Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001882

Physical Location & Seq

Genomic Coordinates Forward (+)

37950767 .. 37954751

Gene Structure 3985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0320000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGAACTTGAACAAATCCAAGCTTCAGGAGATGTGCCAAGCCAGAGGTTGGACCTTCCCCAAGTACAGCAGCAACCAGCAAGGCCCACCTCACCGACCTCGCTTCTCAGCCTCTGTGCTCGTCCATGGCTTCACCTTCAACACTAAAACTATGCTGACCTCTAAGAAAGAAGCCGAGTGCTGTGCTGCTGGGTTGGCCTTGGATTACTTCGATAAAAACCCACAACCACCCCAGCCCAAACGGCCCAAGTGTTTCTCTTTCCTGGCTCAGCCTTCTCATATACCTTCACTTCCTCCACCTTCATCACCAGGTTTGCCGTATCTCACATACAAGGAGAAAGAGATATGGAATGAGACAACTAGTACAGAGGGAAAGAAGGACACTTACGAACTGGAGCTAATGTTGGCAGAAGAGAGAAAGCTATGGCAGAGAGAAAAGCACCAGCTTCAACTAAAGAACTTTGAATTGGAGAATCAGATTGATATGAAGAAGAATGAGCTGGAGCACTGCCGCAAGAAGCTGCAGCATTTGGAGTGGATATTAGAACAAGCTTTACATCTCACACCTGAGATTTTTGAAAAGCTTTTAATGGTTATTTGGGGCCTGTGGAAAAATAGAAATAACAAGCTATGGGAGGACATAGTTCAATTTGCCATTTATATTTTCTTAAGCCGCATGACATGGCTTGAGGAATTTCAAAAAGCCAGAATGGCAGGTTCAACTTCTAACAAAGCTGATGTGCACCAGTGGAAGCTTGCTCTAAATGGTTTCAAGCTAAATGTAGATGGAGTCTTTCTAATGCAAGTACCAAAGCGAGGACTAGGAGTTCTTCGTAACCAAAATGGCAAGGTGCTTGTTGCATTTGCTCAACCTGTACAACATGTGACCTCGACATCACAGCAACTTCATATCTCTGGAGCTACTATTGAATCTGACTGTAATCAGGCTGTGCTAGACATCAAGAATACTTCAATGGCATTGTATGAGTTTGGTAACCTTTTGGATGATATTCATCAATCCAAGCAAGCTTTGCACAATGTAACAATTAGCTTCGCTCCTTGTACCTGTAACAAAGTGGCACATAGACTTGCCAGTATAGGCTTTGATTTTGTTCAAAGGGAGTGCTGGCCACATTGCACTCCCAGTTGTATTCTTGACATTGTTCGGAATGAGTATTCTTCTGCTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

396

Amino Acids

45.61

Weight (kDa)

8.83

Isoelectric Point (pI)

