Rh7CG459900

ABC transporter I family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001882
Physical Location & Seq
Reverse (-)
60880759 .. 60882456
1698 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG459900.1

Sequence Viewer

Length: 609 bp
ATGGACGACTTCTCCCTCACCCTCAACGTCGGCGACCGATGCCTCCTCGTTGGATCCAACGGCGCCGGCAAAACCATGATCCTCAGGATTCTCGGAGGCAAGCACATGGTTGACCCCAGCATGGTCCGGGTTCTGGGTCGCTCGACTTTCCATAACACCGCTCTCATCGGCTTCGGCGATCTGTCGTACCTAGGCAGAGAGTGGCGGCGTGACGTGGCTTTTGCTGGCTTCGACGTTCCGATACAGATGGATGTTTCGGCTGATAAATTGATCAACGGGGTTGCTGGGATTGACCCACAAAGGAGAGCTGAGCTGATCAAGGTGCTTCTGCTTGATGAGATCACGGTGGACCTTGATGTGCTAGCGAGGGCGGACCTGCTCCAGTTCTTGAGGAAGGAATGTGAGGAGCGAGCAGTCCCCCAAGAGCAGCAAGCCCAGCAACATCCGGTTCGGCCACCAGCTCGTCCAGACCCGCTCTGTCCAGATCGGGGACCGCAAGCCCACACCAGCTCCGTCCATATCAGCAACAACCCATCTGCACAGCCCCCGCTGCAAAGCAAGCACAACCCACCTGCAAAGCATCAGCCACCCCCTGCGCACACCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
ABC_tran

Protein Analysis

202

Amino Acids

22.18

Weight (kDa)

6.7

Isoelectric Point (pI)

