Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001882

Physical Location & Seq

Genomic Coordinates Forward (+)

52449147 .. 52449648

Gene Structure 502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00370790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGTCGGCGACCGATGCCTCCTCGTTGGATCCAACGGCGCCGCAAAACCATGATCCTCGGGATTCTCGGAGGCAAGCACATGGTCGACCCCGCATGGTCCGGTTCGGGTCGCTCGGCTTTCACCGGCTTCGGCGACTGTCGTACCTAGGCGGAGAGTGGCGGCGTGACGTGGCGTTTGCTGGTTTCGACTTTCCAATACGGATGGATGTTTGGGCCGATAAATTGATCAACGGGGTAGCCGGGATTGACCCACAAATGAGAGCCGAGCTGATCAAGGTGTGCTTCGCTGACGAGATCACGGTGGACCTTGATGTGCTAGCGAGGGCGGACCTGCTCCAGTTCTTGAGGAAGGAATGTGAGGAGCGAGGTGCTATGATCGTTTCTCAAGCCCCAAATTGGAGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

135

Amino Acids

15.4

Weight (kDa)

6.84

Isoelectric Point (pI)

38.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02270 AT5G02270
fragaria_vesca	FvH4_6g08040
malus_domestica	MD03G1234700.v1.1 MD04G1190800.v1.1 MD12G1203100.v1.1
prunus_persica	Prupe.6G308800_v2.0.a1
pyrus_communis	pycom12g18950
rosa_chinensis	RchiOBHm_Chr2g0097941 RchiOBHm_Chr3g0457711 RchiOBHm_Chr5g0083331 RchiOBHm_Chr7g0234131
rosa_laevigata	RLG00000019926 RLG00000025192
rosa_multiflora	Rmu_sc0000566.1_g000046 Rmu_sc0001301.1_g000082 Rmu_sc0002068.1_g000007 Rmu_sc0004502.1_g000016 Rmu_sc0005743.1_g000009 Rmu_sc0007131.1_g000011 Rmu_sc0007395.1_g000002 Rmu_sc0028418.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370790 Rroxscaffold_6G00421550 Rroxscaffold_7G00180370
rosa_rugosa	Rorug03G0022700 Rorug05G0320000 Rorug06G0006300 Rorug06G0405000
rosa_samantha	Rh2AG292200 Rh2DG120300 Rh2DG432800 Rh3AG083500 Rh3BG086000 Rh3CG086300 Rh3DG086900 Rh4BG183300 Rh6BG113400 Rh6CG111600 Rh6DG101300 Rh7CG459900 Rh7DG392600 Rh7DG481700
rosa_wichuraiana	Rw3G007150 Rw5G007850 Rw7G033040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	339
AccB1I	GGYRCC	1 cut(s)	37
AccI	GTMKAC	1 cut(s)	85
AciI	CCGC	5 cut(s)	41, 91, 150, 160, 326
AclWI	GGATC	3 cut(s)	23, 36, 47
AcyI	GRCGYC	1 cut(s)	38
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	396
AjiI	CACGTC	1 cut(s)	169
AluBI	AGCT	1 cut(s)	268
AluI	AGCT	1 cut(s)	268
AlwI	GGATC	3 cut(s)	23, 36, 47
Ama87I	CYCGRG	1 cut(s)	57
AoxI	GGCC	1 cut(s)	213
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
AspA2I	CCTAGG	1 cut(s)	145
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	4 cut(s)	97, 213, 304, 328
AsuC2I	CCSGG	1 cut(s)	241
AsuHPI	GGTGA	1 cut(s)	113
AsuNHI	GCTAGC	1 cut(s)	316
AvaI	CYCGRG	1 cut(s)	57
AvaII	GGWCC	3 cut(s)	97, 304, 328
AvrII	CCTAGG	1 cut(s)	145
BaeI	ACNNNNGTAYC	2 cut(s)	125, 158
BamHI	GGATCC	1 cut(s)	28
BanI	GGYRCC	1 cut(s)	37
BccI	CCATC	1 cut(s)	196
BceAI	ACGGC	1 cut(s)	51
BclI	TGATCA	2 cut(s)	225, 270
BcnI	CCSGG	1 cut(s)	241
BfaI	CTAG	2 cut(s)	146, 317
BfoI	RGCGCY	1 cut(s)	41
BfuAI	ACCTGC	1 cut(s)	339
BisI	GCNGC	2 cut(s)	41, 161
BlnI	CCTAGG	1 cut(s)	145
BlsI	GCNGC	2 cut(s)	42, 162
Bme1390I	CCNGG	1 cut(s)	241
