Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001882

Physical Location & Seq

Genomic Coordinates Forward (+)

53814722 .. 53815592

Gene Structure 871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG392600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGCCTCACCACCCAAACTACCCTCCGATCCAAACTACCCTTTTCTCTCTCTCCGCCCAGCGCCAAGCCTCTAATCGACGACTTCTCCCTCACCCTCAACGTCGGCGACCGATGCCTACTCGTTGGATCCAACGGCACCTGAAAAACCATGATCCTCAGGATTCTCGGAGGCAAGCACATGGTCGACCCCAGCATGGTCAGGGTTCTGTGTCGCTCGGCTTTCCACGACACCACTCTCACGGCTTCGGCGACCTGTCGTACCTAAACGGAGAGTGGCGGCGTGACGTGGCGTTTGCTGGTTTCGACGTTTCTATACAGATGGATGTTTCGGCTGATAAATTGATCAACGGGGTAGCTGGCATTGACCCACAAAAGAGAGCTGAGCTGATCAAGGTGTTGGATATTGATCTTTCATGGAGGTTGCATAAGGTCTCAGATGGTCAGAGAAGAAGGGTCCAGATCTGTATGGATCTGCTCAAACCATATAAGGTGCTTTTGCTAGATGAGATCACGGTGGACCTTAATGTGTTAGCGAGGGCGGACCTGCTCCAGTTCTTGAGGAAGGAATGTGAGGAGCGAGGTGCTATGATCATTTACGCGACGCTATTTTCCAGCATTGCCAAAGCAGCCAAATCGTCTTTCCCACCCGACAACACCAAGTGGTGCTGCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

224

Amino Acids

25.7

Weight (kDa)

9.77

Isoelectric Point (pI)