49.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 2 - 51 1e-06 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 580
Acc16I TGCGCA 1 cut(s) 597
Acc36I ACCTGC 2 cut(s) 384, 580
AccB1I GGYRCC 1 cut(s) 62
AccBSI CCGCTC 2 cut(s) 161, 475
AciI CCGC 6 cut(s) 159, 205, 371, 473, 494, 548
AclWI GGATC 3 cut(s) 48, 61, 73
AcoI YGGCCR 1 cut(s) 452
AcyI GRCGYC 1 cut(s) 63
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 3 cut(s) 121, 133, 488
AjiI CACGTC 1 cut(s) 214
AluBI AGCT 4 cut(s) 308, 313, 461, 510
AluI AGCT 4 cut(s) 308, 313, 461, 510
AlwI GGATC 3 cut(s) 48, 61, 73
AoxI GGCC 1 cut(s) 452
ApeKI GCWGC 2 cut(s) 427, 550
ArsI GACNNNNNNTTYG 2 cut(s) 203, 235
AspA2I CCTAGG 1 cut(s) 190
AspLEI GCGC 2 cut(s) 65, 598
AspS9I GGNCC 4 cut(s) 124, 349, 373, 491
AsuC2I CCSGG 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 10
AsuNHI GCTAGC 1 cut(s) 361
AvaII GGWCC 4 cut(s) 124, 349, 373, 491
AvrII CCTAGG 1 cut(s) 190
AxyI CCTNAGG 1 cut(s) 83
BamHI GGATCC 1 cut(s) 53
BanI GGYRCC 1 cut(s) 62
BbvI GCAGC 2 cut(s) 439, 537
BccI CCATC 2 cut(s) 241, 541
BceAI ACGGC 1 cut(s) 76
BclI TGATCA 2 cut(s) 270, 315
BcnI CCSGG 1 cut(s) 128
BfaI CTAG 2 cut(s) 191, 362
BfoI RGCGCY 1 cut(s) 66
BfuAI ACCTGC 2 cut(s) 384, 580
BisI GCNGC 3 cut(s) 206, 428, 551
BlnI CCTAGG 1 cut(s) 190
BlpI GCTNAGC 1 cut(s) 309
BlsI GCNGC 3 cut(s) 207, 429, 552
Bme1390I CCNGG 1 cut(s) 128
Bme18I GGWCC 4 cut(s) 124, 349, 373, 491
BmgBI CACGTC 1 cut(s) 214
BmgT120I GGNCC 4 cut(s) 124, 349, 373, 491
BmiI GGNNCC 3 cut(s) 55, 64, 492
BmrFI CCNGG 1 cut(s) 128
BmsI GCATC 2 cut(s) 29, 589
BmtI GCTAGC 1 cut(s) 365
BpmI CTGGAG 1 cut(s) 365
Bpu1102I GCTNAGC 1 cut(s) 309
BpuEI CTTGAG 1 cut(s) 409
BpuMI CCSGG 1 cut(s) 128
BsaHI GRCGYC 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 190
BsaWI WCCGGW 1 cut(s) 445
BsaXI ACNNNNNCTCC 3 cut(s) 26, 494, 524
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 133, 488
Bse118I RCCGGY 1 cut(s) 65
Bse1I ACTGG 1 cut(s) 382
Bse21I CCTNAGG 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 190
BseGI GGATG 2 cut(s) 256, 442
BseLI CCNNNNNNNGG 3 cut(s) 121, 133, 488
BseMII CTCAG 2 cut(s) 97, 300
BseNI ACTGG 1 cut(s) 382
BseRI GAGGAG 2 cut(s) 35, 419
BseXI GCAGC 2 cut(s) 439, 537
BseYI CCCAGC 3 cut(s) 116, 284, 435
BsgI GTGCAG 1 cut(s) 522
Bsh1285I CGRYCG 1 cut(s) 37
BshFI GGCC 1 cut(s) 454
BshNI GGYRCC 1 cut(s) 62
BsiEI CGRYCG 1 cut(s) 37
BsiSI CCGG 3 cut(s) 66, 127, 446
BslFI GGGAC 2 cut(s) 401, 504
BslI CCNNNNNNNGG 3 cut(s) 121, 133, 488
BsmFI GGGAC 2 cut(s) 401, 504
BsnI GGCC 1 cut(s) 454
Bsp143I GATC 7 cut(s) 53, 78, 178, 270, 315, 339, 484
Bsp1720I GCTNAGC 1 cut(s) 309
BspACI CCGC 6 cut(s) 159, 205, 371, 473, 494, 548
BspANI GGCC 1 cut(s) 454
BspCNI CTCAG 2 cut(s) 96, 301
BspLI GGNNCC 3 cut(s) 55, 64, 492
