FvH4_6g08040

ABC transporter I family member

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
4782323 .. 4784213
1891 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g08040.t1

Sequence Viewer

Length: 957 bp
ATGGGCGTCAAGCAAGACTCCGATCCAACGATCGTGATCAACCGCCTCAAATTCACCTACCCTGGAATCAACGGCCACCCGCCGCCCGGCGCCAAGCCTCTCATCGACGACTTCTCCCTCACCCTCAACGCCGGCGAGCGATGCCTCCTCGTTGGATCCAACGGCGCCGGCAAAACCACCATCCTCAAGATCCTCGGAGGGAAGCACATGGTCGACCCCACCATGGTCCGTGTCCTCGGCCGGTCGGCTTTCCACGACACCGCTCTCACCGGCTCCGGCGACCTCTCGTATCTCGGCGGGGAGTGGCGCCGTGACGTGGCGTTTGCTGGGTTCGACGTTCCGATACAGATGGATGTTTCGGCTGAGAAATTGATCAACGGTGTGGCTGGGATTGACCCTAAAAGAAGAGCTGAGCTGATCAAGGTGTTGGATATTGATCTCTCATGGCGGTTGCACAAGGTCTCCGATGGTCAGAGAAGACGGGTCCAGATCTGTATGGGGCTTCTCAGACCATACAAGGTGCTTCTGCTCGATGAGATCACGGTGGACCTTGACGTGCTTGCGAGGGCGGACCTGCTCACGTTCTTGAAGAAGGAATGTGAGGAGAGAGGCGCTACGATCATTTACGCGACGCATATATTTGATGGATTGGAGAATTGGCCGTCACACATTATGTATGTTGCTAATGGGAAGCTGCAATTGTCGATGCCGATGGACAAGGTTAAGGAGACGTACAAGCTCTCACTCATGAGGACGGTTGAGAGTTGGCTGAGGAAGGAGCGTGACGAGGAGAGGGCGAGAAGGAAAGAGAGGAAGGCGAAAGGTCTTCCCGAGTTTGATGAACAAATTGAGGGAAGTCGGGTAATTAATAATGGTTGGGCGGCTGGGCGCCTCAACTCCACCGTTGCCGGTGAAGAAAACTTTGTCTTGAGCTCAAACAGAGTTCTCAGGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

319

Amino Acids

35.59

Weight (kDa)

9.01

Isoelectric Point (pI)

