Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001882

Physical Location & Seq

Genomic Coordinates Reverse (-)

467038 .. 469272

Gene Structure 2235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G02270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCGGTGACGGAGGAGGAGAAGAAGCGGAATTCAACGGTTGAGATCTCCGGATTACGTTTCACGTATCCTGGAATCGACGGTCATCCACCACCGGGATCGAAACCACTTATTGAAGATTTCTCAATCACGCTTAATTCCAGCGATCGGTGTCTCCTCGTCGGATCTAATGGCGCTGGGAAAACGACGATTCTGAAGATATTGGGAGGGAAACACATGGTGGAGCCGCATATGGTTAGGGTTCTGGGTCGCTCGGCGTTTCATGATACTGGATTGACCTCTTCTGGTGATCTCTGTTATCTCGGTGGCGAGTGGAGGCGTGATGTTGCATTTGCAGGATTTGAAGTTCCGATACAAATGGACATTTCGGCGGAGAAGATGATATTTGGAGTGGCTGGTATTGATCCTCAGAGAAGAGATGAGTTGATCAAGGTGTTGGATATCGACATCTCATGGAGACTGCACAAGGTATCCGATGGCCAAAGAAGACGTGTACAGATCTGTATGGGACTCCTGAAGCCATTCAAGGTTCTCCTTTTGGATGAAATAACTGTTGATCTTGACGTTCTCGCTAGAGCAGACCTTTTGAAGTTTCTGAGAAAGGAATGTGAAGAACGAGGAGCAACCATAATCTACGCTACTCATATATTCGATGGCTTAGAGGACTGGCCAACACACATTGTGTATGTAGCAAACGGAAAATTGCAGTTAGCATTGCCAATGGAGAAAGTGAAGGAGACAAGCAAGAAGTCATTGATGAGAACAGTTGAGAGTTGGCTGAGGAAAGAAAGAGATGAAGAGAGAAAGAGAAGGAAAGAGAGGAAAGCTAATGGGCTTCCAGAGTTTGAAACACGGACTGAAGAAAGCCGTGTGACTGGTGATCCAGCACGGATGCTGAACAATGGCTGGGCTGCCGGGAGACTTCACTCTACGGTTGCAGGTGGTGAGGATAATTTCGTCTTAAGCTCAAACAGAGTTCTAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

328

Amino Acids

36.92

Weight (kDa)

8.58

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	39 - 210	2.5e-12	ABC transporter
AAA_21	PF13304	177 - 241	2.1e-07	AAA domain, putative AbiEii toxin, Type IV TA system

