Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001882

Physical Location & Seq

Genomic Coordinates Reverse (-)

8338988 .. 8340089

Gene Structure 1102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G007850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGATCCTCAGGATGGTCGACCCCAGCATGGTCAGGGTTCTGGGTCGCTCGGCTTTCCACGACACTGCTCTCACCTGCTTCGGCGACATGTCGTACCTAGACGGAGAGTGGCGGAGTGACGTGGCGTTTGCTGGTTTCGACGTTCCGATACAGATGGATGTTTCGGCTGATAAATTGATCAACGGGGTAGCTGGGATTGACCCACAAAAGAGAGCTGAGCTGATCAAGGTGTTGGATATTGATCTTTCATGGAGGTTGCATAAGGTCTCAGATGGTCAGAGAAGAAGGGTCCAGATCTATATGGATGTGCTCACTCACATATTCAGCTCGGTGCTTCTGCTTGATGTGATCACGGTGGACCTTAATGTGCTAGCGAGGGCGGACCTGCTCCAGTTCTTGAGGAAGGACTGTGAGGAGCGAGGTGCTATGATCATTTATGTGACGCTATTTTCCAACATTGCCAAAGCACCCAAATCGTCTTTCCCACCCGACAACACCCCAAATCGTCTTTCCCACCCGACAACACCAAGTGGTGCTGCTGCTGACTCAACCCAACCGATGAGCCTGGTACCAAGCTTCCGTTTCTCAAGCCCCAAAAGGGAGAGAGAGAGTCTAAGACTCAGATCGGAGGGGGAGAGAGAGAATGGTAGTTTTGGAAGAGAAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

222

Amino Acids

24.88

Weight (kDa)

6.43

Isoelectric Point (pI)

