Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002068.1

Orthogroup ID

OG0001882

Physical Location & Seq

Genomic Coordinates Reverse (-)

50814 .. 51293

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002068.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgatcctcaagattctcggaggcaagcacatggtcgaccccagcatggtccgggttctgggtcgctcggctttccacgacaccactctcacaggcttcggcgacctgtcgtacctaggcggagagtggccacgtgacgtggcgtttgctggtttcgacgttccgatagggatggatgtttcggctgataaattgatcaacagggtagctgggattgacccacaaaggagagctgagcttatcaagatgttggatattgatctatcatggaagttgcatattcatctcgcgagggcggacctgctccagttcttgaggaaggaatgtgaggagcgaggtgctatgatcgtttctcaagccccaaattggagagagagagtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

127

Amino Acids

14.31

Weight (kDa)

6.91

Isoelectric Point (pI)

33.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02270 AT5G02270
fragaria_vesca	FvH4_6g08040
malus_domestica	MD03G1234700.v1.1 MD04G1190800.v1.1 MD12G1203100.v1.1
prunus_persica	Prupe.6G308800_v2.0.a1
pyrus_communis	pycom12g18950
rosa_chinensis	RchiOBHm_Chr2g0097941 RchiOBHm_Chr3g0457711 RchiOBHm_Chr5g0083331 RchiOBHm_Chr7g0234131
rosa_laevigata	RLG00000019926 RLG00000025192
rosa_multiflora	Rmu_sc0000566.1_g000046 Rmu_sc0001301.1_g000082 Rmu_sc0002068.1_g000007 Rmu_sc0004502.1_g000016 Rmu_sc0005743.1_g000009 Rmu_sc0007131.1_g000011 Rmu_sc0007395.1_g000002 Rmu_sc0028418.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370790 Rroxscaffold_6G00421550 Rroxscaffold_7G00180370
rosa_rugosa	Rorug03G0022700 Rorug05G0320000 Rorug06G0006300 Rorug06G0405000
rosa_samantha	Rh2AG292200 Rh2DG120300 Rh2DG432800 Rh3AG083500 Rh3BG086000 Rh3CG086300 Rh3DG086900 Rh4BG183300 Rh6BG113400 Rh6CG111600 Rh6DG101300 Rh7CG459900 Rh7DG392600 Rh7DG481700
rosa_wichuraiana	Rw3G007150 Rw5G007850 Rw7G033040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	309
AccI	GTMKAC	1 cut(s)	36
AccII	CGCG	1 cut(s)	290
AciI	CCGC	2 cut(s)	120, 296
AcoI	YGGCCR	1 cut(s)	128
AcvI	CACGTG	1 cut(s)	134
AfaI	GTAC	1 cut(s)	113
AfiI	CCNNNNNNNGG	3 cut(s)	46, 58, 366
AjiI	CACGTC	1 cut(s)	139
AluBI	AGCT	3 cut(s)	209, 233, 238
AluI	AGCT	3 cut(s)	209, 233, 238
AoxI	GGCC	1 cut(s)	128
ArsI	GACNNNNNNTTYG	2 cut(s)	128, 160
AspA2I	CCTAGG	1 cut(s)	115
AspS9I	GGNCC	2 cut(s)	49, 298
AsuC2I	CCSGG	1 cut(s)	53
AvaII	GGWCC	2 cut(s)	49, 298
AvrII	CCTAGG	1 cut(s)	115
BalI	TGGCCA	1 cut(s)	130
BbrPI	CACGTG	1 cut(s)	134
BccI	CCATC	1 cut(s)	166
BclI	TGATCA	1 cut(s)	195
BcnI	CCSGG	1 cut(s)	53
BfaI	CTAG	1 cut(s)	116
BfuAI	ACCTGC	1 cut(s)	309
BlnI	CCTAGG	1 cut(s)	115
BlpI	GCTNAGC	1 cut(s)	234
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	2 cut(s)	49, 298
BmgBI	CACGTC	1 cut(s)	139
BmgT120I	GGNCC	2 cut(s)	49, 298
BmrFI	CCNGG	1 cut(s)	53
BpmI	CTGGAG	1 cut(s)	290
Bpu1102I	GCTNAGC	1 cut(s)	234
BpuEI	CTTGAG	2 cut(s)	334, 339
BpuMI	CCSGG	1 cut(s)	53
BsaAI	YACGTR	1 cut(s)	134
BsaBI	GATNNNNATC	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	115
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 58, 366
Bse1I	ACTGG	1 cut(s)	307
Bse8I	GATNNNNATC	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	115
BseGI	GGATG	2 cut(s)	177, 181
BseJI	GATNNNNATC	1 cut(s)	258
BseLI	CCNNNNNNNGG	3 cut(s)	46, 58, 366
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	1 cut(s)	307
BseRI	GAGGAG	1 cut(s)	344
BseYI	CCCAGC	2 cut(s)	41, 209
Bsh1236I	CGCG	1 cut(s)	290
BshFI	GGCC	1 cut(s)	130
BsiSI	CCGG	1 cut(s)	52
BslI	CCNNNNNNNGG	3 cut(s)	46, 58, 366
BsnI	GGCC	1 cut(s)	130
Bsp143I	GATC	4 cut(s)	3, 195, 259, 345
Bsp1720I	GCTNAGC	1 cut(s)	234
Bsp68I	TCGCGA	1 cut(s)	290
BspACI	CCGC	2 cut(s)	120, 296
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	1 cut(s)	226
BspFNI	CGCG	1 cut(s)	290
