Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001882

Physical Location & Seq

Genomic Coordinates Forward (+)

58643654 .. 58644263

Gene Structure 610 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019926

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGATCCTCAGGATTCTCGGAGGCAAGCACATGGTCGACCCCAGCATGGTCCGGGTTCTGGGTCGCTCGGCTTTCCACGACACCGCTCTCACCAGCTCCGGCGACCTGTCGTACCTCTGCGGAGAGTGGCGGGGTGACGTGGCATTTGCTGGTTTCGACGTTCTGATACAGATGGATGTTTCGGCTGATAAATTGATCAACGGGCTGATCAAGGTGTTGGATATGGATCTTTCATGGAGGTTGCATAAGGTCTTAGATGGTCAGAGAAGAAGGGTCCAGATCTGTATGGATCTGCTAAGACCATATAAGGTGCTTCTGCTTGATGAGATCACGGTGGACCTTGATGTGCTAGCGAGGGCGGACCTGCTCCAGTTCTTGAGGAAGGAATGTGAGGAGCGAGGTGCTATGATCATTTACGCGACGCTATTTTCCAACATTGCTGAAGCACCCAAATCGTCTTTCCCACCCGAGAACACCAAGTGGTGCTGCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

165

Amino Acids

18.53

Weight (kDa)

5.9

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02270 AT5G02270
fragaria_vesca	FvH4_6g08040
malus_domestica	MD03G1234700.v1.1 MD04G1190800.v1.1 MD12G1203100.v1.1
prunus_persica	Prupe.6G308800_v2.0.a1
pyrus_communis	pycom12g18950
rosa_chinensis	RchiOBHm_Chr2g0097941 RchiOBHm_Chr3g0457711 RchiOBHm_Chr5g0083331 RchiOBHm_Chr7g0234131
rosa_laevigata	RLG00000019926 RLG00000025192
rosa_multiflora	Rmu_sc0000566.1_g000046 Rmu_sc0001301.1_g000082 Rmu_sc0002068.1_g000007 Rmu_sc0004502.1_g000016 Rmu_sc0005743.1_g000009 Rmu_sc0007131.1_g000011 Rmu_sc0007395.1_g000002 Rmu_sc0028418.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370790 Rroxscaffold_6G00421550 Rroxscaffold_7G00180370
rosa_rugosa	Rorug03G0022700 Rorug05G0320000 Rorug06G0006300 Rorug06G0405000
rosa_samantha	Rh2AG292200 Rh2DG120300 Rh2DG432800 Rh3AG083500 Rh3BG086000 Rh3CG086300 Rh3DG086900 Rh4BG183300 Rh6BG113400 Rh6CG111600 Rh6DG101300 Rh7CG459900 Rh7DG392600 Rh7DG481700
rosa_wichuraiana	Rw3G007150 Rw5G007850 Rw7G033040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	372
AccBSI	CCGCTC	1 cut(s)	86
AccI	GTMKAC	1 cut(s)	36
AccII	CGCG	1 cut(s)	419
AciI	CCGC	4 cut(s)	84, 120, 130, 359
AclWI	GGATC	2 cut(s)	234, 297
AcuI	CTGAAG	1 cut(s)	462
AdeI	CACNNNGTG	1 cut(s)	480
AfaI	GTAC	1 cut(s)	113
AfiI	CCNNNNNNNGG	2 cut(s)	46, 58
AjiI	CACGTC	1 cut(s)	139
AjuI	GAANNNNNNNTTGG	2 cut(s)	443, 475
AluBI	AGCT	1 cut(s)	96
AluI	AGCT	1 cut(s)	96
AlwI	GGATC	2 cut(s)	234, 297
Ama87I	CYCGRG	1 cut(s)	467
ApeKI	GCWGC	2 cut(s)	486, 489
ArsI	GACNNNNNNTTYG	2 cut(s)	128, 160
AspS9I	GGNCC	4 cut(s)	49, 274, 337, 361
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	2 cut(s)	82, 146
AsuNHI	GCTAGC	1 cut(s)	349
AvaI	CYCGRG	1 cut(s)	467
AvaII	GGWCC	4 cut(s)	49, 274, 337, 361
AxyI	CCTNAGG	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	473, 476
BccI	CCATC	2 cut(s)	166, 251
BcgI	CGANNNNNNTGC	2 cut(s)	435, 469
BclI	TGATCA	3 cut(s)	195, 207, 408