52.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02270 AT5G02270
fragaria_vesca	FvH4_6g08040
malus_domestica	MD03G1234700.v1.1 MD04G1190800.v1.1 MD12G1203100.v1.1
prunus_persica	Prupe.6G308800_v2.0.a1
pyrus_communis	pycom12g18950
rosa_chinensis	RchiOBHm_Chr2g0097941 RchiOBHm_Chr3g0457711 RchiOBHm_Chr5g0083331 RchiOBHm_Chr7g0234131
rosa_laevigata	RLG00000019926 RLG00000025192
rosa_multiflora	Rmu_sc0000566.1_g000046 Rmu_sc0001301.1_g000082 Rmu_sc0002068.1_g000007 Rmu_sc0004502.1_g000016 Rmu_sc0005743.1_g000009 Rmu_sc0007131.1_g000011 Rmu_sc0007395.1_g000002 Rmu_sc0028418.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370790 Rroxscaffold_6G00421550 Rroxscaffold_7G00180370
rosa_rugosa	Rorug03G0022700 Rorug05G0320000 Rorug06G0006300 Rorug06G0405000
rosa_samantha	Rh2AG292200 Rh2DG120300 Rh2DG432800 Rh3AG083500 Rh3BG086000 Rh3CG086300 Rh3DG086900 Rh4BG183300 Rh6BG113400 Rh6CG111600 Rh6DG101300 Rh7CG459900 Rh7DG392600 Rh7DG481700
rosa_wichuraiana	Rw3G007150 Rw5G007850 Rw7G033040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	552
AccB1I	GGYRCC	1 cut(s)	135
AccI	GTMKAC	1 cut(s)	184
AccII	CGCG	1 cut(s)	599
AciI	CCGC	3 cut(s)	54, 277, 539
AclWI	GGATC	5 cut(s)	22, 121, 134, 146, 477
AdeI	CACNNNGTG	1 cut(s)	660
AfaI	GTAC	1 cut(s)	260
AfiI	CCNNNNNNNGG	1 cut(s)	194
AjiI	CACGTC	1 cut(s)	286
AjuI	GAANNNNNNNTTGG	2 cut(s)	623, 655
AluBI	AGCT	3 cut(s)	356, 380, 385
AluI	AGCT	3 cut(s)	356, 380, 385
Alw26I	GTCTC	1 cut(s)	436
AlwI	GGATC	5 cut(s)	22, 121, 134, 146, 477
ApeKI	GCWGC	3 cut(s)	626, 666, 669
ArsI	GACNNNNNNTTYG	2 cut(s)	275, 307
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	3 cut(s)	454, 517, 541
AsuHPI	GGTGA	1 cut(s)	83
AvaII	GGWCC	3 cut(s)	454, 517, 541
AxyI	CCTNAGG	1 cut(s)	156
BamHI	GGATCC	1 cut(s)	126
BanI	GGYRCC	1 cut(s)	135
BbvI	GCAGC	3 cut(s)	638, 653, 656
BccI	CCATC	2 cut(s)	313, 431
BceAI	ACGGC	2 cut(s)	149, 256
BcgI	CGANNNNNNTGC	2 cut(s)	615, 649
BclI	TGATCA	3 cut(s)	342, 387, 588
BcoDI	GTCTC	1 cut(s)	436
BfaI	CTAG	1 cut(s)	500
BfoI	RGCGCY	1 cut(s)	64
BfuAI	ACCTGC	1 cut(s)	552
BglII	AGATCT	1 cut(s)	459
BisI	GCNGC	4 cut(s)	278, 627, 667, 670
BlpI	GCTNAGC	1 cut(s)	381
BlsI	GCNGC	4 cut(s)	279, 628, 668, 671
Bme18I	GGWCC	3 cut(s)	454, 517, 541
BmgBI	CACGTC	1 cut(s)	286
BmgT120I	GGNCC	3 cut(s)	454, 517, 541
BmiI	GGNNCC	3 cut(s)	128, 137, 455
BmsI	GCATC	1 cut(s)	102
BpmI	CTGGAG	1 cut(s)	533
Bpu1102I	GCTNAGC	1 cut(s)	381
BpuEI	CTTGAG	1 cut(s)	577
BsaBI	GATNNNNATC	1 cut(s)	405
BsaI	GGTCTC	1 cut(s)	436
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	550
Bse21I	CCTNAGG	1 cut(s)	156
Bse3DI	GCAATG	1 cut(s)	615
Bse8I	GATNNNNATC	1 cut(s)	405
BseGI	GGATG	1 cut(s)	328
BseJI	GATNNNNATC	1 cut(s)	405
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMI	GCAATG	1 cut(s)	615
BseMII	CTCAG	3 cut(s)	170, 372, 447
BseNI	ACTGG	1 cut(s)	550
BseRI	GAGGAG	1 cut(s)	587
BseXI	GCAGC	3 cut(s)	638, 653, 656
BseYI	CCCAGC	2 cut(s)	57, 189
Bsh1236I	CGCG	1 cut(s)	599
Bsh1285I	CGRYCG	1 cut(s)	110
BshNI	GGYRCC	1 cut(s)	135
BsiEI	CGRYCG	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	436
Bso31I	GGTCTC	1 cut(s)	436
Bsp1720I	GCTNAGC	1 cut(s)	381
BspACI	CCGC	3 cut(s)	54, 277, 539
BspCNI	CTCAG	3 cut(s)	169, 373, 446
BspFNI	CGCG	1 cut(s)	599
BspLI	GGNNCC	3 cut(s)	128, 137, 455
BspMI	ACCTGC	1 cut(s)	552
BspPI	GGATC	5 cut(s)	22, 121, 134, 146, 477
BspT107I	GGYRCC	1 cut(s)	135
BspTNI	GGTCTC	1 cut(s)	436
BsrDI	GCAATG	1 cut(s)	615
BsrI	ACTGG	1 cut(s)	550
Bst4CI	ACNGT	1 cut(s)	514
BstC8I	GCNNGC	2 cut(s)	174, 358
BstDEI	CTNAG	3 cut(s)	156, 381, 433
BstF5I	GGATG	1 cut(s)	328
BstFNI	CGCG	1 cut(s)	599
BstH2I	RGCGCY	1 cut(s)	64
BstHHI	GCGC	1 cut(s)	63
BstMAI	GTCTC	1 cut(s)	436
BstMCI	CGRYCG	1 cut(s)	110
