Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001882

Physical Location & Seq

Genomic Coordinates Reverse (-)

35958928 .. 35962481

Gene Structure 3554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG292200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGATCCTCAGGATTCTCGGAGGTAAGCACATGGTCGACCCCAGCATGGTCCGGTTTCTGGGTCGCTCGGCTTTCCACGACACCGCTCTCACCGGCTTCGGCGATCTGTCGTACCTAGGCGGAGAGTGGCGGCGTGACGTGGCGTTTGTTGGTTTCGACGTTCCGATACAGATGGATGTTTCGGCTGATAAATTGATCAACGGGGTAGCTGGGATTGACCCACAAAGGAGAGCTGAGCTGATCAAGGTGTTGGATATTGATCTTTCATGGAGAACTGCGGTGATGGCAAAATGGAGTGTGGACACGAGCAAATCCAAGAAGGCGCTGCAATTGGCCGAGTACCCGAATAAAGAGGATCTGGACTTCGTGCTCCTGATACTGGACTCTTTCCTTCCGATCGTCTTCACTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

137

Amino Acids

15.27

Weight (kDa)

5.61

Isoelectric Point (pI)

29.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02270 AT5G02270
fragaria_vesca	FvH4_6g08040
malus_domestica	MD03G1234700.v1.1 MD04G1190800.v1.1 MD12G1203100.v1.1
prunus_persica	Prupe.6G308800_v2.0.a1
pyrus_communis	pycom12g18950
rosa_chinensis	RchiOBHm_Chr2g0097941 RchiOBHm_Chr3g0457711 RchiOBHm_Chr5g0083331 RchiOBHm_Chr7g0234131
rosa_laevigata	RLG00000019926 RLG00000025192
rosa_multiflora	Rmu_sc0000566.1_g000046 Rmu_sc0001301.1_g000082 Rmu_sc0002068.1_g000007 Rmu_sc0004502.1_g000016 Rmu_sc0005743.1_g000009 Rmu_sc0007131.1_g000011 Rmu_sc0007395.1_g000002 Rmu_sc0028418.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370790 Rroxscaffold_6G00421550 Rroxscaffold_7G00180370
rosa_rugosa	Rorug03G0022700 Rorug05G0320000 Rorug06G0006300 Rorug06G0405000
rosa_samantha	Rh2AG292200 Rh2DG120300 Rh2DG432800 Rh3AG083500 Rh3BG086000 Rh3CG086300 Rh3DG086900 Rh4BG183300 Rh6BG113400 Rh6CG111600 Rh6DG101300 Rh7CG459900 Rh7DG392600 Rh7DG481700
rosa_wichuraiana	Rw3G007150 Rw5G007850 Rw7G033040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	86
AccI	GTMKAC	1 cut(s)	36
AciI	CCGC	4 cut(s)	84, 120, 130, 278
AclWI	GGATC	1 cut(s)	363
AcoI	YGGCCR	1 cut(s)	333
AfaI	GTAC	2 cut(s)	113, 341
AfiI	CCNNNNNNNGG	3 cut(s)	46, 58, 379
AjiI	CACGTC	1 cut(s)	139
AluBI	AGCT	3 cut(s)	209, 233, 238
AluI	AGCT	3 cut(s)	209, 233, 238
Alw21I	GWGCWC	1 cut(s)	372
AlwI	GGATC	1 cut(s)	363
AoxI	GGCC	1 cut(s)	333
ApeKI	GCWGC	1 cut(s)	325
ArsI	GACNNNNNNTTYG	2 cut(s)	128, 160
AspA2I	CCTAGG	1 cut(s)	115
AspLEI	GCGC	1 cut(s)	325
AspS9I	GGNCC	1 cut(s)	49
AsuHPI	GGTGA	2 cut(s)	82, 292
AvaII	GGWCC	1 cut(s)	49
AvrII	CCTAGG	1 cut(s)	115
AxyI	CCTNAGG	1 cut(s)	8
BauI	CACGAG	1 cut(s)	304
BbsI	GAAGAC	1 cut(s)	394
Bbv12I	GWGCWC	1 cut(s)	372
BbvI	GCAGC	1 cut(s)	312
BccI	CCATC	2 cut(s)	166, 277
BclI	TGATCA	2 cut(s)	195, 240
BfaI	CTAG	1 cut(s)	116
BfoI	RGCGCY	1 cut(s)	326
BisI	GCNGC	2 cut(s)	131, 326
BlnI	CCTAGG	1 cut(s)	115
BlpI	GCTNAGC	1 cut(s)	234
BlsI	GCNGC	2 cut(s)	132, 327
Bme18I	GGWCC	1 cut(s)	49