BcnI	CCSGG	1 cut(s)	53
BfaI	CTAG	1 cut(s)	350
BfuAI	ACCTGC	1 cut(s)	372
BglII	AGATCT	1 cut(s)	279
BisI	GCNGC	2 cut(s)	487, 490
BlsI	GCNGC	2 cut(s)	488, 491
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	4 cut(s)	49, 274, 337, 361
BmeT110I	CYCGRG	1 cut(s)	467
BmgBI	CACGTC	1 cut(s)	139
BmgT120I	GGNCC	4 cut(s)	49, 274, 337, 361
BmiI	GGNNCC	1 cut(s)	275
BmrFI	CCNGG	1 cut(s)	53
BmtI	GCTAGC	1 cut(s)	353
BpmI	CTGGAG	1 cut(s)	353
BpuEI	CTTGAG	1 cut(s)	397
BpuMI	CCSGG	1 cut(s)	53
BsaBI	GATNNNNATC	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 58
Bse1I	ACTGG	1 cut(s)	370
Bse21I	CCTNAGG	1 cut(s)	8
Bse3DI	GCAATG	1 cut(s)	435
Bse8I	GATNNNNATC	1 cut(s)	225
BseGI	GGATG	1 cut(s)	181
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	2 cut(s)	46, 58
BseMI	GCAATG	1 cut(s)	435
BseMII	CTCAG	1 cut(s)	22
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	1 cut(s)	407
BseXI	GCAGC	2 cut(s)	473, 476
BseYI	CCCAGC	1 cut(s)	41
Bsh1236I	CGCG	1 cut(s)	419
BsiHKCI	CYCGRG	1 cut(s)	467
BsiSI	CCGG	2 cut(s)	52, 99
BslI	CCNNNNNNNGG	2 cut(s)	46, 58
BsoBI	CYCGRG	1 cut(s)	467
Bsp143I	GATC	8 cut(s)	3, 195, 207, 226, 279, 289, 327, 408
BspACI	CCGC	4 cut(s)	84, 120, 130, 359
BspCNI	CTCAG	1 cut(s)	21
BspFNI	CGCG	1 cut(s)	419
BspLI	GGNNCC	1 cut(s)	275
BspMI	ACCTGC	1 cut(s)	372
BspOI	GCTAGC	1 cut(s)	353
BspPI	GGATC	2 cut(s)	234, 297
BsrBI	CCGCTC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	435
BsrI	ACTGG	1 cut(s)	370
BssMI	GATC	8 cut(s)	3, 195, 207, 226, 279, 289, 327, 408
Bst4CI	ACNGT	1 cut(s)	334
BstC8I	GCNNGC	2 cut(s)	26, 351
BstDEI	CTNAG	3 cut(s)	8, 253, 296
BstF5I	GGATG	1 cut(s)	181
BstFNI	CGCG	1 cut(s)	419
BstKTI	GATC	8 cut(s)	6, 198, 210, 229, 282, 292, 330, 411
BstMBI	GATC	8 cut(s)	3, 195, 207, 226, 279, 289, 327, 408
BstSCI	CCNGG	1 cut(s)	51
BstUI	CGCG	1 cut(s)	419
BstV1I	GCAGC	2 cut(s)	473, 476
BstX2I	RGATCY	3 cut(s)	226, 279, 289
BstYI	RGATCY	3 cut(s)	226, 279, 289
Bsu36I	CCTNAGG	1 cut(s)	8
BtrI	CACGTC	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	181
BveI	ACCTGC	1 cut(s)	372
Cac8I	GCNNGC	2 cut(s)	26, 351
Cfr13I	GGNCC	4 cut(s)	49, 274, 337, 361
CseI	GACGC	1 cut(s)	430
Csp6I	GTAC	1 cut(s)	112
CviAII	CATG	3 cut(s)	31, 46, 234
CviJI	RGCY	4 cut(s)	71, 96, 185, 205
CviKI_1	RGCY	4 cut(s)	71, 96, 185, 205
CviQI	GTAC	1 cut(s)	112
DdeI	CTNAG	3 cut(s)	8, 253, 296
DpnI	GATC	8 cut(s)	5, 197, 209, 228, 281, 291, 329, 410
DpnII	GATC	8 cut(s)	3, 195, 207, 226, 279, 289, 327, 408
DraIII	CACNNNGTG	1 cut(s)	480
EciI	GGCGGA	1 cut(s)	374
Eco47I	GGWCC	4 cut(s)	49, 274, 337, 361
Eco57I	CTGAAG	1 cut(s)	462
Eco81I	CCTNAGG	1 cut(s)	8
Eco88I	CYCGRG	1 cut(s)	467
FaeI	CATG	3 cut(s)	34, 49, 237
FaiI	YATR	9 cut(s)	32, 47, 224, 235, 246, 287, 304, 306, 407
FatI	CATG	3 cut(s)	30, 45, 233
FauI	CCCGC	1 cut(s)	123