43.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dsrm	PF00035	5 - 68	2.8e-11	Double-stranded RNA binding motif
RVT_3	PF13456	301 - 365	3.2e-06	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02270 AT5G02270
fragaria_vesca	FvH4_6g08040
malus_domestica	MD03G1234700.v1.1 MD04G1190800.v1.1 MD12G1203100.v1.1
prunus_persica	Prupe.6G308800_v2.0.a1
pyrus_communis	pycom12g18950
rosa_chinensis	RchiOBHm_Chr2g0097941 RchiOBHm_Chr3g0457711 RchiOBHm_Chr5g0083331 RchiOBHm_Chr7g0234131
rosa_laevigata	RLG00000019926 RLG00000025192
rosa_multiflora	Rmu_sc0000566.1_g000046 Rmu_sc0001301.1_g000082 Rmu_sc0002068.1_g000007 Rmu_sc0004502.1_g000016 Rmu_sc0005743.1_g000009 Rmu_sc0007131.1_g000011 Rmu_sc0007395.1_g000002 Rmu_sc0028418.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370790 Rroxscaffold_6G00421550 Rroxscaffold_7G00180370
rosa_rugosa	Rorug03G0022700 Rorug05G0320000 Rorug06G0006300 Rorug06G0405000
rosa_samantha	Rh2AG292200 Rh2DG120300 Rh2DG432800 Rh3AG083500 Rh3BG086000 Rh3CG086300 Rh3DG086900 Rh4BG183300 Rh6BG113400 Rh6CG111600 Rh6DG101300 Rh7CG459900 Rh7DG392600 Rh7DG481700
rosa_wichuraiana	Rw3G007150 Rw5G007850 Rw7G033040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	704
AccB7I	CCANNNNNTGG	1 cut(s)	48
AciI	CCGC	2 cut(s)	511, 673
AcoI	YGGCCR	1 cut(s)	1127
AcsI	RAATTY	1 cut(s)	692
AcuI	CTGAAG	1 cut(s)	8
AfaI	GTAC	5 cut(s)	65, 364, 807, 876, 1063
AfiI	CCNNNNNNNGG	2 cut(s)	48, 815
AflII	CTTAAG	1 cut(s)	667
AflIII	ACRYGT	1 cut(s)	880
AhlI	ACTAGT	1 cut(s)	359
AjnI	CCWGG	2 cut(s)	261, 307
AjuI	GAANNNNNNNTTGG	2 cut(s)	449, 481
AloI	GAACNNNNNNTCC	2 cut(s)	810, 842
Alw21I	GWGCWC	3 cut(s)	120, 507, 744
Alw26I	GTCTC	1 cut(s)	347
Alw44I	GTGCAC	1 cut(s)	740
AlwNI	CAGNNNCTG	1 cut(s)	113
AoxI	GGCC	5 cut(s)	82, 195, 242, 601, 1127
ApaLI	GTGCAC	1 cut(s)	740
ApeKI	GCWGC	4 cut(s)	69, 185, 520, 523
ApoI	RAATTY	1 cut(s)	692
AspS9I	GGNCC	4 cut(s)	51, 83, 243, 601
AsuHPI	GGTGA	3 cut(s)	83, 124, 297
AvaII	GGWCC	1 cut(s)	51
BaeGI	GKGCMC	1 cut(s)	744
BalI	TGGCCA	1 cut(s)	1129
BarI	GAAGNNNNNNTAC	2 cut(s)	368, 400
Bbv12I	GWGCWC	3 cut(s)	120, 507, 744
BbvI	GCAGC	4 cut(s)	81, 172, 507, 535
BccI	CCATC	1 cut(s)	779
BceAI	ACGGC	2 cut(s)	257, 301
BcgI	CGANNNNNNTGC	2 cut(s)	164, 198
BciT130I	CCWGG	2 cut(s)	263, 309
BcoDI	GTCTC	1 cut(s)	347
BcuI	ACTAGT	1 cut(s)	359
