RchiOBHm_Chr7g0234131

ABC transporter I family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001882
Physical Location & Seq
Reverse (-)
58742610 .. 58743230
621 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20982

Sequence Viewer

Length: 573 bp
ATGGACGACTTCTCCCTCACCCTCAACGTCGGCGACCGATGCCTCCTCGTTGGATCCAACGGCGCCGGCAAAACCATGATCCTCAGGATTCTCGGAGGCAAGCACATGGTTGACCCCAGCATGGTCCGGGTTCTGGGTCGCTCGACTTTCCATAACACCGCTCTCATCGGCTTCGGCGATCTGTCGTACCTAGGCAGAGAGTGGCGGCGTGACGTGGCTTTTGCTGGCTTCGACGTTCCGATACAGATGGATGTTTCGGCTGATAAATTGATCAACGGGGTTGCTGGGATTGACCCACAAAGGAGAGCTGAGCTGATCAAGGTGTTGGATATTGATCTTTCATGGAGGTTGCATATTCATCTCGGTTATGTGCTTCTGCTTGATGAGATCACGGTGGACCTTGATGTGCTAGCGAGGGCGGACCTGCTCCAGTTCTTGAGGAAGGAATGTGAGGAGCGAGGTGCTATGATCGTTTCTCAAGCCCCAAATTGGAGAGAGAGAGAGTCTGAGACTCGGATCGGAGGGGGAGAGAGAGAGAGAAGGGTAGTTTTGGAAGATAAATATAGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
ABC_tran

Protein Analysis

190

Amino Acids

21.39

Weight (kDa)

5.46

Isoelectric Point (pI)