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 626
BstUI	CGCG	1 cut(s)	599
BstV1I	GCAGC	3 cut(s)	638, 653, 656
BstX2I	RGATCY	3 cut(s)	126, 459, 469
BstYI	RGATCY	3 cut(s)	126, 459, 469
Bsu36I	CCTNAGG	1 cut(s)	156
BtrI	CACGTC	1 cut(s)	286
BtsCI	GGATG	1 cut(s)	328
BveI	ACCTGC	1 cut(s)	552
Cac8I	GCNNGC	2 cut(s)	174, 358
CfoI	GCGC	1 cut(s)	63
Cfr13I	GGNCC	3 cut(s)	454, 517, 541
CseI	GACGC	1 cut(s)	610
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	4 cut(s)	149, 179, 194, 414
CviJI	RGCY	8 cut(s)	68, 219, 243, 332, 356, 380, 385, 629
CviKI_1	RGCY	8 cut(s)	68, 219, 243, 332, 356, 380, 385, 629
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	3 cut(s)	156, 381, 433
DraIII	CACNNNGTG	1 cut(s)	660
EciI	GGCGGA	2 cut(s)	43, 554
Eco31I	GGTCTC	1 cut(s)	436
Eco47I	GGWCC	3 cut(s)	454, 517, 541
Eco81I	CCTNAGG	1 cut(s)	156
FaeI	CATG	4 cut(s)	152, 182, 197, 417
FatI	CATG	4 cut(s)	148, 178, 193, 413
FbaI	TGATCA	3 cut(s)	342, 387, 588
FblI	GTMKAC	1 cut(s)	184
Fnu4HI	GCNGC	4 cut(s)	278, 627, 667, 670
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	4 cut(s)	278, 627, 667, 670
FspBI	CTAG	1 cut(s)	500
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	4 cut(s)	278, 627, 667, 670
GsaI	CCCAGC	2 cut(s)	61, 193
GsuI	CTGGAG	1 cut(s)	533
HaeII	RGCGCY	1 cut(s)	64
HgaI	GACGC	1 cut(s)	610
HhaI	GCGC	1 cut(s)	63
Hin1II	CATG	4 cut(s)	152, 182, 197, 417
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HincII	GTYRAC	1 cut(s)	185
HindII	GTYRAC	1 cut(s)	185
HinfI	GANTC	1 cut(s)	161
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	2 cut(s)	185, 517
Hpy188I	TCNGA	4 cut(s)	27, 168, 436, 444
Hpy188III	TCNNGA	3 cut(s)	158, 457, 556
Hpy8I	GTNNAC	2 cut(s)	185, 517
Hpy99I	CGWCG	4 cut(s)	81, 105, 308, 604
HpyAV	CCTTC	2 cut(s)	444, 556
HpyCH4III	ACNGT	1 cut(s)	514
HpyCH4IV	ACGT	3 cut(s)	100, 285, 306
HpyCH4V	TGCA	1 cut(s)	424
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 626
HpyF3I	CTNAG	3 cut(s)	156, 381, 433
HpySE526I	ACGT	3 cut(s)	100, 285, 306
Hsp92II	CATG	4 cut(s)	152, 182, 197, 417
HspAI	GCGC	1 cut(s)	61
Ksp22I	TGATCA	3 cut(s)	342, 387, 588
LmnI	GCTCC	2 cut(s)	552, 574
Lsp1109I	GCAGC	3 cut(s)	638, 653, 656
LweI	GCATC	1 cut(s)	102
MaeI	CTAG	1 cut(s)	500
MaeII	ACGT	3 cut(s)	100, 285, 306
MaeIII	GTNAC	1 cut(s)	281
MboII	GAAGA	1 cut(s)	459
MflI	RGATCY	3 cut(s)	126, 459, 469
MluCI	AATT	1 cut(s)	338
MmeI	TCCRAC	3 cut(s)	104, 154, 378
MseI	TTAA	1 cut(s)	522
MvnI	CGCG	1 cut(s)	599
MwoI	GCNNNNNNNGC	2 cut(s)	112, 626
NlaIII	CATG	4 cut(s)	152, 182, 197, 417
NlaIV	GGNNCC	3 cut(s)	128, 137, 455
NmeAIII	GCCGAG	1 cut(s)	195
NmuCI	GTSAC	1 cut(s)	281
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	161
PkrI	GCNGC	4 cut(s)	279, 628, 668, 671
PspFI	CCCAGC	2 cut(s)	57, 189
PspN4I	GGNNCC	3 cut(s)	128, 137, 455
PspPI	GGNCC	3 cut(s)	454, 517, 541
PsuI	RGATCY	3 cut(s)	126, 459, 469
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SalI	GTCGAC	1 cut(s)	183
SaqAI	TTAA	1 cut(s)	522
SatI	GCNGC	4 cut(s)	278, 627, 667, 670
Sau96I	GGNCC	3 cut(s)	454, 517, 541
SfaNI	GCATC	1 cut(s)	102
SinI	GGWCC	3 cut(s)	454, 517, 541
SmlI	CTYRAG	1 cut(s)	556
SmoI	CTYRAG	1 cut(s)	556
Sse9I	AATT	1 cut(s)	338
SsiI	CCGC	3 cut(s)	54, 277, 539
SspMI	CTAG	1 cut(s)	500
TaaI	ACNGT	1 cut(s)	514
TaiI	ACGT	3 cut(s)	103, 288, 309
TaqI	TCGA	3 cut(s)	76, 184, 303
TaqII	GACCGA	1 cut(s)	124
TasI	AATT	1 cut(s)	338
TauI	GCSGC	1 cut(s)	280
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	3 cut(s)	626, 666, 669
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	1 cut(s)	402
TspGWI	ACGGA	1 cut(s)	282
VpaK11BI	GGWCC	3 cut(s)	454, 517, 541
XmiI	GTMKAC	1 cut(s)	184
XspI	CTAG	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.