BmgBI	CACGTC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	49
BpiI	GAAGAC	1 cut(s)	394
Bpu1102I	GCTNAGC	1 cut(s)	234
BsaBI	GATNNNNATC	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	115
BsaWI	WCCGGW	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 58, 379
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	2 cut(s)	384, 412
Bse21I	CCTNAGG	1 cut(s)	8
Bse8I	GATNNNNATC	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	115
BseGI	GGATG	1 cut(s)	181
BseJI	GATNNNNATC	1 cut(s)	258
BseLI	CCNNNNNNNGG	3 cut(s)	46, 58, 379
BseMII	CTCAG	2 cut(s)	22, 225
BseNI	ACTGG	2 cut(s)	384, 412
BseXI	GCAGC	1 cut(s)	312
BseYI	CCCAGC	2 cut(s)	41, 209
Bsh1285I	CGRYCG	1 cut(s)	399
BshFI	GGCC	1 cut(s)	335
BsiEI	CGRYCG	1 cut(s)	399
BsiHKAI	GWGCWC	1 cut(s)	372
BsiSI	CCGG	2 cut(s)	52, 93
BslI	CCNNNNNNNGG	3 cut(s)	46, 58, 379
BsnI	GGCC	1 cut(s)	335
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp143I	GATC	7 cut(s)	3, 103, 195, 240, 259, 355, 396
Bsp1720I	GCTNAGC	1 cut(s)	234
BspACI	CCGC	4 cut(s)	84, 120, 130, 278
BspANI	GGCC	1 cut(s)	335
BspCNI	CTCAG	2 cut(s)	21, 226
BspPI	GGATC	1 cut(s)	363
BsrBI	CCGCTC	1 cut(s)	86
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	2 cut(s)	384, 412
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	7 cut(s)	3, 103, 195, 240, 259, 355, 396
BssSI	CACGAG	1 cut(s)	304
BssT1I	CCWWGG	1 cut(s)	115
Bst2BI	CACGAG	1 cut(s)	304
BstDEI	CTNAG	2 cut(s)	8, 234
BstF5I	GGATG	1 cut(s)	181
BstH2I	RGCGCY	1 cut(s)	326
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	7 cut(s)	6, 106, 198, 243, 262, 358, 399
BstMBI	GATC	7 cut(s)	3, 103, 195, 240, 259, 355, 396
BstMCI	CGRYCG	1 cut(s)	399
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstV1I	GCAGC	1 cut(s)	312
BstV2I	GAAGAC	1 cut(s)	394
BstX2I	RGATCY	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	355
Bsu36I	CCTNAGG	1 cut(s)	8
BsuRI	GGCC	1 cut(s)	335
BtrI	CACGTC	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	181
BtsIMutI	CAGTG	1 cut(s)	405
CfoI	GCGC	1 cut(s)	325
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	49
Csp6I	GTAC	2 cut(s)	112, 340
CviAII	CATG	3 cut(s)	31, 46, 267
CviJI	RGCY	7 cut(s)	71, 96, 185, 209, 233, 238, 335
CviKI_1	RGCY	7 cut(s)	71, 96, 185, 209, 233, 238, 335
CviQI	GTAC	2 cut(s)	112, 340
DdeI	CTNAG	2 cut(s)	8, 234
DpnI	GATC	7 cut(s)	5, 105, 197, 242, 261, 357, 398
DpnII	GATC	7 cut(s)	3, 103, 195, 240, 259, 355, 396
EaeI	YGGCCR	1 cut(s)	333
EciI	GGCGGA	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	115
Eco47I	GGWCC	1 cut(s)	49
Eco81I	CCTNAGG	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	3 cut(s)	34, 49, 270
FaiI	YATR	3 cut(s)	32, 47, 268
FatI	CATG	3 cut(s)	30, 45, 266
FbaI	TGATCA	2 cut(s)	195, 240
FblI	GTMKAC	1 cut(s)	36
Fnu4HI	GCNGC	2 cut(s)	131, 326
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	2 cut(s)	131, 326
FspBI	CTAG	1 cut(s)	116