BspMI ACCTGC 2 cut(s) 384, 580
BspOI GCTAGC 1 cut(s) 365
BspPI GGATC 3 cut(s) 48, 61, 73
BspT107I GGYRCC 1 cut(s) 62
BsrBI CCGCTC 2 cut(s) 161, 475
BsrFI RCCGGY 1 cut(s) 65
BsrI ACTGG 1 cut(s) 382
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 1 cut(s) 190
BssMI GATC 7 cut(s) 53, 78, 178, 270, 315, 339, 484
BssNI GRCGYC 1 cut(s) 63
BssT1I CCWWGG 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 346
BstACI GRCGYC 1 cut(s) 63
BstC8I GCNNGC 8 cut(s) 67, 101, 226, 363, 411, 432, 498, 560
BstDEI CTNAG 2 cut(s) 83, 309
BstF5I GGATG 2 cut(s) 256, 442
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 2 cut(s) 65, 598
BstKTI GATC 7 cut(s) 56, 81, 181, 273, 318, 342, 487
BstMBI GATC 7 cut(s) 53, 78, 178, 270, 315, 339, 484
BstMCI CGRYCG 1 cut(s) 37
BstMWI GCNNNNNNNGC 4 cut(s) 39, 436, 550, 559
BstSCI CCNGG 1 cut(s) 126
BstV1I GCAGC 2 cut(s) 439, 537
BstX2I RGATCY 1 cut(s) 53
BstYI RGATCY 1 cut(s) 53
Bsu36I CCTNAGG 1 cut(s) 83
BsuRI GGCC 1 cut(s) 454
BtrI CACGTC 1 cut(s) 214
BtsCI GGATG 2 cut(s) 256, 442
BveI ACCTGC 2 cut(s) 384, 580
Cac8I GCNNGC 8 cut(s) 67, 101, 226, 363, 411, 432, 498, 560
CfoI GCGC 2 cut(s) 65, 598
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 4 cut(s) 124, 349, 373, 491
Csp6I GTAC 1 cut(s) 187
CviAII CATG 3 cut(s) 76, 106, 121
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 2 cut(s) 83, 309
DinI GGCGCC 1 cut(s) 64
DpnI GATC 7 cut(s) 55, 80, 180, 272, 317, 341, 486
DpnII GATC 7 cut(s) 53, 78, 178, 270, 315, 339, 484
EaeI YGGCCR 1 cut(s) 452
EciI GGCGGA 1 cut(s) 386
Eco130I CCWWGG 1 cut(s) 190
Eco47I GGWCC 4 cut(s) 124, 349, 373, 491
Eco81I CCTNAGG 1 cut(s) 83
EcoT14I CCWWGG 1 cut(s) 190
EgeI GGCGCC 1 cut(s) 64
EheI GGCGCC 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 190
FaeI CATG 3 cut(s) 79, 109, 124
FaiI YATR 5 cut(s) 77, 107, 122, 153, 519
FaqI GGGAC 2 cut(s) 401, 504
FatI CATG 3 cut(s) 75, 105, 120
FauI CCCGC 2 cut(s) 480, 555
FbaI TGATCA 2 cut(s) 270, 315
Fnu4HI GCNGC 3 cut(s) 206, 428, 551
FokI GGATG 2 cut(s) 263, 429
Fsp4HI GCNGC 3 cut(s) 206, 428, 551
FspBI CTAG 2 cut(s) 191, 362
FspI TGCGCA 1 cut(s) 597
GlaI GCGC 2 cut(s) 64, 597
GluI GCNGC 3 cut(s) 206, 428, 551
GsaI CCCAGC 3 cut(s) 120, 288, 439
GsuI CTGGAG 1 cut(s) 365
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 1 cut(s) 454
HapII CCGG 3 cut(s) 66, 127, 446
HhaI GCGC 2 cut(s) 65, 598
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 3 cut(s) 79, 109, 124
Hin6I GCGC 2 cut(s) 63, 596
HinP1I GCGC 2 cut(s) 63, 596
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 1 cut(s) 88
HpaII CCGG 3 cut(s) 66, 127, 446
HphI GGTGA 1 cut(s) 10
Hpy166II GTNNAC 2 cut(s) 112, 349
Hpy188I TCNGA 2 cut(s) 95, 240
Hpy188III TCNNGA 4 cut(s) 85, 388, 467, 482
Hpy8I GTNNAC 2 cut(s) 112, 349
