Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001301.1

Orthogroup ID

OG0001882

Physical Location & Seq

Genomic Coordinates Reverse (-)

418921 .. 420528

Gene Structure 1608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001301.1_g000082.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

atgaccaccctctctcttcctcctccgagtttcaatcctctaaaactcgctcccaaatccctcattccacccaaaccggcctccgtctccgcctccgaacccgacccgtcctttacagaaaccccaaccctaggtccaaacccgacccaatcccccaccacgctcctccacctcgctttcaaccaagaccacacctgcttctccgccgccaccgactccggcttccgcgtctacacctgcgaccccttccgccacttccacagcgacccctccggtctacgcggcggccttggattcgtccgcatccctctaatcgacgacttctccctcaccctcaacgtcggcgaccgatgcctcctcgttggatccaacggcgccggcaaaaccatgatcctcaggattctcggaggcaagcacatggtcgaccccagcatggtcctggttctgggtcgctcggctttccacgacactgctctcaccggcttcggcgacctgtcgtacctaggcggagagtggcggcgtgacatggcgtttgctggtttagacgttccgatacagatggatgtttgggctgataaattgatcaacggggtagctgggattgacccacaaaggagagctgagctgatcaaggtgcttctgcttgatgagatcgcggtggaccttgatgtgctagcgagggcggacctgctccagttcttgaggaaggaatgtgaggagcgagaagagctgcacattcttgaaccatcgagactcccagaatcaattgctgcacctgcacctgcatctgcactagtcctcagttccggccagcctatgcccaacgcaaaggcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

278

Amino Acids

29.96

Weight (kDa)