37.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 36 - 181 7.8e-17 ABC transporter
AAA_21 PF13304 149 - 212 2.9e-08 AAA domain, putative AbiEii toxin, Type IV TA system
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 582
AccB1I GGYRCC 4 cut(s) 89, 164, 306, 888
AccBSI CCGCTC 1 cut(s) 263
AccI GTMKAC 1 cut(s) 213
AccII CGCG 1 cut(s) 629
AciI CCGC 8 cut(s) 43, 80, 83, 261, 297, 448, 569, 881
AclWI GGATC 4 cut(s) 17, 150, 163, 184
AcoI YGGCCR 3 cut(s) 73, 238, 659
AcsI RAATTY 1 cut(s) 50
AcyI GRCGYC 5 cut(s) 6, 90, 165, 307, 889
AfaI GTAC 1 cut(s) 734
AfiI CCNNNNNNNGG 3 cut(s) 86, 223, 316
AgsI TTSAA 1 cut(s) 589
AjiI CACGTC 2 cut(s) 316, 556
AjnI CCWGG 1 cut(s) 61
AluBI AGCT 5 cut(s) 410, 415, 694, 739, 933
AluI AGCT 5 cut(s) 410, 415, 694, 739, 933
Alw21I GWGCWC 1 cut(s) 935
Alw26I GTCTC 2 cut(s) 466, 722
AlwI GGATC 4 cut(s) 17, 150, 163, 184
Ama87I CYCGRG 1 cut(s) 830
AoxI GGCC 3 cut(s) 73, 238, 659
ApeKI GCWGC 1 cut(s) 694
ApoI RAATTY 1 cut(s) 50
ArsI GACNNNNNNTTYG 2 cut(s) 305, 337
AseI ATTAAT 1 cut(s) 867
AspLEI GCGC 5 cut(s) 92, 167, 309, 614, 891
AspS9I GGNCC 4 cut(s) 226, 484, 547, 571
AsuC2I CCSGG 1 cut(s) 87
AsuHPI GGTGA 4 cut(s) 46, 112, 259, 923
AvaI CYCGRG 1 cut(s) 830
AvaII GGWCC 4 cut(s) 226, 484, 547, 571
BamHI GGATCC 1 cut(s) 155
BanI GGYRCC 4 cut(s) 89, 164, 306, 888
BanII GRGCYC 1 cut(s) 935
BbsI GAAGAC 2 cut(s) 484, 818
Bbv12I GWGCWC 1 cut(s) 935
BbvCI CCTCAGC 1 cut(s) 770
BbvI GCAGC 1 cut(s) 681
BccI CCATC 5 cut(s) 188, 343, 461, 638, 706
BceAI ACGGC 4 cut(s) 88, 178, 294, 646
BciT130I CCWGG 1 cut(s) 63
BclI TGATCA 3 cut(s) 36, 372, 417
BcnI CCSGG 1 cut(s) 87
BcoDI GTCTC 2 cut(s) 466, 722
BfoI RGCGCY 5 cut(s) 93, 168, 310, 615, 892
BfuAI ACCTGC 1 cut(s) 582
BglII AGATCT 1 cut(s) 489
BisI GCNGC 3 cut(s) 83, 695, 882
BlpI GCTNAGC 1 cut(s) 411
BlsI GCNGC 3 cut(s) 84, 696, 883
Bme1390I CCNGG 2 cut(s) 63, 87
Bme18I GGWCC 4 cut(s) 226, 484, 547, 571
BmeT110I CYCGRG 1 cut(s) 830
BmgBI CACGTC 2 cut(s) 316, 556
BmgT120I GGNCC 4 cut(s) 226, 484, 547, 571
BmiI GGNNCC 7 cut(s) 91, 157, 166, 274, 308, 485, 890
BmrFI CCNGG 2 cut(s) 63, 87
BmsI GCATC 2 cut(s) 131, 696
BpiI GAAGAC 2 cut(s) 484, 818
Bpu10I CCTNAGC 1 cut(s) 770
Bpu1102I GCTNAGC 1 cut(s) 411
BpuEI CTTGAG 2 cut(s) 170, 949
BpuMI CCSGG 1 cut(s) 87
BsaBI GATNNNNATC 2 cut(s) 35, 435
BsaHI GRCGYC 5 cut(s) 6, 90, 165, 307, 889
BsaI GGTCTC 1 cut(s) 466
BsaJI CCNNGG 4 cut(s) 61, 193, 222, 235
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 446, 476
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 223, 316
Bse118I RCCGGY 5 cut(s) 131, 167, 240, 269, 908
Bse8I GATNNNNATC 2 cut(s) 35, 435
BseBI CCWGG 1 cut(s) 63
BseDI CCNNGG 4 cut(s) 61, 193, 222, 235
