Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001882

Physical Location & Seq

Genomic Coordinates Reverse (-)

17653225 .. 17653542

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG113400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGATCCTCAGGATTCTCGGAGGCAAGTACTTGGTCGACCCCAGCATGGTCCGGGTTCTGGGTCGCTCGGCTTTCCACGACACCGCTCTCACCGGCTTCGGCGATCTGTCGTACCTAGGAAGAGAGTGGCGGCGTGATGTGGCGTTTGTTGGTTTCGACGTTCCGATACAGATGGATGTTTCGGCTGATAAATTGATCAACGGGGTAGCTAGGATTGACCCACAAAGGAGAGCTGAGCTGATCAAGGTGTTGGATATTGATCTTTCATGGAGGTTGCATATTCATCTCGGTTATGTAATTTTCGTTTTTGGACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

105

Amino Acids

11.94

Weight (kDa)

8.17

Isoelectric Point (pI)

30.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02270 AT5G02270
fragaria_vesca	FvH4_6g08040
malus_domestica	MD03G1234700.v1.1 MD04G1190800.v1.1 MD12G1203100.v1.1
prunus_persica	Prupe.6G308800_v2.0.a1
pyrus_communis	pycom12g18950
rosa_chinensis	RchiOBHm_Chr2g0097941 RchiOBHm_Chr3g0457711 RchiOBHm_Chr5g0083331 RchiOBHm_Chr7g0234131
rosa_laevigata	RLG00000019926 RLG00000025192
rosa_multiflora	Rmu_sc0000566.1_g000046 Rmu_sc0001301.1_g000082 Rmu_sc0002068.1_g000007 Rmu_sc0004502.1_g000016 Rmu_sc0005743.1_g000009 Rmu_sc0007131.1_g000011 Rmu_sc0007395.1_g000002 Rmu_sc0028418.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370790 Rroxscaffold_6G00421550 Rroxscaffold_7G00180370
rosa_rugosa	Rorug03G0022700 Rorug05G0320000 Rorug06G0006300 Rorug06G0405000
rosa_samantha	Rh2AG292200 Rh2DG120300 Rh2DG432800 Rh3AG083500 Rh3BG086000 Rh3CG086300 Rh3DG086900 Rh4BG183300 Rh6BG113400 Rh6CG111600 Rh6DG101300 Rh7CG459900 Rh7DG392600 Rh7DG481700
rosa_wichuraiana	Rw3G007150 Rw5G007850 Rw7G033040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	86
AccI	GTMKAC	1 cut(s)	36
AciI	CCGC	2 cut(s)	84, 130
AfaI	GTAC	2 cut(s)	29, 113
AfiI	CCNNNNNNNGG	2 cut(s)	46, 58
AluBI	AGCT	3 cut(s)	209, 233, 238
AluI	AGCT	3 cut(s)	209, 233, 238
AspA2I	CCTAGG	1 cut(s)	115
AspS9I	GGNCC	1 cut(s)	49
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	82
AvaII	GGWCC	1 cut(s)	49
AvrII	CCTAGG	1 cut(s)	115
AxyI	CCTNAGG	1 cut(s)	8
BccI	CCATC	1 cut(s)	166
BclI	TGATCA	2 cut(s)	195, 240
BcnI	CCSGG	1 cut(s)	53
BfaI	CTAG	2 cut(s)	116, 210
BisI	GCNGC	1 cut(s)	131
BlnI	CCTAGG	1 cut(s)	115
BlpI	GCTNAGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	132
BmcAI	AGTACT	1 cut(s)	29
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	53
Bpu1102I	GCTNAGC	1 cut(s)	234
BpuMI	CCSGG	1 cut(s)	53
BsaBI	GATNNNNATC	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	115
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 58
Bse118I	RCCGGY	1 cut(s)	92
Bse21I	CCTNAGG	1 cut(s)	8
Bse8I	GATNNNNATC	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	115
BseGI	GGATG	1 cut(s)	181
BseJI	GATNNNNATC	1 cut(s)	258
BseLI	CCNNNNNNNGG	2 cut(s)	46, 58
BseMII	CTCAG	2 cut(s)	22, 225
BseYI	CCCAGC	1 cut(s)	41
BsiSI	CCGG	2 cut(s)	52, 93
BslI	CCNNNNNNNGG	2 cut(s)	46, 58
Bsp143I	GATC	5 cut(s)	3, 103, 195, 240, 259
Bsp1720I	GCTNAGC	1 cut(s)	234
BspACI	CCGC	2 cut(s)	84, 130
BspCNI	CTCAG	2 cut(s)	21, 226
BsrBI	CCGCTC	1 cut(s)	86
BsrFI	RCCGGY	1 cut(s)	92