5.34

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02270 AT5G02270
fragaria_vesca	FvH4_6g08040
malus_domestica	MD03G1234700.v1.1 MD04G1190800.v1.1 MD12G1203100.v1.1
prunus_persica	Prupe.6G308800_v2.0.a1
pyrus_communis	pycom12g18950
rosa_chinensis	RchiOBHm_Chr2g0097941 RchiOBHm_Chr3g0457711 RchiOBHm_Chr5g0083331 RchiOBHm_Chr7g0234131
rosa_laevigata	RLG00000019926 RLG00000025192
rosa_multiflora	Rmu_sc0000566.1_g000046 Rmu_sc0001301.1_g000082 Rmu_sc0002068.1_g000007 Rmu_sc0004502.1_g000016 Rmu_sc0005743.1_g000009 Rmu_sc0007131.1_g000011 Rmu_sc0007395.1_g000002 Rmu_sc0028418.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370790 Rroxscaffold_6G00421550 Rroxscaffold_7G00180370
rosa_rugosa	Rorug03G0022700 Rorug05G0320000 Rorug06G0006300 Rorug06G0405000
rosa_samantha	Rh2AG292200 Rh2DG120300 Rh2DG432800 Rh3AG083500 Rh3BG086000 Rh3CG086300 Rh3DG086900 Rh4BG183300 Rh6BG113400 Rh6CG111600 Rh6DG101300 Rh7CG459900 Rh7DG392600 Rh7DG481700
rosa_wichuraiana	Rw3G007150 Rw5G007850 Rw7G033040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	4 cut(s)	203, 245, 784, 790
Acc36I	ACCTGC	5 cut(s)	203, 245, 696, 784, 790
AccB1I	GGYRCC	1 cut(s)	374
AccI	GTMKAC	3 cut(s)	231, 277, 423
AccII	CGCG	3 cut(s)	228, 282, 656
AclWI	GGATC	3 cut(s)	360, 373, 385
AcoI	YGGCCR	1 cut(s)	808
AcyI	GRCGYC	1 cut(s)	375
AfaI	GTAC	1 cut(s)	500
AfiI	CCNNNNNNNGG	3 cut(s)	131, 433, 445
AgsI	TTSAA	3 cut(s)	34, 181, 743
AhlI	ACTAGT	1 cut(s)	793
AjnI	CCWGG	1 cut(s)	438
AluBI	AGCT	4 cut(s)	596, 620, 625, 730
AluI	AGCT	4 cut(s)	596, 620, 625, 730
Alw26I	GTCTC	2 cut(s)	91, 745
AlwI	GGATC	3 cut(s)	360, 373, 385
AoxI	GGCC	3 cut(s)	78, 286, 808
ApeKI	GCWGC	2 cut(s)	730, 770
ArsI	GACNNNNNNTTYG	2 cut(s)	515, 547
AspA2I	CCTAGG	2 cut(s)	130, 502
AspLEI	GCGC	1 cut(s)	377
AspS9I	GGNCC	4 cut(s)	134, 436, 661, 685
AsuHPI	GGTGA	2 cut(s)	322, 469
AsuNHI	GCTAGC	1 cut(s)	673
AvaII	GGWCC	4 cut(s)	134, 436, 661, 685
AvrII	CCTAGG	2 cut(s)	130, 502
AxyI	CCTNAGG	1 cut(s)	395
BamHI	GGATCC	1 cut(s)	365
BanI	GGYRCC	1 cut(s)	374
BbvI	GCAGC	2 cut(s)	717, 757
BccI	CCATC	2 cut(s)	553, 754
BceAI	ACGGC	1 cut(s)	388
BciT130I	CCWGG	1 cut(s)	440
BclI	TGATCA	2 cut(s)	582, 627
BcoDI	GTCTC	2 cut(s)	91, 745
BcuI	ACTAGT	1 cut(s)	793
BfaI	CTAG	4 cut(s)	131, 503, 674, 794
BfoI	RGCGCY	1 cut(s)	378
BfuAI	ACCTGC	5 cut(s)	203, 245, 696, 784, 790
BisI	GCNGC	6 cut(s)	207, 283, 286, 518, 731, 771
BlnI	CCTAGG	2 cut(s)	130, 502
BlpI	GCTNAGC	1 cut(s)	621
BlsI	GCNGC	6 cut(s)	208, 284, 287, 519, 732, 772
Bme1390I	CCNGG	1 cut(s)	440
Bme18I	GGWCC	4 cut(s)	134, 436, 661, 685
BmgT120I	GGNCC	4 cut(s)	134, 436, 661, 685