35.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 2 - 51 7.9e-07 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 432
AccB1I GGYRCC 1 cut(s) 62
AccBSI CCGCTC 1 cut(s) 161
AciI CCGC 3 cut(s) 159, 205, 419
AclWI GGATC 4 cut(s) 48, 61, 73, 524
AcyI GRCGYC 1 cut(s) 63
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 3 cut(s) 121, 133, 489
AjiI CACGTC 1 cut(s) 214
AluBI AGCT 2 cut(s) 308, 313
AluI AGCT 2 cut(s) 308, 313
Alw26I GTCTC 1 cut(s) 503
AlwI GGATC 4 cut(s) 48, 61, 73, 524
ArsI GACNNNNNNTTYG 2 cut(s) 203, 235
AspA2I CCTAGG 1 cut(s) 190
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 3 cut(s) 124, 397, 421
AsuC2I CCSGG 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 10
AsuNHI GCTAGC 1 cut(s) 409
AvaII GGWCC 3 cut(s) 124, 397, 421
AvrII CCTAGG 1 cut(s) 190
AxyI CCTNAGG 1 cut(s) 83
BamHI GGATCC 1 cut(s) 53
BanI GGYRCC 1 cut(s) 62
BccI CCATC 1 cut(s) 241
BceAI ACGGC 1 cut(s) 76
BclI TGATCA 2 cut(s) 270, 315
BcnI CCSGG 1 cut(s) 128
BcoDI GTCTC 1 cut(s) 503
BfaI CTAG 2 cut(s) 191, 410
BfoI RGCGCY 1 cut(s) 66
BfuAI ACCTGC 1 cut(s) 432
BisI GCNGC 1 cut(s) 206
BlnI CCTAGG 1 cut(s) 190
BlpI GCTNAGC 1 cut(s) 309
BlsI GCNGC 1 cut(s) 207
Bme1390I CCNGG 1 cut(s) 128
Bme18I GGWCC 3 cut(s) 124, 397, 421
BmgBI CACGTC 1 cut(s) 214
BmgT120I GGNCC 3 cut(s) 124, 397, 421
BmiI GGNNCC 2 cut(s) 55, 64
BmrFI CCNGG 1 cut(s) 128
BmsI GCATC 1 cut(s) 29
BmtI GCTAGC 1 cut(s) 413
BpmI CTGGAG 1 cut(s) 413
Bpu1102I GCTNAGC 1 cut(s) 309
BpuEI CTTGAG 2 cut(s) 457, 462
BpuMI CCSGG 1 cut(s) 128
BsaBI GATNNNNATC 1 cut(s) 333
BsaHI GRCGYC 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 190
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 133, 489
Bse118I RCCGGY 1 cut(s) 65
Bse1I ACTGG 1 cut(s) 430
Bse21I CCTNAGG 1 cut(s) 83
Bse8I GATNNNNATC 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 190
BseGI GGATG 1 cut(s) 256
BseJI GATNNNNATC 1 cut(s) 333
BseLI CCNNNNNNNGG 3 cut(s) 121, 133, 489
BseMII CTCAG 3 cut(s) 97, 300, 498
BseNI ACTGG 1 cut(s) 430
BseRI GAGGAG 2 cut(s) 35, 467
BseYI CCCAGC 2 cut(s) 116, 284
Bsh1285I CGRYCG 1 cut(s) 37
BshNI GGYRCC 1 cut(s) 62
BsiEI CGRYCG 1 cut(s) 37
BsiSI CCGG 2 cut(s) 66, 127
BslI CCNNNNNNNGG 3 cut(s) 121, 133, 489
BsmAI GTCTC 1 cut(s) 503
Bsp143I GATC 9 cut(s) 53, 78, 178, 270, 315, 334, 387, 468, 516
Bsp1720I GCTNAGC 1 cut(s) 309
BspACI CCGC 3 cut(s) 159, 205, 419
BspCNI CTCAG 3 cut(s) 96, 301, 499
BspLI GGNNCC 2 cut(s) 55, 64
BspMI ACCTGC 1 cut(s) 432
BspOI GCTAGC 1 cut(s) 413
BspPI GGATC 4 cut(s) 48, 61, 73, 524
BspT107I GGYRCC 1 cut(s) 62
BsrBI CCGCTC 1 cut(s) 161
BsrFI RCCGGY 1 cut(s) 65
BsrI ACTGG 1 cut(s) 430
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 1 cut(s) 190
BssMI GATC 9 cut(s) 53, 78, 178, 270, 315, 334, 387, 468, 516
BssNI GRCGYC 1 cut(s) 63
BssT1I CCWWGG 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 394
BstACI GRCGYC 1 cut(s) 63
BstC8I GCNNGC 4 cut(s) 67, 101, 226, 411
BstDEI CTNAG 3 cut(s) 83, 309, 507
BstF5I GGATG 1 cut(s) 256
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 9 cut(s) 56, 81, 181, 273, 318, 337, 390, 471, 519
BstMAI GTCTC 1 cut(s) 503
BstMBI GATC 9 cut(s) 53, 78, 178, 270, 315, 334, 387, 468, 516
BstMCI CGRYCG 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 126
BstX2I RGATCY 1 cut(s) 53
BstYI RGATCY 1 cut(s) 53
Bsu36I CCTNAGG 1 cut(s) 83
BtrI CACGTC 1 cut(s) 214
BtsCI GGATG 1 cut(s) 256
BveI ACCTGC 1 cut(s) 432
Cac8I GCNNGC 4 cut(s) 67, 101, 226, 411
CfoI GCGC 1 cut(s) 65
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 3 cut(s) 124, 397, 421
Csp6I GTAC 1 cut(s) 187
CviAII CATG 4 cut(s) 76, 106, 121, 342
CviJI RGCY 7 cut(s) 171, 218, 228, 260, 308, 313, 482
CviKI_1 RGCY 7 cut(s) 171, 218, 228, 260, 308, 313, 482
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 3 cut(s) 83, 309, 507
DinI GGCGCC 1 cut(s) 64
DpnI GATC 9 cut(s) 55, 80, 180, 272, 317, 336, 389, 470, 518