47.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02270 AT5G02270
fragaria_vesca	FvH4_6g08040
malus_domestica	MD03G1234700.v1.1 MD04G1190800.v1.1 MD12G1203100.v1.1
prunus_persica	Prupe.6G308800_v2.0.a1
pyrus_communis	pycom12g18950
rosa_chinensis	RchiOBHm_Chr2g0097941 RchiOBHm_Chr3g0457711 RchiOBHm_Chr5g0083331 RchiOBHm_Chr7g0234131
rosa_laevigata	RLG00000019926 RLG00000025192
rosa_multiflora	Rmu_sc0000566.1_g000046 Rmu_sc0001301.1_g000082 Rmu_sc0002068.1_g000007 Rmu_sc0004502.1_g000016 Rmu_sc0005743.1_g000009 Rmu_sc0007131.1_g000011 Rmu_sc0007395.1_g000002 Rmu_sc0028418.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370790 Rroxscaffold_6G00421550 Rroxscaffold_7G00180370
rosa_rugosa	Rorug03G0022700 Rorug05G0320000 Rorug06G0006300 Rorug06G0405000
rosa_samantha	Rh2AG292200 Rh2DG120300 Rh2DG432800 Rh3AG083500 Rh3BG086000 Rh3CG086300 Rh3DG086900 Rh4BG183300 Rh6BG113400 Rh6CG111600 Rh6DG101300 Rh7CG459900 Rh7DG392600 Rh7DG481700
rosa_wichuraiana	Rw3G007150 Rw5G007850 Rw7G033040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	83
Acc36I	ACCTGC	2 cut(s)	83, 393
Acc65I	GGTACC	1 cut(s)	568
AccB1I	GGYRCC	1 cut(s)	568
AccI	GTMKAC	1 cut(s)	18
AciI	CCGC	2 cut(s)	112, 380
AdeI	CACNNNGTG	1 cut(s)	530
AfaI	GTAC	2 cut(s)	95, 570
AfiI	CCNNNNNNNGG	3 cut(s)	13, 28, 598
AflIII	ACRYGT	1 cut(s)	87
AjiI	CACGTC	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	564
AjuI	GAANNNNNNNTTGG	4 cut(s)	464, 493, 496, 525
AluBI	AGCT	5 cut(s)	191, 215, 220, 327, 576
AluI	AGCT	5 cut(s)	191, 215, 220, 327, 576
Alw21I	GWGCWC	1 cut(s)	312
Alw26I	GTCTC	1 cut(s)	271
ApeKI	GCWGC	2 cut(s)	536, 539
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
Asp718I	GGTACC	1 cut(s)	568
AspS9I	GGNCC	3 cut(s)	289, 358, 382
AsuHPI	GGTGA	1 cut(s)	64
AsuNHI	GCTAGC	1 cut(s)	370
AvaII	GGWCC	3 cut(s)	289, 358, 382
AxyI	CCTNAGG	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	568
Bbv12I	GWGCWC	1 cut(s)	312
BbvI	GCAGC	2 cut(s)	523, 526
BccI	CCATC	3 cut(s)	7, 148, 266
BcgI	CGANNNNNNTGC	2 cut(s)	456, 490
BciT130I	CCWGG	1 cut(s)	566
BclI	TGATCA	4 cut(s)	177, 222, 348, 429
BcoDI	GTCTC	1 cut(s)	271
BfaI	CTAG	2 cut(s)	98, 371
BfuAI	ACCTGC	2 cut(s)	83, 393
BglII	AGATCT	1 cut(s)	294
BisI	GCNGC	2 cut(s)	537, 540
BlpI	GCTNAGC	1 cut(s)	216
BlsI	GCNGC	2 cut(s)	538, 541
Bme1390I	CCNGG	1 cut(s)	566
Bme18I	GGWCC	3 cut(s)	289, 358, 382
BmgBI	CACGTC	1 cut(s)	121
BmgT120I	GGNCC	3 cut(s)	289, 358, 382
BmiI	GGNNCC	2 cut(s)	290, 570
BmrFI	CCNGG	1 cut(s)	566
BmtI	GCTAGC	1 cut(s)	374
BpmI	CTGGAG	1 cut(s)	374
Bpu1102I	GCTNAGC	1 cut(s)	216
BpuEI	CTTGAG	2 cut(s)	418, 571
BsaBI	GATNNNNATC	1 cut(s)	240
BsaI	GGTCTC	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 28, 598
Bse1I	ACTGG	1 cut(s)	391
Bse21I	CCTNAGG	1 cut(s)	8
Bse3DI	GCAATG	1 cut(s)	456
Bse8I	GATNNNNATC	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	566
