s) 210
BcnI CCSGG 2 cut(s) 121, 679
BcoDI GTCTC 2 cut(s) 259, 515
BfaI CTAG 1 cut(s) 353
BfoI RGCGCY 1 cut(s) 685
BglII AGATCT 1 cut(s) 282
BisI GCNGC 3 cut(s) 101, 488, 675
BlpI GCTNAGC 1 cut(s) 204
BlsI GCNGC 3 cut(s) 102, 489, 676
Bme1390I CCNGG 2 cut(s) 121, 679
Bme18I GGWCC 5 cut(s) 19, 36, 277, 340, 364
BmeT110I CYCGRG 1 cut(s) 623
BmgBI CACGTC 1 cut(s) 109
BmgT120I GGNCC 5 cut(s) 19, 36, 277, 340, 364
BmiI GGNNCC 3 cut(s) 67, 278, 683
BmrFI CCNGG 2 cut(s) 121, 679
BmtI GCTAGC 1 cut(s) 356
BpiI GAAGAC 1 cut(s) 611
BpmI CTGGAG 1 cut(s) 356
Bpu10I CCTNAGC 1 cut(s) 563
Bpu1102I GCTNAGC 1 cut(s) 204
BpuEI CTTGAG 1 cut(s) 400
BpuMI CCSGG 2 cut(s) 121, 679
BsaBI GATNNNNATC 1 cut(s) 228
BsaHI GRCGYC 1 cut(s) 682
BsaI GGTCTC 1 cut(s) 259
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 28
Bse118I RCCGGY 1 cut(s) 62
Bse1I ACTGG 1 cut(s) 373
Bse8I GATNNNNATC 1 cut(s) 228
BseGI GGATG 1 cut(s) 151
BseJI GATNNNNATC 1 cut(s) 228
BseLI CCNNNNNNNGG 2 cut(s) 16, 28
BseMII CTCAG 4 cut(s) 195, 270, 313, 554
BseNI ACTGG 1 cut(s) 373
BseRI GAGGAG 3 cut(s) 410, 593, 596
BseX3I CGGCCG 1 cut(s) 675
BseXI GCAGC 1 cut(s) 474
BseYI CCCAGC 2 cut(s) 11, 179
Bsh1236I CGCG 3 cut(s) 24, 422, 576
Bsh1285I CGRYCG 1 cut(s) 678
BshFI GGCC 2 cut(s) 454, 677
BshNI GGYRCC 1 cut(s) 681
BsiEI CGRYCG 1 cut(s) 678
BsiHKAI GWGCWC 1 cut(s) 728
BsiHKCI CYCGRG 1 cut(s) 623
BsiSI CCGG 5 cut(s) 63, 69, 120, 678, 702
BslI CCNNNNNNNGG 2 cut(s) 16, 28
BsmAI GTCTC 2 cut(s) 259, 515
BsmBI CGTCTC 1 cut(s) 515
BsnI GGCC 2 cut(s) 454, 677
Bso31I GGTCTC 1 cut(s) 259
BsoBI CYCGRG 1 cut(s) 623
Bsp1286I GDGCHC 1 cut(s) 728
Bsp143I GATC 5 cut(s) 210, 229, 282, 330, 411
Bsp1720I GCTNAGC 1 cut(s) 204
BspACI CCGC 7 cut(s) 22, 39, 54, 90, 100, 362, 674
BspANI GGCC 2 cut(s) 454, 677
BspCNI CTCAG 4 cut(s) 196, 269, 312, 555
BspFNI CGCG 3 cut(s) 24, 422, 576
BspHI TCATGA 1 cut(s) 540
BspLI GGNNCC 3 cut(s) 67, 278, 683
BspOI GCTAGC 1 cut(s) 356
BspT107I GGYRCC 1 cut(s) 681
BspTNI GGTCTC 1 cut(s) 259
BsrBI CCGCTC 1 cut(s) 56
BsrFI RCCGGY 1 cut(s) 62
BsrI ACTGG 1 cut(s) 373
BssAI RCCGGY 1 cut(s) 62
BssMI GATC 5 cut(s) 210, 229, 282, 330, 411
BssNI GRCGYC 1 cut(s) 682
Bst4CI ACNGT 4 cut(s) 337, 550, 653, 697
BstACI GRCGYC 1 cut(s) 682
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 5 cut(s) 204, 256, 299, 563, 740
BstF5I GGATG 1 cut(s) 151
BstFNI CGCG 3 cut(s) 24, 422, 576
BstH2I RGCGCY 1 cut(s) 685
BstHHI GCGC 2 cut(s) 576, 684
BstKTI GATC 5 cut(s) 213, 232, 285, 333, 414
BstMAI GTCTC 2 cut(s) 259, 515
BstMBI GATC 5 cut(s) 210, 229, 282, 330, 411
BstMCI CGRYCG 1 cut(s) 678
BstMWI GCNNNNNNNGC 1 cut(s) 21
BstSCI CCNGG 2 cut(s) 119, 677