DpnII GATC 9 cut(s) 53, 78, 178, 270, 315, 334, 387, 468, 516
EciI GGCGGA 1 cut(s) 434
Eco130I CCWWGG 1 cut(s) 190
Eco47I GGWCC 3 cut(s) 124, 397, 421
Eco81I CCTNAGG 1 cut(s) 83
EcoT14I CCWWGG 1 cut(s) 190
EgeI GGCGCC 1 cut(s) 64
EheI GGCGCC 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 190
FaeI CATG 4 cut(s) 79, 109, 124, 345
FaiI YATR 9 cut(s) 77, 107, 122, 153, 343, 354, 369, 467, 564
FatI CATG 4 cut(s) 75, 105, 120, 341
FbaI TGATCA 2 cut(s) 270, 315
Fnu4HI GCNGC 1 cut(s) 206
FokI GGATG 1 cut(s) 263
Fsp4HI GCNGC 1 cut(s) 206
FspBI CTAG 2 cut(s) 191, 410
GlaI GCGC 1 cut(s) 64
GluI GCNGC 1 cut(s) 206
GsaI CCCAGC 2 cut(s) 120, 288
GsuI CTGGAG 1 cut(s) 413
HaeII RGCGCY 1 cut(s) 66
HapII CCGG 2 cut(s) 66, 127
HhaI GCGC 1 cut(s) 65
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 4 cut(s) 79, 109, 124, 345
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 3 cut(s) 88, 503, 511
HpaII CCGG 2 cut(s) 66, 127
HphI GGTGA 1 cut(s) 10
Hpy166II GTNNAC 2 cut(s) 112, 397
Hpy188I TCNGA 5 cut(s) 95, 240, 508, 516, 521
Hpy188III TCNNGA 2 cut(s) 85, 436
Hpy8I GTNNAC 2 cut(s) 112, 397
Hpy99I CGWCG 2 cut(s) 32, 236
HpyAV CCTTC 2 cut(s) 436, 534
HpyCH4III ACNGT 1 cut(s) 394
HpyCH4IV ACGT 3 cut(s) 27, 213, 234
HpyCH4V TGCA 1 cut(s) 352
HpyF10VI GCNNNNNNNGC 1 cut(s) 39
HpyF3I CTNAG 3 cut(s) 83, 309, 507
HpySE526I ACGT 3 cut(s) 27, 213, 234
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 4 cut(s) 79, 109, 124, 345
HspAI GCGC 1 cut(s) 63
KasI GGCGCC 1 cut(s) 62
KroI GCCGGC 1 cut(s) 65
KroNI GCCGGC 1 cut(s) 67
Ksp22I TGATCA 2 cut(s) 270, 315
Kzo9I GATC 9 cut(s) 53, 78, 178, 270, 315, 334, 387, 468, 516
LmnI GCTCC 2 cut(s) 432, 454
LpnPI CCDG 9 cut(s) 70, 79, 119, 130, 140, 210, 270, 437, 443
LweI GCATC 1 cut(s) 29
MaeI CTAG 2 cut(s) 191, 410
MaeII ACGT 3 cut(s) 27, 213, 234
MaeIII GTNAC 1 cut(s) 209
MalI GATC 9 cut(s) 55, 80, 180, 272, 317, 336, 389, 470, 518
MbiI CCGCTC 1 cut(s) 161
MboI GATC 9 cut(s) 53, 78, 178, 270, 315, 334, 387, 468, 516
MboII GAAGA 1 cut(s) 566
MflI RGATCY 1 cut(s) 53
MluCI AATT 2 cut(s) 266, 487
Mly113I GGCGCC 1 cut(s) 63
MlyI GAGTC 2 cut(s) 505, 512
MmeI TCCRAC 3 cut(s) 31, 81, 306
MroNI GCCGGC 1 cut(s) 65
MspI CCGG 2 cut(s) 66, 127
MspR9I CCNGG 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 39
NaeI GCCGGC 1 cut(s) 67
NarI GGCGCC 1 cut(s) 63
NciI CCSGG 1 cut(s) 128
NdeII GATC 9 cut(s) 53, 78, 178, 270, 315, 334, 387, 468, 516
NgoMIV GCCGGC 1 cut(s) 65
NheI GCTAGC 1 cut(s) 409
NlaIII CATG 4 cut(s) 79, 109, 124, 345
NlaIV GGNNCC 2 cut(s) 55, 64
NmuCI GTSAC 1 cut(s) 209
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PdiI GCCGGC 1 cut(s) 67
PfeI GAWTC 1 cut(s) 88
PkrI GCNGC 1 cut(s) 207
PleI GAGTC 2 cut(s) 505, 511
PluTI GGCGCC 1 cut(s) 66
PpsI GAGTC 2 cut(s) 505, 511
PspFI CCCAGC 2 cut(s) 116, 284
PspN4I GGNNCC 2 cut(s) 55, 64
PspPI GGNCC 3 cut(s) 124, 397, 421
PsuI RGATCY 1 cut(s) 53
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SatI GCNGC 1 cut(s) 206
Sau3AI GATC 9 cut(s) 53, 78, 178, 270, 315, 334, 387, 468, 516
Sau96I GGNCC 3 cut(s) 124, 397, 421
SchI GAGTC 2 cut(s) 505, 512
ScrFI CCNGG 1 cut(s) 128
SfaNI GCATC 1 cut(s) 29
SfoI GGCGCC 1 cut(s) 64
SinI GGWCC 3 cut(s) 124, 397, 421
SmlI CTYRAG 2 cut(s) 436, 477
SmoI CTYRAG 2 cut(s) 436, 477
Sse9I AATT 2 cut(s) 266, 487
SsiI CCGC 3 cut(s) 159, 205, 419
SspDI GGCGCC 1 cut(s) 62
SspMI CTAG 2 cut(s) 191, 410
StyD4I CCNGG 1 cut(s) 126
StyI CCWWGG 1 cut(s) 190
TaaI ACNGT 1 cut(s) 394
TaiI ACGT 3 cut(s) 30, 216, 237
TaqI TCGA 2 cut(s) 143, 231
TaqII GACCGA 1 cut(s) 51
TasI AATT 2 cut(s) 266, 487
TauI GCSGC 1 cut(s) 208
TfiI GAWTC 1 cut(s) 88
TseFI GTSAC 1 cut(s) 209
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 2 cut(s) 330, 347
VpaK11BI GGWCC 3 cut(s) 124, 397, 421
XmaJI CCTAGG 1 cut(s) 190
XspI CTAG 2 cut(s) 191, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.