BmiI	GGNNCC	2 cut(s)	367, 376
BmrFI	CCNGG	1 cut(s)	440
BmsI	GCATC	3 cut(s)	312, 341, 794
BmtI	GCTAGC	1 cut(s)	677
BpmI	CTGGAG	1 cut(s)	677
Bpu1102I	GCTNAGC	1 cut(s)	621
BpuEI	CTTGAG	1 cut(s)	721
BsaHI	GRCGYC	1 cut(s)	375
BsaJI	CCNNGG	3 cut(s)	130, 289, 502
BsaWI	WCCGGW	1 cut(s)	272
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 433, 445
Bse118I	RCCGGY	3 cut(s)	76, 377, 479
Bse1I	ACTGG	1 cut(s)	694
Bse21I	CCTNAGG	1 cut(s)	395
BseBI	CCWGG	1 cut(s)	440
BseDI	CCNNGG	3 cut(s)	130, 289, 502
BseGI	GGATG	2 cut(s)	303, 568
BseLI	CCNNNNNNNGG	3 cut(s)	131, 433, 445
BseMII	CTCAG	3 cut(s)	409, 612, 814
BseNI	ACTGG	1 cut(s)	694
BseRI	GAGGAG	4 cut(s)	12, 155, 347, 731
BseXI	GCAGC	2 cut(s)	717, 757
BseYI	CCCAGC	2 cut(s)	428, 596
BsgI	GTGCAG	4 cut(s)	716, 756, 762, 774
Bsh1236I	CGCG	3 cut(s)	228, 282, 656
Bsh1285I	CGRYCG	1 cut(s)	349
BshFI	GGCC	3 cut(s)	80, 288, 810
BshNI	GGYRCC	1 cut(s)	374
BsiEI	CGRYCG	1 cut(s)	349
BsiSI	CCGG	6 cut(s)	77, 219, 273, 378, 480, 807
BslI	CCNNNNNNNGG	3 cut(s)	131, 433, 445
BsmAI	GTCTC	2 cut(s)	91, 745
BsmBI	CGTCTC	1 cut(s)	91
BsnI	GGCC	3 cut(s)	80, 288, 810
Bsp143I	GATC	5 cut(s)	365, 390, 582, 627, 651
Bsp1720I	GCTNAGC	1 cut(s)	621
BspANI	GGCC	3 cut(s)	80, 288, 810
BspCNI	CTCAG	3 cut(s)	408, 613, 813
BspFNI	CGCG	3 cut(s)	228, 282, 656
BspLI	GGNNCC	2 cut(s)	367, 376
BspMI	ACCTGC	5 cut(s)	203, 245, 696, 784, 790
BspOI	GCTAGC	1 cut(s)	677
BspPI	GGATC	3 cut(s)	360, 373, 385
BspQI	GCTCTTC	1 cut(s)	720
BspT107I	GGYRCC	1 cut(s)	374
BsrFI	RCCGGY	3 cut(s)	76, 377, 479
BsrI	ACTGG	1 cut(s)	694
BssAI	RCCGGY	3 cut(s)	76, 377, 479
BssECI	CCNNGG	3 cut(s)	130, 289, 502
BssMI	GATC	5 cut(s)	365, 390, 582, 627, 651
BssNI	GRCGYC	1 cut(s)	375
BssT1I	CCWWGG	3 cut(s)	130, 289, 502
Bst2UI	CCWGG	1 cut(s)	440
Bst6I	CTCTTC	2 cut(s)	21, 720
BstACI	GRCGYC	1 cut(s)	375
BstC8I	GCNNGC	4 cut(s)	379, 413, 675, 812
BstDEI	CTNAG	3 cut(s)	395, 621, 800
BstF5I	GGATG	2 cut(s)	303, 568
BstFNI	CGCG	3 cut(s)	228, 282, 656
BstH2I	RGCGCY	1 cut(s)	378
BstHHI	GCGC	1 cut(s)	377
BstKTI	GATC	5 cut(s)	368, 393, 585, 630, 654
BstMAI	GTCTC	2 cut(s)	91, 745
BstMBI	GATC	5 cut(s)	365, 390, 582, 627, 651
BstMCI	CGRYCG	1 cut(s)	349
BstMWI	GCNNNNNNNGC	3 cut(s)	351, 727, 776
BstNI	CCWGG	1 cut(s)	440
BstSCI	CCNGG	1 cut(s)	438
BstUI	CGCG	3 cut(s)	228, 282, 656
BstV1I	GCAGC	2 cut(s)	717, 757
BstX2I	RGATCY	1 cut(s)	365
BstYI	RGATCY	1 cut(s)	365
Bsu36I	CCTNAGG	1 cut(s)	395
BsuRI	GGCC	3 cut(s)	80, 288, 810
BtsCI	GGATG	2 cut(s)	303, 568
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	1 cut(s)	468
BveI	ACCTGC	5 cut(s)	203, 245, 696, 784, 790