Hpy99I CGWCG 2 cut(s) 32, 236
HpyAV CCTTC 1 cut(s) 388
HpyCH4III ACNGT 1 cut(s) 346
HpyCH4IV ACGT 3 cut(s) 27, 213, 234
HpyCH4V TGCA 3 cut(s) 539, 553, 575
HpyF10VI GCNNNNNNNGC 4 cut(s) 39, 436, 550, 559
HpyF3I CTNAG 2 cut(s) 83, 309
HpySE526I ACGT 3 cut(s) 27, 213, 234
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 3 cut(s) 79, 109, 124
HspAI GCGC 2 cut(s) 63, 596
KasI GGCGCC 1 cut(s) 62
KroI GCCGGC 1 cut(s) 65
KroNI GCCGGC 1 cut(s) 67
Ksp22I TGATCA 2 cut(s) 270, 315
Kzo9I GATC 7 cut(s) 53, 78, 178, 270, 315, 339, 484
LmnI GCTCC 3 cut(s) 384, 406, 515
Lsp1109I GCAGC 2 cut(s) 439, 537
LweI GCATC 2 cut(s) 29, 589
MaeI CTAG 2 cut(s) 191, 362
MaeII ACGT 3 cut(s) 27, 213, 234
MaeIII GTNAC 1 cut(s) 209
MalI GATC 7 cut(s) 55, 80, 180, 272, 317, 341, 486
MbiI CCGCTC 2 cut(s) 161, 475
MboI GATC 7 cut(s) 53, 78, 178, 270, 315, 339, 484
MflI RGATCY 1 cut(s) 53
MluCI AATT 1 cut(s) 266
Mly113I GGCGCC 1 cut(s) 63
MmeI TCCRAC 2 cut(s) 31, 81
MnlI CCTC 9 cut(s) 26, 32, 53, 56, 89, 92, 360, 384, 397
MroNI GCCGGC 1 cut(s) 65
MspA1I CMGCKG 1 cut(s) 550
MspI CCGG 3 cut(s) 66, 127, 446
MspR9I CCNGG 1 cut(s) 128
MwoI GCNNNNNNNGC 4 cut(s) 39, 436, 550, 559
NaeI GCCGGC 1 cut(s) 67
NarI GGCGCC 1 cut(s) 63
NciI CCSGG 1 cut(s) 128
NdeII GATC 7 cut(s) 53, 78, 178, 270, 315, 339, 484
NgoMIV GCCGGC 1 cut(s) 65
NheI GCTAGC 1 cut(s) 361
NlaIII CATG 3 cut(s) 79, 109, 124
NlaIV GGNNCC 3 cut(s) 55, 64, 492
NmuCI GTSAC 1 cut(s) 209
NsbI TGCGCA 1 cut(s) 597
PaqCI CACCTGC 1 cut(s) 580
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PdiI GCCGGC 1 cut(s) 67
PfeI GAWTC 1 cut(s) 88
PkrI GCNGC 3 cut(s) 207, 429, 552
PluTI GGCGCC 1 cut(s) 66
PspFI CCCAGC 3 cut(s) 116, 284, 435
PspN4I GGNNCC 3 cut(s) 55, 64, 492
PspPI GGNCC 4 cut(s) 124, 349, 373, 491
PsuI RGATCY 1 cut(s) 53
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SatI GCNGC 3 cut(s) 206, 428, 551
Sau3AI GATC 7 cut(s) 53, 78, 178, 270, 315, 339, 484
Sau96I GGNCC 4 cut(s) 124, 349, 373, 491
ScrFI CCNGG 1 cut(s) 128
SfaNI GCATC 2 cut(s) 29, 589
SfoI GGCGCC 1 cut(s) 64
SinI GGWCC 4 cut(s) 124, 349, 373, 491
SmlI CTYRAG 1 cut(s) 388
SmoI CTYRAG 1 cut(s) 388
Sse9I AATT 1 cut(s) 266
SsiI CCGC 6 cut(s) 159, 205, 371, 473, 494, 548
SspDI GGCGCC 1 cut(s) 62
SspMI CTAG 2 cut(s) 191, 362
StyD4I CCNGG 1 cut(s) 126
StyI CCWWGG 1 cut(s) 190
TaaI ACNGT 1 cut(s) 346
TaiI ACGT 3 cut(s) 30, 216, 237
TaqI TCGA 2 cut(s) 143, 231
TaqII GACCGA 1 cut(s) 51
TasI AATT 1 cut(s) 266
TauI GCSGC 1 cut(s) 208
TfiI GAWTC 1 cut(s) 88
TseFI GTSAC 1 cut(s) 209
TseI GCWGC 2 cut(s) 427, 550
Tsp45I GTSAC 1 cut(s) 209
TspGWI ACGGA 1 cut(s) 502
VpaK11BI GGWCC 4 cut(s) 124, 349, 373, 491
XmaJI CCTAGG 1 cut(s) 190
XspI CTAG 2 cut(s) 191, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.