BfaI	CTAG	3 cut(s)	360, 821, 953
BfmI	CTRYAG	1 cut(s)	521
BfrI	CTTAAG	1 cut(s)	667
BfuAI	ACCTGC	1 cut(s)	704
BglI	GCCNNNNNGGC	2 cut(s)	241, 710
BisI	GCNGC	6 cut(s)	70, 186, 511, 521, 524, 673
BlpI	GCTNAGC	1 cut(s)	267
BlsI	GCNGC	6 cut(s)	71, 187, 512, 522, 525, 674
Bme1390I	CCNGG	2 cut(s)	263, 309
Bme18I	GGWCC	1 cut(s)	51
BmgT120I	GGNCC	4 cut(s)	51, 83, 243, 601
BmiI	GGNNCC	1 cut(s)	602
BmrFI	CCNGG	2 cut(s)	263, 309
BmrI	ACTGGG	1 cut(s)	1137
BmuI	ACTGGG	1 cut(s)	1137
BpmI	CTGGAG	3 cut(s)	413, 521, 936
Bpu1102I	GCTNAGC	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	707
BsaBI	GATNNNNATC	1 cut(s)	1011
BsaJI	CCNNGG	2 cut(s)	124, 198
BsaXI	ACNNNNNCTCC	2 cut(s)	386, 416
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 815
Bse1I	ACTGG	4 cut(s)	396, 745, 1092, 1143
Bse3DI	GCAATG	1 cut(s)	1132
Bse8I	GATNNNNATC	1 cut(s)	1011
BseBI	CCWGG	2 cut(s)	263, 309
BseDI	CCNNGG	2 cut(s)	124, 198
BseGI	GGATG	1 cut(s)	1009
BseJI	GATNNNNATC	1 cut(s)	1011
BseLI	CCNNNNNNNGG	2 cut(s)	48, 815
BseMI	GCAATG	1 cut(s)	1132
BseMII	CTCAG	3 cut(s)	120, 281, 558
BseNI	ACTGG	4 cut(s)	396, 745, 1092, 1143
BseSI	GKGCMC	1 cut(s)	744
BseXI	GCAGC	4 cut(s)	81, 172, 507, 535
BseYI	CCCAGC	2 cut(s)	188, 231
BshFI	GGCC	5 cut(s)	84, 197, 244, 603, 1129
BsiHKAI	GWGCWC	3 cut(s)	120, 507, 744
BslI	CCNNNNNNNGG	2 cut(s)	48, 815
BsmAI	GTCTC	1 cut(s)	347
BsnI	GGCC	5 cut(s)	84, 197, 244, 603, 1129
Bsp1286I	GDGCHC	3 cut(s)	120, 507, 744
Bsp1407I	TGTACA	1 cut(s)	874
Bsp1720I	GCTNAGC	1 cut(s)	267
Bsp19I	CCATGG	1 cut(s)	124
BspACI	CCGC	2 cut(s)	511, 673
BspANI	GGCC	5 cut(s)	84, 197, 244, 603, 1129
BspCNI	CTCAG	3 cut(s)	119, 280, 559
BspLI	GGNNCC	1 cut(s)	602
BspMAI	CTGCAG	1 cut(s)	525
BspMI	ACCTGC	1 cut(s)	704
BspTI	CTTAAG	1 cut(s)	667
BsrDI	GCAATG	1 cut(s)	1132
BsrGI	TGTACA	1 cut(s)	874
BsrI	ACTGG	4 cut(s)	396, 745, 1092, 1143
BssECI	CCNNGG	2 cut(s)	124, 198
BssT1I	CCWWGG	2 cut(s)	124, 198
Bst2UI	CCWGG	2 cut(s)	263, 309
Bst4CI	ACNGT	1 cut(s)	938
Bst6I	CTCTTC	1 cut(s)	405
BstAFI	CTTAAG	1 cut(s)	667
BstAPI	GCANNNNNTGC	1 cut(s)	1030
BstAUI	TGTACA	1 cut(s)	874
BstC8I	GCNNGC	3 cut(s)	756, 1026, 1127
BstDEI	CTNAG	4 cut(s)	106, 162, 267, 567
BstDSI	CCRYGG	1 cut(s)	124
BstEII	GGTNACC	1 cut(s)	992
BstF5I	GGATG	1 cut(s)	1009
BstMAI	GTCTC	1 cut(s)	347
BstMWI	GCNNNNNNNGC	4 cut(s)	194, 241, 710, 1030
BstNI	CCWGG	2 cut(s)	263, 309