Cac8I	GCNNGC	4 cut(s)	379, 413, 675, 812
CfoI	GCGC	1 cut(s)	377
Cfr10I	RCCGGY	3 cut(s)	76, 377, 479
Cfr13I	GGNCC	4 cut(s)	134, 436, 661, 685
CseI	GACGC	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	499
CviAII	CATG	4 cut(s)	388, 418, 433, 526
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	3 cut(s)	395, 621, 800
DinI	GGCGCC	1 cut(s)	376
DpnI	GATC	5 cut(s)	367, 392, 584, 629, 653
DpnII	GATC	5 cut(s)	365, 390, 582, 627, 651
EaeI	YGGCCR	1 cut(s)	808
Eam1104I	CTCTTC	2 cut(s)	21, 720
EarI	CTCTTC	2 cut(s)	21, 720
EciI	GGCGGA	5 cut(s)	79, 193, 239, 522, 698
Eco130I	CCWWGG	3 cut(s)	130, 289, 502
Eco47I	GGWCC	4 cut(s)	134, 436, 661, 685
Eco81I	CCTNAGG	1 cut(s)	395
EcoRII	CCWGG	1 cut(s)	438
EcoT14I	CCWWGG	3 cut(s)	130, 289, 502
EgeI	GGCGCC	1 cut(s)	376
EheI	GGCGCC	1 cut(s)	376
ErhI	CCWWGG	3 cut(s)	130, 289, 502
Esp3I	CGTCTC	1 cut(s)	91
FaeI	CATG	4 cut(s)	391, 421, 436, 529
FaiI	YATR	6 cut(s)	389, 419, 434, 527, 818, 835
FatI	CATG	4 cut(s)	387, 417, 432, 525
FbaI	TGATCA	2 cut(s)	582, 627
FblI	GTMKAC	3 cut(s)	231, 277, 423
Fnu4HI	GCNGC	6 cut(s)	207, 283, 286, 518, 731, 771
FokI	GGATG	2 cut(s)	290, 575
Fsp4HI	GCNGC	6 cut(s)	207, 283, 286, 518, 731, 771
FspBI	CTAG	4 cut(s)	131, 503, 674, 794
GlaI	GCGC	1 cut(s)	376
GluI	GCNGC	6 cut(s)	207, 283, 286, 518, 731, 771
GsaI	CCCAGC	2 cut(s)	432, 600
GsuI	CTGGAG	1 cut(s)	677
HaeII	RGCGCY	1 cut(s)	378
HaeIII	GGCC	3 cut(s)	80, 288, 810
HapII	CCGG	6 cut(s)	77, 219, 273, 378, 480, 807
HgaI	GACGC	1 cut(s)	217
HhaI	GCGC	1 cut(s)	377
Hin1I	GRCGYC	1 cut(s)	375
Hin1II	CATG	4 cut(s)	391, 421, 436, 529
Hin6I	GCGC	1 cut(s)	375
HinP1I	GCGC	1 cut(s)	375
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	5 cut(s)	215, 294, 400, 753, 761
HpaII	CCGG	6 cut(s)	77, 219, 273, 378, 480, 807
HphI	GGTGA	2 cut(s)	322, 469
Hpy166II	GTNNAC	4 cut(s)	232, 278, 424, 661
Hpy188I	TCNGA	4 cut(s)	27, 97, 407, 552
Hpy188III	TCNNGA	4 cut(s)	397, 700, 740, 750
Hpy8I	GTNNAC	4 cut(s)	232, 278, 424, 661
Hpy99I	CGWCG	2 cut(s)	320, 344
HpyAV	CCTTC	2 cut(s)	256, 700
HpyCH4IV	ACGT	2 cut(s)	339, 546
HpyCH4V	TGCA	5 cut(s)	733, 773, 779, 785, 791
HpyF10VI	GCNNNNNNNGC	3 cut(s)	351, 727, 776
HpyF3I	CTNAG	3 cut(s)	395, 621, 800
HpySE526I	ACGT	2 cut(s)	339, 546
Hsp92I	GRCGYC	1 cut(s)	375
Hsp92II	CATG	4 cut(s)	391, 421, 436, 529
HspAI	GCGC	1 cut(s)	375
KasI	GGCGCC	1 cut(s)	374
KroI	GCCGGC	1 cut(s)	377
KroNI	GCCGGC	1 cut(s)	379
Ksp22I	TGATCA	2 cut(s)	582, 627
Kzo9I	GATC	5 cut(s)	365, 390, 582, 627, 651
LguI	GCTCTTC	1 cut(s)	720
LmnI	GCTCC	4 cut(s)	55, 168, 696, 718
Lsp1109I	GCAGC	2 cut(s)	717, 757