BseGI GGATG 2 cut(s) 180, 358
BseJI GATNNNNATC 2 cut(s) 35, 435
BseLI CCNNNNNNNGG 3 cut(s) 86, 223, 316
BseMII CTCAG 4 cut(s) 354, 402, 520, 761
BseRI GAGGAG 3 cut(s) 137, 617, 803
BseX3I CGGCCG 1 cut(s) 238
BseXI GCAGC 1 cut(s) 681
BseYI CCCAGC 3 cut(s) 326, 386, 884
Bsh1236I CGCG 1 cut(s) 629
Bsh1285I CGRYCG 3 cut(s) 33, 241, 245
BshFI GGCC 3 cut(s) 75, 240, 661
BshNI GGYRCC 4 cut(s) 89, 164, 306, 888
BsiEI CGRYCG 3 cut(s) 33, 241, 245
BsiHKAI GWGCWC 1 cut(s) 935
BsiHKCI CYCGRG 1 cut(s) 830
BsiSI CCGG 7 cut(s) 87, 132, 168, 241, 270, 276, 909
BslI CCNNNNNNNGG 3 cut(s) 86, 223, 316
BsmAI GTCTC 2 cut(s) 466, 722
BsmBI CGTCTC 1 cut(s) 722
BsnI GGCC 3 cut(s) 75, 240, 661
Bso31I GGTCTC 1 cut(s) 466
BsoBI CYCGRG 1 cut(s) 830
Bsp1286I GDGCHC 1 cut(s) 935
Bsp1720I GCTNAGC 1 cut(s) 411
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 8 cut(s) 43, 80, 83, 261, 297, 448, 569, 881
BspANI GGCC 3 cut(s) 75, 240, 661
BspCNI CTCAG 4 cut(s) 355, 403, 519, 762
BspFNI CGCG 1 cut(s) 629
BspHI TCATGA 1 cut(s) 747
BspLI GGNNCC 7 cut(s) 91, 157, 166, 274, 308, 485, 890
BspMI ACCTGC 1 cut(s) 582
BspPI GGATC 4 cut(s) 17, 150, 163, 184
BspQI GCTCTTC 1 cut(s) 400
BspT107I GGYRCC 4 cut(s) 89, 164, 306, 888
BspTNI GGTCTC 1 cut(s) 466
BsrBI CCGCTC 1 cut(s) 263
BsrFI RCCGGY 5 cut(s) 131, 167, 240, 269, 908
BssAI RCCGGY 5 cut(s) 131, 167, 240, 269, 908
BssECI CCNNGG 4 cut(s) 61, 193, 222, 235
BssNI GRCGYC 5 cut(s) 6, 90, 165, 307, 889
BssT1I CCWWGG 1 cut(s) 222
Bst2UI CCWGG 1 cut(s) 63
Bst4CI ACNGT 4 cut(s) 380, 544, 757, 904
Bst6I CTCTTC 1 cut(s) 400
BstACI GRCGYC 5 cut(s) 6, 90, 165, 307, 889
BstC8I GCNNGC 4 cut(s) 133, 137, 169, 561
BstDEI CTNAG 5 cut(s) 363, 411, 506, 770, 947
BstDSI CCRYGG 1 cut(s) 222
BstF5I GGATG 2 cut(s) 180, 358
BstFNI CGCG 1 cut(s) 629
BstH2I RGCGCY 5 cut(s) 93, 168, 310, 615, 892
BstHHI GCGC 5 cut(s) 92, 167, 309, 614, 891
BstMAI GTCTC 2 cut(s) 466, 722
BstMCI CGRYCG 3 cut(s) 33, 241, 245
BstMWI GCNNNNNNNGC 1 cut(s) 141
BstNI CCWGG 1 cut(s) 63
BstSCI CCNGG 2 cut(s) 61, 85
BstUI CGCG 1 cut(s) 629
BstV1I GCAGC 1 cut(s) 681
BstV2I GAAGAC 2 cut(s) 484, 818
BstX2I RGATCY 3 cut(s) 155, 189, 489
BstYI RGATCY 3 cut(s) 155, 189, 489
BstZI CGGCCG 1 cut(s) 238
BsuRI GGCC 3 cut(s) 75, 240, 661
BtgI CCRYGG 1 cut(s) 222
BtgZI GCGATG 1 cut(s) 154
BtrI CACGTC 2 cut(s) 316, 556
BtsCI GGATG 2 cut(s) 180, 358
BveI ACCTGC 1 cut(s) 582
Cac8I GCNNGC 4 cut(s) 133, 137, 169, 561
CciI TCATGA 1 cut(s) 747
CfoI GCGC 5 cut(s) 92, 167, 309, 614, 891
Cfr10I RCCGGY 5 cut(s) 131, 167, 240, 269, 908
Cfr13I GGNCC 4 cut(s) 226, 484, 547, 571
CseI GACGC 1 cut(s) 640
Csp6I GTAC 1 cut(s) 733
CviAII CATG 4 cut(s) 208, 223, 444, 748
CviQI GTAC 1 cut(s) 733