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	5 cut(s)	3, 103, 195, 240, 259
BssT1I	CCWWGG	1 cut(s)	115
Bst6I	CTCTTC	1 cut(s)	115
BstDEI	CTNAG	2 cut(s)	8, 234
BstF5I	GGATG	1 cut(s)	181
BstKTI	GATC	5 cut(s)	6, 106, 198, 243, 262
BstMBI	GATC	5 cut(s)	3, 103, 195, 240, 259
BstSCI	CCNGG	1 cut(s)	51
Bsu36I	CCTNAGG	1 cut(s)	8
BtsCI	GGATG	1 cut(s)	181
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	49
Csp6I	GTAC	2 cut(s)	28, 112
CviAII	CATG	2 cut(s)	46, 267
CviJI	RGCY	6 cut(s)	71, 96, 185, 209, 233, 238
CviKI_1	RGCY	6 cut(s)	71, 96, 185, 209, 233, 238
CviQI	GTAC	2 cut(s)	28, 112
DdeI	CTNAG	2 cut(s)	8, 234
DpnI	GATC	5 cut(s)	5, 105, 197, 242, 261
DpnII	GATC	5 cut(s)	3, 103, 195, 240, 259
Eam1104I	CTCTTC	1 cut(s)	115
EarI	CTCTTC	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	115
Eco47I	GGWCC	1 cut(s)	49
Eco81I	CCTNAGG	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	2 cut(s)	49, 270
FaiI	YATR	4 cut(s)	47, 268, 279, 294
FatI	CATG	2 cut(s)	45, 266
FbaI	TGATCA	2 cut(s)	195, 240
FblI	GTMKAC	1 cut(s)	36
Fnu4HI	GCNGC	1 cut(s)	131
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	1 cut(s)	131
FspBI	CTAG	2 cut(s)	116, 210
GluI	GCNGC	1 cut(s)	131
GsaI	CCCAGC	1 cut(s)	45
HapII	CCGG	2 cut(s)	52, 93
Hin1II	CATG	2 cut(s)	49, 270
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	1 cut(s)	13
HpaII	CCGG	2 cut(s)	52, 93
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	2 cut(s)	20, 165
Hpy188III	TCNNGA	1 cut(s)	10
Hpy8I	GTNNAC	1 cut(s)	37
Hpy99I	CGWCG	1 cut(s)	161
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	1 cut(s)	277
HpyF3I	CTNAG	2 cut(s)	8, 234
HpySE526I	ACGT	1 cut(s)	159
Hsp92II	CATG	2 cut(s)	49, 270
Ksp22I	TGATCA	2 cut(s)	195, 240
Kzo9I	GATC	5 cut(s)	3, 103, 195, 240, 259
LpnPI	CCDG	4 cut(s)	44, 55, 65, 106
MaeI	CTAG	2 cut(s)	116, 210
MaeII	ACGT	1 cut(s)	159
MalI	GATC	5 cut(s)	5, 105, 197, 242, 261
MbiI	CCGCTC	1 cut(s)	86
MboI	GATC	5 cut(s)	3, 103, 195, 240, 259
MboII	GAAGA	1 cut(s)	132
MluCI	AATT	2 cut(s)	191, 297
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	3 cut(s)	14, 17, 264
MspI	CCGG	2 cut(s)	52, 93
MspR9I	CCNGG	1 cut(s)	53
NciI	CCSGG	1 cut(s)	53
NdeII	GATC	5 cut(s)	3, 103, 195, 240, 259
NlaIII	CATG	2 cut(s)	49, 270
NmeAIII	GCCGAG	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	13
PkrI	GCNGC	1 cut(s)	132
PspFI	CCCAGC	1 cut(s)	41
PspPI	GGNCC	1 cut(s)	49
RsaI	GTAC	2 cut(s)	29, 113
RsaNI	GTAC	2 cut(s)	28, 112
SalI	GTCGAC	1 cut(s)	35
SatI	GCNGC	1 cut(s)	131
Sau3AI	GATC	5 cut(s)	3, 103, 195, 240, 259
Sau96I	GGNCC	1 cut(s)	49
ScaI	AGTACT	1 cut(s)	29
ScrFI	CCNGG	1 cut(s)	53
SetI	ASST	7 cut(s)	117, 162, 211, 235, 240, 249, 275
SinI	GGWCC	1 cut(s)	49
Sse9I	AATT	2 cut(s)	191, 297
SsiI	CCGC	2 cut(s)	84, 130
SspMI	CTAG	2 cut(s)	116, 210
StyD4I	CCNGG	1 cut(s)	51
StyI	CCWWGG	1 cut(s)	115
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	2 cut(s)	36, 156
TasI	AATT	2 cut(s)	191, 297
TatI	WGTACW	1 cut(s)	27
TauI	GCSGC	1 cut(s)	133
TfiI	GAWTC	1 cut(s)	13
TspDTI	ATGAA	2 cut(s)	255, 272
VpaK11BI	GGWCC	1 cut(s)	49
XmaJI	CCTAGG	1 cut(s)	115
XmiI	GTMKAC	1 cut(s)	36
XspI	CTAG	2 cut(s)	116, 210
ZrmI	AGTACT	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.