BseGI	GGATG	3 cut(s)	18, 163, 310
BseJI	GATNNNNATC	1 cut(s)	240
BseLI	CCNNNNNNNGG	3 cut(s)	13, 28, 598
BseMI	GCAATG	1 cut(s)	456
BseMII	CTCAG	4 cut(s)	22, 207, 282, 634
BseNI	ACTGG	1 cut(s)	391
BseRI	GAGGAG	1 cut(s)	428
BseXI	GCAGC	2 cut(s)	523, 526
BseYI	CCCAGC	2 cut(s)	23, 191
BshNI	GGYRCC	1 cut(s)	568
BsiHKAI	GWGCWC	1 cut(s)	312
BslI	CCNNNNNNNGG	3 cut(s)	13, 28, 598
BsmAI	GTCTC	1 cut(s)	271
Bso31I	GGTCTC	1 cut(s)	271
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp143I	GATC	8 cut(s)	3, 177, 222, 241, 294, 348, 429, 623
Bsp1720I	GCTNAGC	1 cut(s)	216
BspACI	CCGC	2 cut(s)	112, 380
BspCNI	CTCAG	4 cut(s)	21, 208, 281, 633
BspLI	GGNNCC	2 cut(s)	290, 570
BspMI	ACCTGC	2 cut(s)	83, 393
BspOI	GCTAGC	1 cut(s)	374
BspT107I	GGYRCC	1 cut(s)	568
BspTNI	GGTCTC	1 cut(s)	271
BsrDI	GCAATG	1 cut(s)	456
BsrI	ACTGG	1 cut(s)	391
BssMI	GATC	8 cut(s)	3, 177, 222, 241, 294, 348, 429, 623
Bst2UI	CCWGG	1 cut(s)	566
Bst4CI	ACNGT	2 cut(s)	355, 410
Bst6I	CTCTTC	1 cut(s)	652
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	5 cut(s)	8, 216, 268, 614, 620
BstF5I	GGATG	3 cut(s)	18, 163, 310
BstKTI	GATC	8 cut(s)	6, 180, 225, 244, 297, 351, 432, 626
BstMAI	GTCTC	1 cut(s)	271
BstMBI	GATC	8 cut(s)	3, 177, 222, 241, 294, 348, 429, 623
BstNI	CCWGG	1 cut(s)	566
BstNSI	RCATGY	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	564
BstV1I	GCAGC	2 cut(s)	523, 526
BstX2I	RGATCY	1 cut(s)	294
BstYI	RGATCY	1 cut(s)	294
Bsu36I	CCTNAGG	1 cut(s)	8
BtrI	CACGTC	1 cut(s)	121
BtsCI	GGATG	3 cut(s)	18, 163, 310
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	63
BveI	ACCTGC	2 cut(s)	83, 393
Cac8I	GCNNGC	1 cut(s)	372
Cfr13I	GGNCC	3 cut(s)	289, 358, 382
CseI	GACGC	1 cut(s)	451
Csp6I	GTAC	2 cut(s)	94, 569
CviAII	CATG	3 cut(s)	28, 88, 249
CviJI	RGCY	9 cut(s)	53, 167, 191, 215, 220, 327, 564, 576, 591
CviKI_1	RGCY	9 cut(s)	53, 167, 191, 215, 220, 327, 564, 576, 591
CviQI	GTAC	2 cut(s)	94, 569
DdeI	CTNAG	5 cut(s)	8, 216, 268, 614, 620
DpnI	GATC	8 cut(s)	5, 179, 224, 243, 296, 350, 431, 625
DpnII	GATC	8 cut(s)	3, 177, 222, 241, 294, 348, 429, 623
DraIII	CACNNNGTG	1 cut(s)	530
Eam1104I	CTCTTC	1 cut(s)	652
EarI	CTCTTC	1 cut(s)	652
EciI	GGCGGA	2 cut(s)	127, 395
Eco31I	GGTCTC	1 cut(s)	271
Eco47I	GGWCC	3 cut(s)	289, 358, 382
Eco81I	CCTNAGG	1 cut(s)	8
EcoRII	CCWGG	1 cut(s)	564
FaeI	CATG	3 cut(s)	31, 91, 252
FatI	CATG	3 cut(s)	27, 87, 248
FbaI	TGATCA	4 cut(s)	177, 222, 348, 429
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	2 cut(s)	537, 540
FokI	GGATG	3 cut(s)	25, 170, 317
Fsp4HI	GCNGC	2 cut(s)	537, 540
FspBI	CTAG	2 cut(s)	98, 371
GluI	GCNGC	2 cut(s)	537, 540
GsaI	CCCAGC	2 cut(s)	27, 195
GsuI	CTGGAG	1 cut(s)	374
HgaI	GACGC	1 cut(s)	451
Hin1II	CATG	3 cut(s)	31, 91, 252
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HindIII	AAGCTT	1 cut(s)	574
HinfI	GANTC	3 cut(s)	545, 610, 618
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	2 cut(s)	19, 358