DdeI CTNAG 5 cut(s) 363, 411, 506, 770, 947
DinI GGCGCC 4 cut(s) 91, 166, 308, 890
EaeI YGGCCR 3 cut(s) 73, 238, 659
EagI CGGCCG 1 cut(s) 238
Eam1104I CTCTTC 1 cut(s) 400
EarI CTCTTC 1 cut(s) 400
EciI GGCGGA 1 cut(s) 584
Ecl136II GAGCTC 1 cut(s) 933
EclXI CGGCCG 1 cut(s) 238
Eco130I CCWWGG 1 cut(s) 222
Eco24I GRGCYC 1 cut(s) 935
Eco31I GGTCTC 1 cut(s) 466
Eco47I GGWCC 4 cut(s) 226, 484, 547, 571
Eco52I CGGCCG 1 cut(s) 238
Eco53kI GAGCTC 1 cut(s) 933
Eco88I CYCGRG 1 cut(s) 830
EcoICRI GAGCTC 1 cut(s) 933
EcoRII CCWGG 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 935
EgeI GGCGCC 4 cut(s) 91, 166, 308, 890
EheI GGCGCC 4 cut(s) 91, 166, 308, 890
ErhI CCWWGG 1 cut(s) 222
Esp3I CGTCTC 1 cut(s) 722
FaeI CATG 4 cut(s) 211, 226, 447, 751
FatI CATG 4 cut(s) 207, 222, 443, 747
FauI CCCGC 2 cut(s) 87, 290
FbaI TGATCA 3 cut(s) 36, 372, 417
FblI GTMKAC 1 cut(s) 213
Fnu4HI GCNGC 3 cut(s) 83, 695, 882
FokI GGATG 2 cut(s) 167, 365
FriOI GRGCYC 1 cut(s) 935
Fsp4HI GCNGC 3 cut(s) 83, 695, 882
GlaI GCGC 5 cut(s) 91, 166, 308, 613, 890
GluI GCNGC 3 cut(s) 83, 695, 882
GsaI CCCAGC 3 cut(s) 330, 390, 888
HaeII RGCGCY 5 cut(s) 93, 168, 310, 615, 892
HaeIII GGCC 3 cut(s) 75, 240, 661
HapII CCGG 7 cut(s) 87, 132, 168, 241, 270, 276, 909
HgaI GACGC 1 cut(s) 640
HhaI GCGC 5 cut(s) 92, 167, 309, 614, 891
Hin1I GRCGYC 5 cut(s) 6, 90, 165, 307, 889
Hin1II CATG 4 cut(s) 211, 226, 447, 751
Hin6I GCGC 5 cut(s) 90, 165, 307, 612, 889
HinP1I GCGC 5 cut(s) 90, 165, 307, 612, 889
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HinfI GANTC 2 cut(s) 17, 66
HpaII CCGG 7 cut(s) 87, 132, 168, 241, 270, 276, 909
HphI GGTGA 4 cut(s) 46, 112, 259, 923
Hpy166II GTNNAC 2 cut(s) 214, 547
Hpy188I TCNGA 6 cut(s) 22, 197, 342, 466, 474, 509
Hpy188III TCNNGA 7 cut(s) 34, 187, 487, 586, 748, 830, 928
Hpy8I GTNNAC 2 cut(s) 214, 547
Hpy99I CGWCG 3 cut(s) 110, 338, 634
HpyAV CCTTC 4 cut(s) 586, 769, 795, 808
HpyCH4III ACNGT 4 cut(s) 380, 544, 757, 904
HpyCH4IV ACGT 5 cut(s) 315, 336, 555, 581, 731
HpyCH4V TGCA 2 cut(s) 454, 697
HpyF10VI GCNNNNNNNGC 1 cut(s) 141
HpyF3I CTNAG 5 cut(s) 363, 411, 506, 770, 947
HpySE526I ACGT 5 cut(s) 315, 336, 555, 581, 731
Hsp92I GRCGYC 5 cut(s) 6, 90, 165, 307, 889
Hsp92II CATG 4 cut(s) 211, 226, 447, 751
HspAI GCGC 5 cut(s) 90, 165, 307, 612, 889
KasI GGCGCC 4 cut(s) 89, 164, 306, 888
KroI GCCGGC 2 cut(s) 131, 167
KroNI GCCGGC 2 cut(s) 133, 169
Ksp22I TGATCA 3 cut(s) 36, 372, 417
LguI GCTCTTC 1 cut(s) 400
LmnI GCTCC 2 cut(s) 278, 778
Lsp1109I GCAGC 1 cut(s) 681
LweI GCATC 2 cut(s) 131, 696
MaeII ACGT 5 cut(s) 315, 336, 555, 581, 731
MaeIII GTNAC 3 cut(s) 311, 663, 782
MbiI CCGCTC 1 cut(s) 263
MboII GAAGA 5 cut(s) 417, 489, 601, 818, 926