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	2 cut(s)	131, 326
GsaI	CCCAGC	2 cut(s)	45, 213
HaeII	RGCGCY	1 cut(s)	326
HaeIII	GGCC	1 cut(s)	335
HapII	CCGG	2 cut(s)	52, 93
HhaI	GCGC	1 cut(s)	325
Hin1II	CATG	3 cut(s)	34, 49, 270
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	2 cut(s)	13, 383
HpaII	CCGG	2 cut(s)	52, 93
HphI	GGTGA	2 cut(s)	82, 292
Hpy166II	GTNNAC	2 cut(s)	37, 301
Hpy188I	TCNGA	3 cut(s)	20, 165, 396
Hpy188III	TCNNGA	3 cut(s)	10, 359, 373
Hpy8I	GTNNAC	2 cut(s)	37, 301
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	2 cut(s)	313, 401
HpyCH4IV	ACGT	2 cut(s)	138, 159
HpyCH4V	TGCA	1 cut(s)	328
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	2 cut(s)	8, 234
HpySE526I	ACGT	2 cut(s)	138, 159
Hsp92II	CATG	3 cut(s)	34, 49, 270
HspAI	GCGC	1 cut(s)	323
Ksp22I	TGATCA	2 cut(s)	195, 240
Kzo9I	GATC	7 cut(s)	3, 103, 195, 240, 259, 355, 396
LmnI	GCTCC	1 cut(s)	375
LpnPI	CCDG	9 cut(s)	44, 55, 65, 106, 195, 344, 365, 386, 393
Lsp1109I	GCAGC	1 cut(s)	312
MaeI	CTAG	1 cut(s)	116
MaeII	ACGT	2 cut(s)	138, 159
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	7 cut(s)	5, 105, 197, 242, 261, 357, 398
MbiI	CCGCTC	1 cut(s)	86
MboI	GATC	7 cut(s)	3, 103, 195, 240, 259, 355, 396
MboII	GAAGA	1 cut(s)	394
MfeI	CAATTG	1 cut(s)	329
MflI	RGATCY	1 cut(s)	355
MhlI	GDGCHC	1 cut(s)	372
MluCI	AATT	2 cut(s)	191, 329
MlyI	GAGTC	1 cut(s)	377
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	3 cut(s)	14, 17, 346
MspI	CCGG	2 cut(s)	52, 93
MunI	CAATTG	1 cut(s)	329
MwoI	GCNNNNNNNGC	1 cut(s)	284
NdeII	GATC	7 cut(s)	3, 103, 195, 240, 259, 355, 396
NlaIII	CATG	3 cut(s)	34, 49, 270
NmeAIII	GCCGAG	2 cut(s)	47, 361
NmuCI	GTSAC	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	13
PkrI	GCNGC	2 cut(s)	132, 327
Ple19I	CGATCG	1 cut(s)	399
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
PspFI	CCCAGC	2 cut(s)	41, 209
PspPI	GGNCC	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	355
PvuI	CGATCG	1 cut(s)	399
RsaI	GTAC	2 cut(s)	113, 341
RsaNI	GTAC	2 cut(s)	112, 340
SalI	GTCGAC	1 cut(s)	35
SatI	GCNGC	2 cut(s)	131, 326
Sau3AI	GATC	7 cut(s)	3, 103, 195, 240, 259, 355, 396
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	1 cut(s)	377
SduI	GDGCHC	1 cut(s)	372
SetI	ASST	8 cut(s)	25, 117, 141, 162, 211, 235, 240, 249
SinI	GGWCC	1 cut(s)	49
Sse9I	AATT	2 cut(s)	191, 329
SsiI	CCGC	4 cut(s)	84, 120, 130, 278
SspMI	CTAG	1 cut(s)	116
StyI	CCWWGG	1 cut(s)	115
TaiI	ACGT	2 cut(s)	141, 162
TaqI	TCGA	2 cut(s)	36, 156
TasI	AATT	2 cut(s)	191, 329
TauI	GCSGC	1 cut(s)	133
TfiI	GAWTC	1 cut(s)	13
TscAI	CASTG	1 cut(s)	412
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	1 cut(s)	325
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	1 cut(s)	255
TspRI	CASTG	1 cut(s)	412
VpaK11BI	GGWCC	1 cut(s)	49
XmaJI	CCTAGG	1 cut(s)	115
XmiI	GTMKAC	1 cut(s)	36
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.