Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001882

Physical Location & Seq

Genomic Coordinates Reverse (-)

62589564 .. 62590043

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG432800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGATCCTCAGGATTCTCGGAGGCAAGCACATGGTCGACCCCAGCATGGTCCGGGTTCTGGGTCGCTCGGCTTTCCACGACACCGCTCTTACCGACTTCAGCGATCTGTCGTACCTAGGCGGAGAGTGGCGGCGTGACGTGGCGTTTGCTGGTTTCGACGTTCCGATACAGATGGATGTTTCGGCTGATAAATTGATCAACGGGGTAGCTGGGATTGACCCACAAAGGAGAGCTGAGCTGATCAAGGTGCTTCTGCTTGATGAGATCACGGTGGACCTTGATGTGCTAGTGAGGGCGGACCTGCTCCAGTTCTTGAGGAAGGAATGTAAGGAGCGAGGTGCTATGATCGTTTCTGAAGCCCCAAATTGGAGAGAGAGAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

127

Amino Acids

14.29

Weight (kDa)

5.35

Isoelectric Point (pI)

30.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02270 AT5G02270
fragaria_vesca	FvH4_6g08040
malus_domestica	MD03G1234700.v1.1 MD04G1190800.v1.1 MD12G1203100.v1.1
prunus_persica	Prupe.6G308800_v2.0.a1
pyrus_communis	pycom12g18950
rosa_chinensis	RchiOBHm_Chr2g0097941 RchiOBHm_Chr3g0457711 RchiOBHm_Chr5g0083331 RchiOBHm_Chr7g0234131
rosa_laevigata	RLG00000019926 RLG00000025192
rosa_multiflora	Rmu_sc0000566.1_g000046 Rmu_sc0001301.1_g000082 Rmu_sc0002068.1_g000007 Rmu_sc0004502.1_g000016 Rmu_sc0005743.1_g000009 Rmu_sc0007131.1_g000011 Rmu_sc0007395.1_g000002 Rmu_sc0028418.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370790 Rroxscaffold_6G00421550 Rroxscaffold_7G00180370
rosa_rugosa	Rorug03G0022700 Rorug05G0320000 Rorug06G0006300 Rorug06G0405000
rosa_samantha	Rh2AG292200 Rh2DG120300 Rh2DG432800 Rh3AG083500 Rh3BG086000 Rh3CG086300 Rh3DG086900 Rh4BG183300 Rh6BG113400 Rh6CG111600 Rh6DG101300 Rh7CG459900 Rh7DG392600 Rh7DG481700
rosa_wichuraiana	Rw3G007150 Rw5G007850 Rw7G033040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	309
AccBSI	CCGCTC	1 cut(s)	86
AccI	GTMKAC	1 cut(s)	36
AciI	CCGC	4 cut(s)	84, 120, 130, 296
AcuI	CTGAAG	2 cut(s)	82, 375
AfaI	GTAC	1 cut(s)	113
AfiI	CCNNNNNNNGG	3 cut(s)	46, 58, 366
AjiI	CACGTC	1 cut(s)	139
AluBI	AGCT	3 cut(s)	209, 233, 238
AluI	AGCT	3 cut(s)	209, 233, 238
ArsI	GACNNNNNNTTYG	2 cut(s)	128, 160
AspA2I	CCTAGG	1 cut(s)	115
AspS9I	GGNCC	3 cut(s)	49, 274, 298
AsuC2I	CCSGG	1 cut(s)	53
AvaII	GGWCC	3 cut(s)	49, 274, 298
AvrII	CCTAGG	1 cut(s)	115
AxyI	CCTNAGG	1 cut(s)	8
BccI	CCATC	1 cut(s)	166
BclI	TGATCA	2 cut(s)	195, 240
BcnI	CCSGG	1 cut(s)	53
BfaI	CTAG	2 cut(s)	116, 287
BfuAI	ACCTGC	1 cut(s)	309
BisI	GCNGC	1 cut(s)	131
BlnI	CCTAGG	1 cut(s)	115
BlpI	GCTNAGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	132
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	3 cut(s)	49, 274, 298
BmgBI	CACGTC	1 cut(s)	139
BmgT120I	GGNCC	3 cut(s)	49, 274, 298
BmrFI	CCNGG	1 cut(s)	53
BpmI	CTGGAG	1 cut(s)	290
Bpu1102I	GCTNAGC	1 cut(s)	234
BpuEI	CTTGAG	1 cut(s)	334
BpuMI	CCSGG	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	115
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 58, 366
Bse1I	ACTGG	1 cut(s)	307
Bse21I	CCTNAGG	1 cut(s)	8
BseDI	CCNNGG	1 cut(s)	115
BseGI	GGATG	1 cut(s)	181
BseLI	CCNNNNNNNGG	3 cut(s)	46, 58, 366
BseMII	CTCAG	2 cut(s)	22, 225
BseNI	ACTGG	1 cut(s)	307
BseYI	CCCAGC	2 cut(s)	41, 209
BsiSI	CCGG	1 cut(s)	52
BslI	CCNNNNNNNGG	3 cut(s)	46, 58, 366
Bsp143I	GATC	6 cut(s)	3, 103, 195, 240, 264, 345
Bsp1720I	GCTNAGC	1 cut(s)	234
BspACI	CCGC	4 cut(s)	84, 120, 130, 296
BspCNI	CTCAG	2 cut(s)	21, 226
BspMI	ACCTGC	1 cut(s)	309
BsrBI	CCGCTC	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	307