Hpy188I	TCNGA	5 cut(s)	147, 271, 279, 623, 628
Hpy188III	TCNNGA	3 cut(s)	10, 292, 397
Hpy8I	GTNNAC	2 cut(s)	19, 358
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	2 cut(s)	279, 397
HpyCH4III	ACNGT	2 cut(s)	355, 410
HpyCH4IV	ACGT	2 cut(s)	120, 141
HpyCH4V	TGCA	1 cut(s)	259
HpyF3I	CTNAG	5 cut(s)	8, 216, 268, 614, 620
HpySE526I	ACGT	2 cut(s)	120, 141
Hsp92II	CATG	3 cut(s)	31, 91, 252
KpnI	GGTACC	1 cut(s)	572
Ksp22I	TGATCA	4 cut(s)	177, 222, 348, 429
Kzo9I	GATC	8 cut(s)	3, 177, 222, 241, 294, 348, 429, 623
LmnI	GCTCC	2 cut(s)	393, 415
Lsp1109I	GCAGC	2 cut(s)	523, 526
MaeI	CTAG	2 cut(s)	98, 371
MaeII	ACGT	2 cut(s)	120, 141
MaeIII	GTNAC	2 cut(s)	116, 439
MalI	GATC	8 cut(s)	5, 179, 224, 243, 296, 350, 431, 625
MboI	GATC	8 cut(s)	3, 177, 222, 241, 294, 348, 429, 623
MboII	GAAGA	2 cut(s)	294, 669
MflI	RGATCY	1 cut(s)	294
MhlI	GDGCHC	1 cut(s)	312
MluCI	AATT	1 cut(s)	173
MlyI	GAGTC	3 cut(s)	539, 612, 619
MmeI	TCCRAC	2 cut(s)	213, 477
MnlI	CCTC	7 cut(s)	17, 246, 369, 393, 406, 413, 622
MseI	TTAA	1 cut(s)	363
MslI	CAYNNNNRTG	1 cut(s)	437
MspR9I	CCNGG	1 cut(s)	566
MvaI	CCWGG	1 cut(s)	566
NdeII	GATC	8 cut(s)	3, 177, 222, 241, 294, 348, 429, 623
NheI	GCTAGC	1 cut(s)	370
NlaIII	CATG	3 cut(s)	31, 91, 252
NlaIV	GGNNCC	2 cut(s)	290, 570
NmeAIII	GCCGAG	1 cut(s)	29
NmuCI	GTSAC	2 cut(s)	116, 439
NspI	RCATGY	1 cut(s)	91
PaqCI	CACCTGC	1 cut(s)	83
PciI	ACATGT	1 cut(s)	87
PkrI	GCNGC	2 cut(s)	538, 541
PleI	GAGTC	3 cut(s)	539, 612, 618
PpsI	GAGTC	3 cut(s)	539, 612, 618
PscI	ACATGT	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	564
PspFI	CCCAGC	2 cut(s)	23, 191
PspGI	CCWGG	1 cut(s)	564
PspN4I	GGNNCC	2 cut(s)	290, 570
PspPI	GGNCC	3 cut(s)	289, 358, 382
PsuI	RGATCY	1 cut(s)	294
RsaI	GTAC	2 cut(s)	95, 570
RsaNI	GTAC	2 cut(s)	94, 569
RseI	CAYNNNNRTG	1 cut(s)	437
SalI	GTCGAC	1 cut(s)	17
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	2 cut(s)	537, 540
Sau3AI	GATC	8 cut(s)	3, 177, 222, 241, 294, 348, 429, 623
Sau96I	GGNCC	3 cut(s)	289, 358, 382
SchI	GAGTC	3 cut(s)	539, 612, 619
ScrFI	CCNGG	1 cut(s)	566
SduI	GDGCHC	1 cut(s)	312
SinI	GGWCC	3 cut(s)	289, 358, 382
SmiMI	CAYNNNNRTG	1 cut(s)	437
SmlI	CTYRAG	2 cut(s)	397, 586
SmoI	CTYRAG	2 cut(s)	397, 586
Sse9I	AATT	1 cut(s)	173
SsiI	CCGC	2 cut(s)	112, 380
SspMI	CTAG	2 cut(s)	98, 371
StyD4I	CCNGG	1 cut(s)	564
TaaI	ACNGT	2 cut(s)	355, 410
TaiI	ACGT	2 cut(s)	123, 144
TaqI	TCGA	2 cut(s)	18, 138
TasI	AATT	1 cut(s)	173
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	1 cut(s)	70
TseFI	GTSAC	2 cut(s)	116, 439
TseI	GCWGC	2 cut(s)	536, 539
Tsp45I	GTSAC	2 cut(s)	116, 439
TspDTI	ATGAA	1 cut(s)	237
TspGWI	ACGGA	2 cut(s)	117, 569
TspRI	CASTG	1 cut(s)	70
VpaK11BI	GGWCC	3 cut(s)	289, 358, 382
XceI	RCATGY	1 cut(s)	91
XmiI	GTMKAC	1 cut(s)	18
XspI	CTAG	2 cut(s)	98, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.