FbaI	TGATCA	3 cut(s)	195, 207, 408
FblI	GTMKAC	1 cut(s)	36
Fnu4HI	GCNGC	2 cut(s)	487, 490
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	2 cut(s)	487, 490
FspBI	CTAG	1 cut(s)	350
GluI	GCNGC	2 cut(s)	487, 490
GsaI	CCCAGC	1 cut(s)	45
GsuI	CTGGAG	1 cut(s)	353
HapII	CCGG	2 cut(s)	52, 99
HgaI	GACGC	1 cut(s)	430
Hin1II	CATG	3 cut(s)	34, 49, 237
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	1 cut(s)	13
HpaII	CCGG	2 cut(s)	52, 99
HphI	GGTGA	2 cut(s)	82, 146
Hpy166II	GTNNAC	2 cut(s)	37, 337
Hpy188I	TCNGA	3 cut(s)	20, 165, 264
Hpy188III	TCNNGA	3 cut(s)	10, 277, 376
Hpy8I	GTNNAC	2 cut(s)	37, 337
Hpy99I	CGWCG	2 cut(s)	161, 424
HpyAV	CCTTC	2 cut(s)	264, 376
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4IV	ACGT	2 cut(s)	138, 159
HpyCH4V	TGCA	1 cut(s)	244
HpyF3I	CTNAG	3 cut(s)	8, 253, 296
HpySE526I	ACGT	2 cut(s)	138, 159
Hsp92II	CATG	3 cut(s)	34, 49, 237
Ksp22I	TGATCA	3 cut(s)	195, 207, 408
Kzo9I	GATC	8 cut(s)	3, 195, 207, 226, 279, 289, 327, 408
LmnI	GCTCC	3 cut(s)	101, 372, 394
Lsp1109I	GCAGC	2 cut(s)	473, 476
MaeI	CTAG	1 cut(s)	350
MaeII	ACGT	2 cut(s)	138, 159
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	8 cut(s)	5, 197, 209, 228, 281, 291, 329, 410
MbiI	CCGCTC	1 cut(s)	86
MboI	GATC	8 cut(s)	3, 195, 207, 226, 279, 289, 327, 408
MboII	GAAGA	1 cut(s)	279
MflI	RGATCY	3 cut(s)	226, 279, 289
MluCI	AATT	1 cut(s)	191
MmeI	TCCRAC	2 cut(s)	198, 456
MnlI	CCTC	8 cut(s)	14, 17, 125, 231, 348, 372, 385, 392
MspI	CCGG	2 cut(s)	52, 99
MspR9I	CCNGG	1 cut(s)	53
MvnI	CGCG	1 cut(s)	419
NciI	CCSGG	1 cut(s)	53
NdeII	GATC	8 cut(s)	3, 195, 207, 226, 279, 289, 327, 408
NheI	GCTAGC	1 cut(s)	349
NlaIII	CATG	3 cut(s)	34, 49, 237
NlaIV	GGNNCC	1 cut(s)	275
NmeAIII	GCCGAG	1 cut(s)	47
NmuCI	GTSAC	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	13
PkrI	GCNGC	2 cut(s)	488, 491
PspFI	CCCAGC	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	275
PspPI	GGNCC	4 cut(s)	49, 274, 337, 361
PsuI	RGATCY	3 cut(s)	226, 279, 289
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
SalI	GTCGAC	1 cut(s)	35
SatI	GCNGC	2 cut(s)	487, 490
Sau3AI	GATC	8 cut(s)	3, 195, 207, 226, 279, 289, 327, 408
Sau96I	GGNCC	4 cut(s)	49, 274, 337, 361
ScrFI	CCNGG	1 cut(s)	53
SinI	GGWCC	4 cut(s)	49, 274, 337, 361
SmlI	CTYRAG	1 cut(s)	376
SmoI	CTYRAG	1 cut(s)	376
Sse9I	AATT	1 cut(s)	191
SsiI	CCGC	4 cut(s)	84, 120, 130, 359
SspMI	CTAG	1 cut(s)	350
StyD4I	CCNGG	1 cut(s)	51
TaaI	ACNGT	1 cut(s)	334
TaiI	ACGT	2 cut(s)	141, 162
TaqI	TCGA	2 cut(s)	36, 156
TasI	AATT	1 cut(s)	191
TfiI	GAWTC	1 cut(s)	13
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	2 cut(s)	486, 489
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	1 cut(s)	222
VpaK11BI	GGWCC	4 cut(s)	49, 274, 337, 361
XmiI	GTMKAC	1 cut(s)	36
XspI	CTAG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.