Bme18I	GGWCC	3 cut(s)	97, 304, 328
BmeT110I	CYCGRG	1 cut(s)	57
BmgBI	CACGTC	1 cut(s)	169
BmgT120I	GGNCC	4 cut(s)	97, 213, 304, 328
BmiI	GGNNCC	2 cut(s)	30, 39
BmrFI	CCNGG	1 cut(s)	241
BmsI	GCATC	1 cut(s)	4
BmtI	GCTAGC	1 cut(s)	320
BpmI	CTGGAG	1 cut(s)	320
BpuEI	CTTGAG	2 cut(s)	364, 369
BpuMI	CCSGG	1 cut(s)	241
BsaHI	GRCGYC	1 cut(s)	38
BsaJI	CCNNGG	2 cut(s)	56, 145
BsaWI	WCCGGW	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	1 cut(s)	396
Bse118I	RCCGGY	1 cut(s)	123
Bse1I	ACTGG	1 cut(s)	337
BseDI	CCNNGG	2 cut(s)	56, 145
BseGI	GGATG	2 cut(s)	207, 211
BseLI	CCNNNNNNNGG	1 cut(s)	396
BseNI	ACTGG	1 cut(s)	337
BseRI	GAGGAG	2 cut(s)	10, 374
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	1 cut(s)	215
BshNI	GGYRCC	1 cut(s)	37
BsiEI	CGRYCG	1 cut(s)	12
BsiHKCI	CYCGRG	1 cut(s)	57
BsiSI	CCGG	3 cut(s)	100, 124, 240
BslI	CCNNNNNNNGG	1 cut(s)	396
BsnI	GGCC	1 cut(s)	215
BsoBI	CYCGRG	1 cut(s)	57
Bsp143I	GATC	6 cut(s)	28, 52, 225, 270, 294, 375
BspACI	CCGC	5 cut(s)	41, 91, 150, 160, 326
BspANI	GGCC	1 cut(s)	215
BspLI	GGNNCC	2 cut(s)	30, 39
BspMI	ACCTGC	1 cut(s)	339
BspOI	GCTAGC	1 cut(s)	320
BspPI	GGATC	3 cut(s)	23, 36, 47
BspT107I	GGYRCC	1 cut(s)	37
BsrFI	RCCGGY	1 cut(s)	123
BsrI	ACTGG	1 cut(s)	337
BssAI	RCCGGY	1 cut(s)	123
BssECI	CCNNGG	2 cut(s)	56, 145
BssMI	GATC	6 cut(s)	28, 52, 225, 270, 294, 375
BssNI	GRCGYC	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	145
Bst4CI	ACNGT	2 cut(s)	138, 301
BstACI	GRCGYC	1 cut(s)	38
BstC8I	GCNNGC	2 cut(s)	75, 318
BstF5I	GGATG	2 cut(s)	207, 211
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	6 cut(s)	31, 55, 228, 273, 297, 378
BstMBI	GATC	6 cut(s)	28, 52, 225, 270, 294, 375
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstSCI	CCNGG	1 cut(s)	239
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	215
BtrI	CACGTC	1 cut(s)	169
BtsCI	GGATG	2 cut(s)	207, 211
BveI	ACCTGC	1 cut(s)	339
Cac8I	GCNNGC	2 cut(s)	75, 318
CfoI	GCGC	1 cut(s)	40
Cfr10I	RCCGGY	1 cut(s)	123
Cfr13I	GGNCC	4 cut(s)	97, 213, 304, 328
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	3 cut(s)	50, 80, 94
CviJI	RGCY	7 cut(s)	117, 127, 215, 239, 263, 268, 389
CviKI_1	RGCY	7 cut(s)	117, 127, 215, 239, 263, 268, 389
CviQI	GTAC	1 cut(s)	142
DinI	GGCGCC	1 cut(s)	39
DpnI	GATC	6 cut(s)	30, 54, 227, 272, 296, 377
DpnII	GATC	6 cut(s)	28, 52, 225, 270, 294, 375
EciI	GGCGGA	2 cut(s)	165, 341
Eco130I	CCWWGG	1 cut(s)	145
Eco47I	GGWCC	3 cut(s)	97, 304, 328
Eco88I	CYCGRG	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	145
EgeI	GGCGCC	1 cut(s)	39
EheI	GGCGCC	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	145
FaeI	CATG	3 cut(s)	53, 83, 97
FaiI	YATR	4 cut(s)	51, 81, 95, 374
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FatI	CATG	3 cut(s)	49, 79, 93
FauI	CCCGC	1 cut(s)	98
FbaI	TGATCA	2 cut(s)	225, 270
FblI	GTMKAC	1 cut(s)	85
Fnu4HI	GCNGC	2 cut(s)	41, 161
FokI	GGATG	2 cut(s)	214, 218
Fsp4HI	GCNGC	2 cut(s)	41, 161
FspBI	CTAG	2 cut(s)	146, 317