LweI	GCATC	3 cut(s)	312, 341, 794
MaeI	CTAG	4 cut(s)	131, 503, 674, 794
MaeII	ACGT	2 cut(s)	339, 546
MaeIII	GTNAC	1 cut(s)	521
MalI	GATC	5 cut(s)	367, 392, 584, 629, 653
MboI	GATC	5 cut(s)	365, 390, 582, 627, 651
MboII	GAAGA	2 cut(s)	8, 737
MfeI	CAATTG	1 cut(s)	765
MflI	RGATCY	1 cut(s)	365
MluCI	AATT	2 cut(s)	578, 765
Mly113I	GGCGCC	1 cut(s)	375
MlyI	GAGTC	2 cut(s)	209, 747
MmeI	TCCRAC	2 cut(s)	343, 393
MroNI	GCCGGC	1 cut(s)	377
MspI	CCGG	6 cut(s)	77, 219, 273, 378, 480, 807
MspR9I	CCNGG	1 cut(s)	440
MunI	CAATTG	1 cut(s)	765
MvaI	CCWGG	1 cut(s)	440
MvnI	CGCG	3 cut(s)	228, 282, 656
MwoI	GCNNNNNNNGC	3 cut(s)	351, 727, 776
NaeI	GCCGGC	1 cut(s)	379
NarI	GGCGCC	1 cut(s)	375
NdeII	GATC	5 cut(s)	365, 390, 582, 627, 651
NgoMIV	GCCGGC	1 cut(s)	377
NheI	GCTAGC	1 cut(s)	673
NlaIII	CATG	4 cut(s)	391, 421, 436, 529
NlaIV	GGNNCC	2 cut(s)	367, 376
NmeAIII	GCCGAG	1 cut(s)	434
NmuCI	GTSAC	1 cut(s)	521
PaqCI	CACCTGC	4 cut(s)	203, 245, 784, 790
PciSI	GCTCTTC	1 cut(s)	720
PdiI	GCCGGC	1 cut(s)	379
PfeI	GAWTC	3 cut(s)	294, 400, 761
PkrI	GCNGC	6 cut(s)	208, 284, 287, 519, 732, 772
PleI	GAGTC	2 cut(s)	209, 747
PluTI	GGCGCC	1 cut(s)	378
PpsI	GAGTC	2 cut(s)	209, 747
Psp6I	CCWGG	1 cut(s)	438
PspFI	CCCAGC	2 cut(s)	428, 596
PspGI	CCWGG	1 cut(s)	438
PspN4I	GGNNCC	2 cut(s)	367, 376
PspPI	GGNCC	4 cut(s)	134, 436, 661, 685
PsuI	RGATCY	1 cut(s)	365
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
SalI	GTCGAC	1 cut(s)	422
SapI	GCTCTTC	1 cut(s)	720
SatI	GCNGC	6 cut(s)	207, 283, 286, 518, 731, 771
Sau3AI	GATC	5 cut(s)	365, 390, 582, 627, 651
Sau96I	GGNCC	4 cut(s)	134, 436, 661, 685
SchI	GAGTC	2 cut(s)	209, 747
ScrFI	CCNGG	1 cut(s)	440
SfaNI	GCATC	3 cut(s)	312, 341, 794
SfoI	GGCGCC	1 cut(s)	376
SinI	GGWCC	4 cut(s)	134, 436, 661, 685
SmlI	CTYRAG	1 cut(s)	700
SmoI	CTYRAG	1 cut(s)	700
SpeI	ACTAGT	1 cut(s)	793
Sse9I	AATT	2 cut(s)	578, 765
SspDI	GGCGCC	1 cut(s)	374
SspMI	CTAG	4 cut(s)	131, 503, 674, 794
StyD4I	CCNGG	1 cut(s)	438
StyI	CCWWGG	3 cut(s)	130, 289, 502
TaiI	ACGT	2 cut(s)	342, 549
TaqI	TCGA	3 cut(s)	315, 423, 749
TaqII	GACCGA	1 cut(s)	363
TasI	AATT	2 cut(s)	578, 765
TauI	GCSGC	4 cut(s)	209, 285, 288, 520
TfiI	GAWTC	3 cut(s)	294, 400, 761
TscAI	CASTG	1 cut(s)	475
TseFI	GTSAC	1 cut(s)	521
TseI	GCWGC	2 cut(s)	730, 770
Tsp45I	GTSAC	1 cut(s)	521
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	1 cut(s)	475
VpaK11BI	GGWCC	4 cut(s)	134, 436, 661, 685
XcmI	CCANNNNNNNNNTGG	1 cut(s)	436
XmaJI	CCTAGG	2 cut(s)	130, 502
XmiI	GTMKAC	3 cut(s)	231, 277, 423
XspI	CTAG	4 cut(s)	131, 503, 674, 794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.