MfeI CAATTG 1 cut(s) 698
MflI RGATCY 3 cut(s) 155, 189, 489
MhlI GDGCHC 1 cut(s) 935
MluCI AATT 6 cut(s) 50, 368, 655, 698, 846, 864
Mly113I GGCGCC 4 cut(s) 90, 165, 307, 889
MlyI GAGTC 1 cut(s) 11
MmeI TCCRAC 4 cut(s) 50, 133, 183, 408
MreI CGCCGGCG 1 cut(s) 131
MroNI GCCGGC 2 cut(s) 131, 167
MseI TTAA 2 cut(s) 723, 867
MspI CCGG 7 cut(s) 87, 132, 168, 241, 270, 276, 909
MspR9I CCNGG 2 cut(s) 63, 87
MunI CAATTG 1 cut(s) 698
MvaI CCWGG 1 cut(s) 63
MvnI CGCG 1 cut(s) 629
MwoI GCNNNNNNNGC 1 cut(s) 141
NaeI GCCGGC 2 cut(s) 133, 169
NarI GGCGCC 4 cut(s) 90, 165, 307, 889
NciI CCSGG 1 cut(s) 87
NcoI CCATGG 1 cut(s) 222
NgoMIV GCCGGC 2 cut(s) 131, 167
NlaIII CATG 4 cut(s) 211, 226, 447, 751
NlaIV GGNNCC 7 cut(s) 91, 157, 166, 274, 308, 485, 890
NmeAIII GCCGAG 2 cut(s) 216, 273
NmuCI GTSAC 3 cut(s) 311, 663, 782
PagI TCATGA 1 cut(s) 747
PciSI GCTCTTC 1 cut(s) 400
PdiI GCCGGC 2 cut(s) 133, 169
PfeI GAWTC 1 cut(s) 66
PkrI GCNGC 3 cut(s) 84, 696, 883
Ple19I CGATCG 1 cut(s) 33
PleI GAGTC 1 cut(s) 11
PluTI GGCGCC 4 cut(s) 93, 168, 310, 892
PpsI GAGTC 1 cut(s) 11
PshBI ATTAAT 1 cut(s) 867
Psp124BI GAGCTC 1 cut(s) 935
Psp6I CCWGG 1 cut(s) 61
PspFI CCCAGC 3 cut(s) 326, 386, 884
PspGI CCWGG 1 cut(s) 61
PspN4I GGNNCC 7 cut(s) 91, 157, 166, 274, 308, 485, 890
PspPI GGNCC 4 cut(s) 226, 484, 547, 571
PsuI RGATCY 3 cut(s) 155, 189, 489
PvuI CGATCG 1 cut(s) 33
RsaI GTAC 1 cut(s) 734
RsaNI GTAC 1 cut(s) 733
SacI GAGCTC 1 cut(s) 935
SalI GTCGAC 1 cut(s) 212
SapI GCTCTTC 1 cut(s) 400
SaqAI TTAA 2 cut(s) 723, 867
SatI GCNGC 3 cut(s) 83, 695, 882
Sau96I GGNCC 4 cut(s) 226, 484, 547, 571
SchI GAGTC 1 cut(s) 11
ScrFI CCNGG 2 cut(s) 63, 87
SduI GDGCHC 1 cut(s) 935
SfaNI GCATC 2 cut(s) 131, 696
SfoI GGCGCC 4 cut(s) 91, 166, 308, 890
SgrAI CRCCGGYG 1 cut(s) 131
SinI GGWCC 4 cut(s) 226, 484, 547, 571
SmlI CTYRAG 2 cut(s) 185, 928
SmoI CTYRAG 2 cut(s) 185, 928
Sse9I AATT 6 cut(s) 50, 368, 655, 698, 846, 864
SsiI CCGC 8 cut(s) 43, 80, 83, 261, 297, 448, 569, 881
SspDI GGCGCC 4 cut(s) 89, 164, 306, 888
SstI GAGCTC 1 cut(s) 935
StyD4I CCNGG 2 cut(s) 61, 85
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 4 cut(s) 380, 544, 757, 904
TaiI ACGT 5 cut(s) 318, 339, 558, 584, 734
TaqI TCGA 5 cut(s) 105, 213, 333, 531, 704
TasI AATT 6 cut(s) 50, 368, 655, 698, 846, 864
TauI GCSGC 2 cut(s) 85, 884
TfiI GAWTC 1 cut(s) 66
Tru1I TTAA 2 cut(s) 723, 867
Tru9I TTAA 2 cut(s) 723, 867
TseFI GTSAC 3 cut(s) 311, 663, 782
TseI GCWGC 1 cut(s) 694
Tsp45I GTSAC 3 cut(s) 311, 663, 782
TspDTI ATGAA 1 cut(s) 855
TspGWI ACGGA 1 cut(s) 218
VpaK11BI GGWCC 4 cut(s) 226, 484, 547, 571
VspI ATTAAT 1 cut(s) 867
XapI RAATTY 1 cut(s) 50
XmiI GTMKAC 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.