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	2 cut(s)	41, 161
GsuI	CTGGAG	1 cut(s)	320
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	215
HapII	CCGG	3 cut(s)	100, 124, 240
HhaI	GCGC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	3 cut(s)	53, 83, 97
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HincII	GTYRAC	1 cut(s)	86
HindII	GTYRAC	1 cut(s)	86
HinfI	GANTC	1 cut(s)	62
HpaII	CCGG	3 cut(s)	100, 124, 240
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	2 cut(s)	86, 304
Hpy188I	TCNGA	1 cut(s)	69
Hpy188III	TCNNGA	2 cut(s)	59, 343
Hpy8I	GTNNAC	2 cut(s)	86, 304
HpyAV	CCTTC	1 cut(s)	343
HpyCH4III	ACNGT	2 cut(s)	138, 301
HpyCH4IV	ACGT	1 cut(s)	168
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpySE526I	ACGT	1 cut(s)	168
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	3 cut(s)	53, 83, 97
HspAI	GCGC	1 cut(s)	38
KasI	GGCGCC	1 cut(s)	37
Ksp22I	TGATCA	2 cut(s)	225, 270
Kzo9I	GATC	6 cut(s)	28, 52, 225, 270, 294, 375
LmnI	GCTCC	2 cut(s)	339, 361
LpnPI	CCDG	6 cut(s)	113, 137, 165, 253, 344, 350
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	2 cut(s)	146, 317
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	6 cut(s)	30, 54, 227, 272, 296, 377
MboI	GATC	6 cut(s)	28, 52, 225, 270, 294, 375
MflI	RGATCY	1 cut(s)	28
MluCI	AATT	2 cut(s)	221, 394
Mly113I	GGCGCC	1 cut(s)	38
MmeI	TCCRAC	2 cut(s)	6, 56
MnlI	CCTC	8 cut(s)	28, 31, 63, 66, 315, 339, 352, 359
MspI	CCGG	3 cut(s)	100, 124, 240
MspR9I	CCNGG	1 cut(s)	241
MwoI	GCNNNNNNNGC	1 cut(s)	14
NarI	GGCGCC	1 cut(s)	38
NciI	CCSGG	1 cut(s)	241
NdeII	GATC	6 cut(s)	28, 52, 225, 270, 294, 375
NheI	GCTAGC	1 cut(s)	316
NlaIII	CATG	3 cut(s)	53, 83, 97
NlaIV	GGNNCC	2 cut(s)	30, 39
NmeAIII	GCCGAG	2 cut(s)	93, 289
NmuCI	GTSAC	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	62
PkrI	GCNGC	2 cut(s)	42, 162
PluTI	GGCGCC	1 cut(s)	41
PspN4I	GGNNCC	2 cut(s)	30, 39
PspPI	GGNCC	4 cut(s)	97, 213, 304, 328
PsuI	RGATCY	1 cut(s)	28
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SalI	GTCGAC	1 cut(s)	84
SatI	GCNGC	2 cut(s)	41, 161
Sau3AI	GATC	6 cut(s)	28, 52, 225, 270, 294, 375
Sau96I	GGNCC	4 cut(s)	97, 213, 304, 328
ScrFI	CCNGG	1 cut(s)	241
SetI	ASST	7 cut(s)	147, 171, 270, 279, 309, 333, 370
SfaNI	GCATC	1 cut(s)	4
SfoI	GGCGCC	1 cut(s)	39
SinI	GGWCC	3 cut(s)	97, 304, 328
SmlI	CTYRAG	2 cut(s)	343, 384
SmoI	CTYRAG	2 cut(s)	343, 384
Sse9I	AATT	2 cut(s)	221, 394
SsiI	CCGC	5 cut(s)	41, 91, 150, 160, 326
SspDI	GGCGCC	1 cut(s)	37
SspMI	CTAG	2 cut(s)	146, 317
StyD4I	CCNGG	1 cut(s)	239
StyI	CCWWGG	1 cut(s)	145
TaaI	ACNGT	2 cut(s)	138, 301
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	2 cut(s)	85, 186
TaqII	GACCGA	1 cut(s)	26
TasI	AATT	2 cut(s)	221, 394
TauI	GCSGC	2 cut(s)	43, 163
TfiI	GAWTC	1 cut(s)	62
TseFI	GTSAC	1 cut(s)	164
Tsp45I	GTSAC	1 cut(s)	164
TspGWI	ACGGA	1 cut(s)	214
VpaK11BI	GGWCC	3 cut(s)	97, 304, 328
XmaJI	CCTAGG	1 cut(s)	145
XmiI	GTMKAC	1 cut(s)	85
XspI	CTAG	2 cut(s)	146, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.