BstNSI	RCATGY	1 cut(s)	884
BstPI	GGTNACC	1 cut(s)	992
BstSCI	CCNGG	2 cut(s)	261, 307
BstSFI	CTRYAG	1 cut(s)	521
BstSLI	GKGCMC	1 cut(s)	744
BstV1I	GCAGC	4 cut(s)	81, 172, 507, 535
BsuRI	GGCC	5 cut(s)	84, 197, 244, 603, 1129
BtgI	CCRYGG	1 cut(s)	124
BtsCI	GGATG	1 cut(s)	1009
BtsI	GCAGTG	1 cut(s)	505
BtsIMutI	CAGTG	2 cut(s)	505, 752
BveI	ACCTGC	1 cut(s)	704
Cac8I	GCNNGC	3 cut(s)	756, 1026, 1127
CaiI	CAGNNNCTG	1 cut(s)	113
Cfr13I	GGNCC	4 cut(s)	51, 83, 243, 601
CsiI	ACCWGGT	1 cut(s)	307
Csp6I	GTAC	5 cut(s)	64, 363, 806, 875, 1062
CviAII	CATG	4 cut(s)	125, 676, 681, 881
CviQI	GTAC	5 cut(s)	64, 363, 806, 875, 1062
DdeI	CTNAG	4 cut(s)	106, 162, 267, 567
EaeI	YGGCCR	1 cut(s)	1127
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco130I	CCWWGG	2 cut(s)	124, 198
Eco47I	GGWCC	1 cut(s)	51
Eco57I	CTGAAG	1 cut(s)	8
Eco91I	GGTNACC	1 cut(s)	992
EcoO109I	RGGNCCY	1 cut(s)	601
EcoO65I	GGTNACC	1 cut(s)	992
EcoRII	CCWGG	2 cut(s)	261, 307
EcoT14I	CCWWGG	2 cut(s)	124, 198
ErhI	CCWWGG	2 cut(s)	124, 198
FaeI	CATG	4 cut(s)	128, 679, 684, 884
FatI	CATG	4 cut(s)	124, 675, 680, 880
Fnu4HI	GCNGC	6 cut(s)	70, 186, 511, 521, 524, 673
FokI	GGATG	1 cut(s)	1016
Fsp4HI	GCNGC	6 cut(s)	70, 186, 511, 521, 524, 673
FspBI	CTAG	3 cut(s)	360, 821, 953
GluI	GCNGC	6 cut(s)	70, 186, 511, 521, 524, 673
GsaI	CCCAGC	2 cut(s)	192, 235
GsuI	CTGGAG	3 cut(s)	413, 521, 936
HaeIII	GGCC	5 cut(s)	84, 197, 244, 603, 1129
Hin1II	CATG	4 cut(s)	128, 679, 684, 884
HindIII	AAGCTT	5 cut(s)	20, 549, 581, 752, 1026
HinfI	GANTC	3 cut(s)	472, 789, 929
HphI	GGTGA	3 cut(s)	83, 124, 297
Hpy166II	GTNNAC	1 cut(s)	742
Hpy188I	TCNGA	3 cut(s)	477, 934, 1167
Hpy188III	TCNNGA	4 cut(s)	26, 915, 961, 1154
Hpy8I	GTNNAC	1 cut(s)	742
HpyAV	CCTTC	6 cut(s)	64, 145, 282, 294, 309, 370
HpyCH4III	ACNGT	1 cut(s)	938
HpyCH4V	TGCA	6 cut(s)	523, 742, 802, 860, 1033, 1137
HpyF10VI	GCNNNNNNNGC	4 cut(s)	194, 241, 710, 1030
HpyF3I	CTNAG	4 cut(s)	106, 162, 267, 567
Hsp92II	CATG	4 cut(s)	128, 679, 684, 884
LmnI	GCTCC	4 cut(s)	394, 502, 917, 1060
Lsp1109I	GCAGC	4 cut(s)	81, 172, 507, 535
MabI	ACCWGGT	1 cut(s)	307
MaeI	CTAG	3 cut(s)	360, 821, 953
MaeIII	GTNAC	5 cut(s)	833, 883, 992, 1039, 1067
MboII	GAAGA	5 cut(s)	422, 499, 502, 821, 1170
MhlI	GDGCHC	3 cut(s)	120, 507, 744
MlsI	TGGCCA	1 cut(s)	1129
MluCI	AATT	4 cut(s)	464, 647, 692, 1044