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	6 cut(s)	3, 103, 195, 240, 264, 345
BssT1I	CCWWGG	1 cut(s)	115
Bst4CI	ACNGT	1 cut(s)	271
BstC8I	GCNNGC	1 cut(s)	26
BstDEI	CTNAG	2 cut(s)	8, 234
BstF5I	GGATG	1 cut(s)	181
BstKTI	GATC	6 cut(s)	6, 106, 198, 243, 267, 348
BstMBI	GATC	6 cut(s)	3, 103, 195, 240, 264, 345
BstSCI	CCNGG	1 cut(s)	51
Bsu36I	CCTNAGG	1 cut(s)	8
BtrI	CACGTC	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	181
BveI	ACCTGC	1 cut(s)	309
Cac8I	GCNNGC	1 cut(s)	26
Cfr13I	GGNCC	3 cut(s)	49, 274, 298
Csp6I	GTAC	1 cut(s)	112
CviAII	CATG	2 cut(s)	31, 46
CviJI	RGCY	6 cut(s)	71, 185, 209, 233, 238, 359
CviKI_1	RGCY	6 cut(s)	71, 185, 209, 233, 238, 359
CviQI	GTAC	1 cut(s)	112
DdeI	CTNAG	2 cut(s)	8, 234
DpnI	GATC	6 cut(s)	5, 105, 197, 242, 266, 347
DpnII	GATC	6 cut(s)	3, 103, 195, 240, 264, 345
EciI	GGCGGA	2 cut(s)	135, 311
Eco130I	CCWWGG	1 cut(s)	115
Eco47I	GGWCC	3 cut(s)	49, 274, 298
Eco57I	CTGAAG	2 cut(s)	82, 375
Eco81I	CCTNAGG	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	2 cut(s)	34, 49
FaiI	YATR	3 cut(s)	32, 47, 344
FatI	CATG	2 cut(s)	30, 45
FbaI	TGATCA	2 cut(s)	195, 240
FblI	GTMKAC	1 cut(s)	36
Fnu4HI	GCNGC	1 cut(s)	131
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	1 cut(s)	131
FspBI	CTAG	2 cut(s)	116, 287
GluI	GCNGC	1 cut(s)	131
GsaI	CCCAGC	2 cut(s)	45, 213
GsuI	CTGGAG	1 cut(s)	290
HapII	CCGG	1 cut(s)	52
Hin1II	CATG	2 cut(s)	34, 49
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	2 cut(s)	13, 378
HpaII	CCGG	1 cut(s)	52
Hpy166II	GTNNAC	2 cut(s)	37, 274
Hpy188I	TCNGA	4 cut(s)	20, 165, 355, 383
Hpy188III	TCNNGA	2 cut(s)	10, 313
Hpy8I	GTNNAC	2 cut(s)	37, 274
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	1 cut(s)	313
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	2 cut(s)	138, 159
HpyF3I	CTNAG	2 cut(s)	8, 234
HpySE526I	ACGT	2 cut(s)	138, 159
Hsp92II	CATG	2 cut(s)	34, 49
Ksp22I	TGATCA	2 cut(s)	195, 240
Kzo9I	GATC	6 cut(s)	3, 103, 195, 240, 264, 345
LmnI	GCTCC	2 cut(s)	309, 331
LpnPI	CCDG	7 cut(s)	44, 55, 65, 135, 195, 314, 320
MaeI	CTAG	2 cut(s)	116, 287
MaeII	ACGT	2 cut(s)	138, 159
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	6 cut(s)	5, 105, 197, 242, 266, 347
MbiI	CCGCTC	1 cut(s)	86
MboI	GATC	6 cut(s)	3, 103, 195, 240, 264, 345
MluCI	AATT	2 cut(s)	191, 364
MnlI	CCTC	5 cut(s)	14, 17, 285, 309, 329
MspI	CCGG	1 cut(s)	52
MspR9I	CCNGG	1 cut(s)	53
NciI	CCSGG	1 cut(s)	53
NdeII	GATC	6 cut(s)	3, 103, 195, 240, 264, 345
NlaIII	CATG	2 cut(s)	34, 49
NmeAIII	GCCGAG	1 cut(s)	47
NmuCI	GTSAC	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	13
PkrI	GCNGC	1 cut(s)	132
PspFI	CCCAGC	2 cut(s)	41, 209
PspPI	GGNCC	3 cut(s)	49, 274, 298
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
SalI	GTCGAC	1 cut(s)	35
SatI	GCNGC	1 cut(s)	131
Sau3AI	GATC	6 cut(s)	3, 103, 195, 240, 264, 345
Sau96I	GGNCC	3 cut(s)	49, 274, 298
ScrFI	CCNGG	1 cut(s)	53
SinI	GGWCC	3 cut(s)	49, 274, 298
SmlI	CTYRAG	1 cut(s)	313
SmoI	CTYRAG	1 cut(s)	313
Sse9I	AATT	2 cut(s)	191, 364
SsiI	CCGC	4 cut(s)	84, 120, 130, 296
SspMI	CTAG	2 cut(s)	116, 287
StyD4I	CCNGG	1 cut(s)	51
StyI	CCWWGG	1 cut(s)	115
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	2 cut(s)	141, 162
TaqI	TCGA	2 cut(s)	36, 156
TasI	AATT	2 cut(s)	191, 364
TauI	GCSGC	1 cut(s)	133
TfiI	GAWTC	1 cut(s)	13
TseFI	GTSAC	1 cut(s)	134
Tsp45I	GTSAC	1 cut(s)	134
VpaK11BI	GGWCC	3 cut(s)	49, 274, 298
XmaJI	CCTAGG	1 cut(s)	115
XmiI	GTMKAC	1 cut(s)	36
XspI	CTAG	2 cut(s)	116, 287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.