BspMI	ACCTGC	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	307
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	4 cut(s)	3, 195, 259, 345
BssT1I	CCWWGG	1 cut(s)	115
BstBAI	YACGTR	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	26
BstDEI	CTNAG	1 cut(s)	234
BstF5I	GGATG	2 cut(s)	177, 181
BstFNI	CGCG	1 cut(s)	290
BstKTI	GATC	4 cut(s)	6, 198, 262, 348
BstMBI	GATC	4 cut(s)	3, 195, 259, 345
BstSCI	CCNGG	1 cut(s)	51
BstUI	CGCG	1 cut(s)	290
BsuRI	GGCC	1 cut(s)	130
BtrI	CACGTC	1 cut(s)	139
BtsCI	GGATG	2 cut(s)	177, 181
BtuMI	TCGCGA	1 cut(s)	290
BveI	ACCTGC	1 cut(s)	309
Cac8I	GCNNGC	1 cut(s)	26
Cfr13I	GGNCC	2 cut(s)	49, 298
Csp6I	GTAC	1 cut(s)	112
CviAII	CATG	3 cut(s)	31, 46, 267
CviJI	RGCY	8 cut(s)	71, 96, 130, 185, 209, 233, 238, 359
CviKI_1	RGCY	8 cut(s)	71, 96, 130, 185, 209, 233, 238, 359
CviQI	GTAC	1 cut(s)	112
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	4 cut(s)	5, 197, 261, 347
DpnII	GATC	4 cut(s)	3, 195, 259, 345
EaeI	YGGCCR	1 cut(s)	128
EciI	GGCGGA	2 cut(s)	135, 311
Eco130I	CCWWGG	1 cut(s)	115
Eco47I	GGWCC	2 cut(s)	49, 298
Eco72I	CACGTG	1 cut(s)	134
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	3 cut(s)	34, 49, 270
FaiI	YATR	5 cut(s)	32, 47, 268, 279, 344
FatI	CATG	3 cut(s)	30, 45, 266
FbaI	TGATCA	1 cut(s)	195
FblI	GTMKAC	1 cut(s)	36
FokI	GGATG	2 cut(s)	184, 188
FspBI	CTAG	1 cut(s)	116
GsaI	CCCAGC	2 cut(s)	45, 213
GsuI	CTGGAG	1 cut(s)	290
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	1 cut(s)	52
Hin1II	CATG	3 cut(s)	34, 49, 270
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	2 cut(s)	13, 378
HpaII	CCGG	1 cut(s)	52
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	3 cut(s)	20, 165, 383
Hpy188III	TCNNGA	4 cut(s)	10, 244, 289, 313
Hpy8I	GTNNAC	1 cut(s)	37
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	1 cut(s)	313
HpyCH4IV	ACGT	3 cut(s)	133, 138, 159
HpyCH4V	TGCA	1 cut(s)	277
HpyF3I	CTNAG	1 cut(s)	234
HpySE526I	ACGT	3 cut(s)	133, 138, 159
Hsp92II	CATG	3 cut(s)	34, 49, 270
Ksp22I	TGATCA	1 cut(s)	195
Kzo9I	GATC	4 cut(s)	3, 195, 259, 345
LmnI	GCTCC	2 cut(s)	309, 331
MaeI	CTAG	1 cut(s)	116
MaeII	ACGT	3 cut(s)	133, 138, 159
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	4 cut(s)	5, 197, 261, 347
MboI	GATC	4 cut(s)	3, 195, 259, 345
MlsI	TGGCCA	1 cut(s)	130
MluCI	AATT	2 cut(s)	191, 364
MluNI	TGGCCA	1 cut(s)	130
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	6 cut(s)	14, 17, 285, 309, 322, 329
Mox20I	TGGCCA	1 cut(s)	130
MscI	TGGCCA	1 cut(s)	130
Msp20I	TGGCCA	1 cut(s)	130
MspI	CCGG	1 cut(s)	52
MspR9I	CCNGG	1 cut(s)	53
MvnI	CGCG	1 cut(s)	290
NciI	CCSGG	1 cut(s)	53
NdeII	GATC	4 cut(s)	3, 195, 259, 345
NlaIII	CATG	3 cut(s)	34, 49, 270
NmeAIII	GCCGAG	1 cut(s)	47
NmuCI	GTSAC	1 cut(s)	134
NruI	TCGCGA	1 cut(s)	290
PfeI	GAWTC	1 cut(s)	13
PmaCI	CACGTG	1 cut(s)	134
PmlI	CACGTG	1 cut(s)	134
Ppu21I	YACGTR	1 cut(s)	134
PspCI	CACGTG	1 cut(s)	134
PspFI	CCCAGC	2 cut(s)	41, 209
PspPI	GGNCC	2 cut(s)	49, 298
RruI	TCGCGA	1 cut(s)	290
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
SalI	GTCGAC	1 cut(s)	35
Sau3AI	GATC	4 cut(s)	3, 195, 259, 345
Sau96I	GGNCC	2 cut(s)	49, 298
ScrFI	CCNGG	1 cut(s)	53
SinI	GGWCC	2 cut(s)	49, 298
SmlI	CTYRAG	3 cut(s)	8, 313, 354
SmoI	CTYRAG	3 cut(s)	8, 313, 354
Sse9I	AATT	2 cut(s)	191, 364
SsiI	CCGC	2 cut(s)	120, 296
SspMI	CTAG	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	51
StyI	CCWWGG	1 cut(s)	115
TaiI	ACGT	3 cut(s)	136, 141, 162
TaqI	TCGA	2 cut(s)	36, 156
TasI	AATT	2 cut(s)	191, 364
TfiI	GAWTC	1 cut(s)	13
TseFI	GTSAC	1 cut(s)	134
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	1 cut(s)	272
VpaK11BI	GGWCC	2 cut(s)	49, 298
XmaJI	CCTAGG	1 cut(s)	115
XmiI	GTMKAC	1 cut(s)	36
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.