MluNI	TGGCCA	1 cut(s)	1129
MlyI	GAGTC	1 cut(s)	798
MmeI	TCCRAC	1 cut(s)	29
Mox20I	TGGCCA	1 cut(s)	1129
MscI	TGGCCA	1 cut(s)	1129
MseI	TTAA	3 cut(s)	587, 668, 1189
Msp20I	TGGCCA	1 cut(s)	1129
MspCI	CTTAAG	1 cut(s)	667
MspR9I	CCNGG	2 cut(s)	263, 309
MvaI	CCWGG	2 cut(s)	263, 309
MwoI	GCNNNNNNNGC	4 cut(s)	194, 241, 710, 1030
NcoI	CCATGG	1 cut(s)	124
NlaIII	CATG	4 cut(s)	128, 679, 684, 884
NlaIV	GGNNCC	1 cut(s)	602
NmeAIII	GCCGAG	1 cut(s)	199
NmuCI	GTSAC	1 cut(s)	883
NspI	RCATGY	1 cut(s)	884
PciI	ACATGT	1 cut(s)	880
PfeI	GAWTC	2 cut(s)	472, 929
PflMI	CCANNNNNTGG	1 cut(s)	48
PkrI	GCNGC	6 cut(s)	71, 187, 512, 522, 525, 674
PleI	GAGTC	1 cut(s)	797
PpsI	GAGTC	1 cut(s)	797
PscI	ACATGT	1 cut(s)	880
Psp6I	CCWGG	2 cut(s)	261, 307
PspEI	GGTNACC	1 cut(s)	992
PspFI	CCCAGC	2 cut(s)	188, 231
PspGI	CCWGG	2 cut(s)	261, 307
PspN4I	GGNNCC	1 cut(s)	602
PspPI	GGNCC	4 cut(s)	51, 83, 243, 601
PsrI	GAACNNNNNNTAC	2 cut(s)	537, 569
PstI	CTGCAG	1 cut(s)	525
PstNI	CAGNNNCTG	1 cut(s)	113
RsaI	GTAC	5 cut(s)	65, 364, 807, 876, 1063
RsaNI	GTAC	5 cut(s)	64, 363, 806, 875, 1062
SaqAI	TTAA	3 cut(s)	587, 668, 1189
SatI	GCNGC	6 cut(s)	70, 186, 511, 521, 524, 673
Sau96I	GGNCC	4 cut(s)	51, 83, 243, 601
SchI	GAGTC	1 cut(s)	798
ScrFI	CCNGG	2 cut(s)	263, 309
SduI	GDGCHC	3 cut(s)	120, 507, 744
SexAI	ACCWGGT	1 cut(s)	307
SfcI	CTRYAG	1 cut(s)	521
SinI	GGWCC	1 cut(s)	51
SmlI	CTYRAG	2 cut(s)	667, 686
SmoI	CTYRAG	2 cut(s)	667, 686
SpeI	ACTAGT	1 cut(s)	359
Sse9I	AATT	4 cut(s)	464, 647, 692, 1044
SsiI	CCGC	2 cut(s)	511, 673
SspMI	CTAG	3 cut(s)	360, 821, 953
StyD4I	CCNGG	2 cut(s)	261, 307
StyI	CCWWGG	2 cut(s)	124, 198
TaaI	ACNGT	1 cut(s)	938
TaqI	TCGA	2 cut(s)	210, 890
TasI	AATT	4 cut(s)	464, 647, 692, 1044
TatI	WGTACW	3 cut(s)	63, 362, 874
TauI	GCSGC	2 cut(s)	513, 675
TfiI	GAWTC	2 cut(s)	472, 929
Tru1I	TTAA	3 cut(s)	587, 668, 1189
Tru9I	TTAA	3 cut(s)	587, 668, 1189
TscAI	CASTG	2 cut(s)	512, 752
TseFI	GTSAC	1 cut(s)	883
TseI	GCWGC	4 cut(s)	69, 185, 520, 523
Tsp45I	GTSAC	1 cut(s)	883
TspDTI	ATGAA	5 cut(s)	17, 291, 500, 896, 1001
TspRI	CASTG	2 cut(s)	512, 752
Van91I	CCANNNNNTGG	1 cut(s)	48
Vha464I	CTTAAG	1 cut(s)	667
VneI	GTGCAC	1 cut(s)	740
VpaK11BI	GGWCC	1 cut(s)	51
XapI	RAATTY	1 cut(s)	692
XceI	RCATGY	1 cut(s)	884
XspI	CTAG	3 cut(s)	360, 821, 953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.