BstUI CGCG 3 cut(s) 24, 422, 576
BstV1I GCAGC 1 cut(s) 474
BstV2I GAAGAC 1 cut(s) 611
BstX2I RGATCY 1 cut(s) 282
BstYI RGATCY 1 cut(s) 282
BstZI CGGCCG 1 cut(s) 675
BsuRI GGCC 2 cut(s) 454, 677
BtrI CACGTC 1 cut(s) 109
BtsCI GGATG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 342
Cac8I GCNNGC 1 cut(s) 354
CciI TCATGA 1 cut(s) 540
CfoI GCGC 2 cut(s) 576, 684
Cfr10I RCCGGY 1 cut(s) 62
Cfr13I GGNCC 5 cut(s) 19, 36, 277, 340, 364
CpoI CGGWCCG 1 cut(s) 36
CseI GACGC 1 cut(s) 433
Csp6I GTAC 1 cut(s) 526
CspI CGGWCCG 1 cut(s) 36
CviAII CATG 2 cut(s) 16, 541
CviQI GTAC 1 cut(s) 526
DdeI CTNAG 5 cut(s) 204, 256, 299, 563, 740
DinI GGCGCC 1 cut(s) 683
DpnI GATC 5 cut(s) 212, 231, 284, 332, 413
DpnII GATC 5 cut(s) 210, 229, 282, 330, 411
DraIII CACNNNGTG 1 cut(s) 466
EaeI YGGCCR 2 cut(s) 452, 675
EagI CGGCCG 1 cut(s) 675
EciI GGCGGA 2 cut(s) 105, 377
Ecl136II GAGCTC 1 cut(s) 726
EclXI CGGCCG 1 cut(s) 675
Eco24I GRGCYC 1 cut(s) 728
Eco31I GGTCTC 1 cut(s) 259
Eco47I GGWCC 5 cut(s) 19, 36, 277, 340, 364
Eco52I CGGCCG 1 cut(s) 675
Eco53kI GAGCTC 1 cut(s) 726
Eco88I CYCGRG 1 cut(s) 623
EcoICRI GAGCTC 1 cut(s) 726
EcoT38I GRGCYC 1 cut(s) 728
EgeI GGCGCC 1 cut(s) 683
EheI GGCGCC 1 cut(s) 683
Esp3I CGTCTC 1 cut(s) 515
FaeI CATG 2 cut(s) 19, 544
FaiI YATR 7 cut(s) 17, 290, 307, 309, 429, 471, 542
FatI CATG 2 cut(s) 15, 540
FbaI TGATCA 1 cut(s) 210
FblI GTMKAC 1 cut(s) 6
Fnu4HI GCNGC 3 cut(s) 101, 488, 675
FokI GGATG 1 cut(s) 158
FriOI GRGCYC 1 cut(s) 728
Fsp4HI GCNGC 3 cut(s) 101, 488, 675
FspBI CTAG 1 cut(s) 353
GlaI GCGC 2 cut(s) 575, 683
GluI GCNGC 3 cut(s) 101, 488, 675
GsaI CCCAGC 2 cut(s) 15, 183
GsuI CTGGAG 1 cut(s) 356
HaeII RGCGCY 1 cut(s) 685
HaeIII GGCC 2 cut(s) 454, 677
HapII CCGG 5 cut(s) 63, 69, 120, 678, 702
HgaI GACGC 1 cut(s) 433
HhaI GCGC 2 cut(s) 576, 684
Hin1I GRCGYC 1 cut(s) 682
Hin1II CATG 2 cut(s) 19, 544
Hin6I GCGC 2 cut(s) 574, 682
HinP1I GCGC 2 cut(s) 574, 682
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HpaII CCGG 5 cut(s) 63, 69, 120, 678, 702
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 2 cut(s) 7, 340
Hpy188I TCNGA 4 cut(s) 135, 259, 267, 302
Hpy188III TCNNGA 4 cut(s) 280, 379, 541, 623
Hpy8I GTNNAC 2 cut(s) 7, 340
Hpy99I CGWCG 4 cut(s) 131, 427, 440, 701
HpyAV CCTTC 5 cut(s) 267, 377, 379, 562, 601
HpyCH4III ACNGT 4 cut(s) 337, 550, 653, 697
HpyCH4IV ACGT 3 cut(s) 108, 129, 524
HpyCH4V TGCA 2 cut(s) 247, 490
HpyF10VI GCNNNNNNNGC 1 cut(s) 21
HpyF3I CTNAG 5 cut(s) 204, 256, 299, 563, 740
HpySE526I ACGT 3 cut(s) 108, 129, 524
Hsp92I GRCGYC 1 cut(s) 682
Hsp92II CATG 2 cut(s) 19, 544
HspAI GCGC 2 cut(s) 574, 682
KasI GGCGCC 1 cut(s) 681
Ksp22I TGATCA 1 cut(s) 210
Kzo9I GATC 5 cut(s) 210, 229, 282, 330, 411
LmnI GCTCC 4 cut(s) 71, 397, 571, 723
Lsp1109I GCAGC 1 cut(s) 474
MaeI CTAG 1 cut(s) 353
MaeII ACGT 3 cut(s) 108, 129, 524
MaeIII GTNAC 1 cut(s) 104
MalI GATC 5 cut(s) 212, 231, 284, 332, 413
MbiI CCGCTC 1 cut(s) 56
MboI GATC 5 cut(s) 210, 229, 282, 330, 411
MboII GAAGA 5 cut(s) 282, 424, 606, 611, 719
MfeI CAATTG 1 cut(s) 491
MflI RGATCY 1 cut(s) 282
MhlI GDGCHC 1 cut(s) 728
MlsI TGGCCA 1 cut(s) 454
MluCI AATT 4 cut(s) 161, 448, 491, 639
MluNI TGGCCA 1 cut(s) 454
Mly113I GGCGCC 1 cut(s) 682
MmeI TCCRAC 2 cut(s) 201, 423
Mox20I TGGCCA 1 cut(s) 454
MscI TGGCCA 1 cut(s) 454
MseI TTAA 2 cut(s) 168, 660
Msp20I TGGCCA 1 cut(s) 454
MspI CCGG 5 cut(s) 63, 69, 120, 678, 702
MspR9I CCNGG 2 cut(s) 121, 679
MunI CAATTG 1 cut(s) 491
MvnI CGCG 3 cut(s) 24, 422, 576
MwoI GCNNNNNNNGC 1 cut(s) 21
NarI GGCGCC 1 cut(s) 682
NciI CCSGG 2 cut(s) 121, 679
NdeII GATC 5 cut(s) 210, 229, 282, 330, 411
NheI GCTAGC 1 cut(s) 352
NlaIII CATG 2 cut(s) 19, 544
NlaIV GGNNCC 3 cut(s) 67, 278, 683
NmeAIII GCCGAG 1 cut(s) 66
NmuCI GTSAC 1 cut(s) 104
PagI TCATGA 1 cut(s) 540
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PkrI GCNGC 3 cut(s) 102, 489, 676
PluTI GGCGCC 1 cut(s) 685
PshBI ATTAAT 1 cut(s) 660
Psp124BI GAGCTC 1 cut(s) 728
PspFI CCCAGC 2 cut(s) 11, 179
PspN4I GGNNCC 3 cut(s) 67, 278, 683
PspPI GGNCC 5 cut(s) 19, 36, 277, 340, 364
PsuI RGATCY 1 cut(s) 282
RsaI GTAC 1 cut(s) 527
RsaNI GTAC 1 cut(s) 526
Rsr2I CGGWCCG 1 cut(s) 36
RsrII CGGWCCG 1 cut(s) 36
SacI GAGCTC 1 cut(s) 728
SalI GTCGAC 1 cut(s) 5
SaqAI TTAA 2 cut(s) 168, 660
SatI GCNGC 3 cut(s) 101, 488, 675
Sau3AI GATC 5 cut(s) 210, 229, 282, 330, 411
Sau96I GGNCC 5 cut(s) 19, 36, 277, 340, 364
ScrFI CCNGG 2 cut(s) 121, 679
SduI GDGCHC 1 cut(s) 728
SfoI GGCGCC 1 cut(s) 683
SinI GGWCC 5 cut(s) 19, 36, 277, 340, 364
SmlI CTYRAG 1 cut(s) 379
SmoI CTYRAG 1 cut(s) 379
Sse9I AATT 4 cut(s) 161, 448, 491, 639
SsiI CCGC 7 cut(s) 22, 39, 54, 90, 100, 362, 674
SspDI GGCGCC 1 cut(s) 681
SspMI CTAG 1 cut(s) 353
SstI GAGCTC 1 cut(s) 728
StyD4I CCNGG 2 cut(s) 119, 677
TaaI ACNGT 4 cut(s) 337, 550, 653, 697
TaiI ACGT 3 cut(s) 111, 132, 527
TaqI TCGA 3 cut(s) 6, 126, 435
TaqII GACCGA 1 cut(s) 24
TasI AATT 4 cut(s) 161, 448, 491, 639
TauI GCSGC 2 cut(s) 103, 677
Tru1I TTAA 2 cut(s) 168, 660
Tru9I TTAA 2 cut(s) 168, 660
TscAI CASTG 1 cut(s) 342
TseFI GTSAC 1 cut(s) 104
TseI GCWGC 1 cut(s) 487
Tsp45I GTSAC 1 cut(s) 104
TspDTI ATGAA 1 cut(s) 648
TspRI CASTG 1 cut(s) 342
VpaK11BI GGWCC 5 cut(s) 19, 36, 277, 340, 364
VspI ATTAAT 1 cut(s) 660
XmiI GTMKAC 1 cut(s) 6
XspI CTAG 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.