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02270 AT5G02270
fragaria_vesca	FvH4_6g08040
malus_domestica	MD03G1234700.v1.1 MD04G1190800.v1.1 MD12G1203100.v1.1
prunus_persica	Prupe.6G308800_v2.0.a1
pyrus_communis	pycom12g18950
rosa_chinensis	RchiOBHm_Chr2g0097941 RchiOBHm_Chr3g0457711 RchiOBHm_Chr5g0083331 RchiOBHm_Chr7g0234131
rosa_laevigata	RLG00000019926 RLG00000025192
rosa_multiflora	Rmu_sc0000566.1_g000046 Rmu_sc0001301.1_g000082 Rmu_sc0002068.1_g000007 Rmu_sc0004502.1_g000016 Rmu_sc0005743.1_g000009 Rmu_sc0007131.1_g000011 Rmu_sc0007395.1_g000002 Rmu_sc0028418.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370790 Rroxscaffold_6G00421550 Rroxscaffold_7G00180370
rosa_rugosa	Rorug03G0022700 Rorug05G0320000 Rorug06G0006300 Rorug06G0405000
rosa_samantha	Rh2AG292200 Rh2DG120300 Rh2DG432800 Rh3AG083500 Rh3BG086000 Rh3CG086300 Rh3DG086900 Rh4BG183300 Rh6BG113400 Rh6CG111600 Rh6DG101300 Rh7CG459900 Rh7DG392600 Rh7DG481700
rosa_wichuraiana	Rw3G007150 Rw5G007850 Rw7G033040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	929
Acc36I	ACCTGC	1 cut(s)	929
AccIII	TCCGGA	1 cut(s)	50
AciI	CCGC	4 cut(s)	5, 28, 227, 371
AclWI	GGATC	4 cut(s)	106, 172, 398, 875
AcoI	YGGCCR	2 cut(s)	478, 668
AcsI	RAATTY	1 cut(s)	31
AcuI	CTGAAG	3 cut(s)	215, 536, 879
AdeI	CACNNNGTG	2 cut(s)	220, 682
AfaI	GTAC	1 cut(s)	495
AfiI	CCNNNNNNNGG	2 cut(s)	95, 147
AflII	CTTAAG	1 cut(s)	961
AflIII	ACRYGT	1 cut(s)	490
AgsI	TTSAA	6 cut(s)	36, 116, 344, 526, 589, 848
AjiI	CACGTC	1 cut(s)	491
AjnI	CCWGG	1 cut(s)	70
AloI	GAACNNNNNNTCC	2 cut(s)	330, 362
AluBI	AGCT	2 cut(s)	827, 966
AluI	AGCT	2 cut(s)	827, 966
Alw26I	GTCTC	4 cut(s)	158, 451, 731, 913
AlwI	GGATC	4 cut(s)	106, 172, 398, 875
Aor13HI	TCCGGA	1 cut(s)	50
AoxI	GGCC	2 cut(s)	478, 668
ApeKI	GCWGC	1 cut(s)	911
ApoI	RAATTY	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	521
AspLEI	GCGC	1 cut(s)	176
AsuC2I	CCSGG	2 cut(s)	96, 916
AsuHPI	GGTGA	4 cut(s)	19, 299, 890, 956
BalI	TGGCCA	2 cut(s)	480, 670
BarI	GAAGNNNNNNTAC	2 cut(s)	336, 368
BbsI	GAAGAC	1 cut(s)	493
BbvCI	CCTCAGC	1 cut(s)	779
BbvI	GCAGC	1 cut(s)	898
BccI	CCATC	2 cut(s)	470, 647
BceAI	ACGGC	1 cut(s)	852
BciT130I	CCWGG	1 cut(s)	72
BciVI	GTATCC	2 cut(s)	78, 481
BclI	TGATCA	1 cut(s)	426
BcnI	CCSGG	2 cut(s)	96, 916
BcoDI	GTCTC	4 cut(s)	158, 451, 731, 913
BfaI	CTAG	1 cut(s)	573
BfoI	RGCGCY	1 cut(s)	177
BfrI	CTTAAG	1 cut(s)	961
BfuAI	ACCTGC	1 cut(s)	929
BfuI	GTATCC	2 cut(s)	78, 481
BglII	AGATCT	2 cut(s)	45, 498
BisI	GCNGC	2 cut(s)	227, 912
BlsI	GCNGC	2 cut(s)	228, 913
Bme1390I	CCNGG	3 cut(s)	72, 96, 916
BmgBI	CACGTC	1 cut(s)	491
BmiI	GGNNCC	1 cut(s)	225
BmrFI	CCNGG	3 cut(s)	72, 96, 916
BmsI	GCATC	1 cut(s)	882
BpiI	GAAGAC	1 cut(s)	493
Bpu10I	CCTNAGC	1 cut(s)	779
BpuMI	CCSGG	2 cut(s)	96, 916
BsaAI	YACGTR	1 cut(s)	66
BsaWI	WCCGGW	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 147
Bse1I	ACTGG	3 cut(s)	274, 671, 880
Bse3DI	GCAATG	1 cut(s)	713
BseAI	TCCGGA	1 cut(s)	50
BseBI	CCWGG	1 cut(s)	72
BseGI	GGATG	3 cut(s)	85, 547, 897
BseLI	CCNNNNNNNGG	2 cut(s)	95, 147
BseMI	GCAATG	1 cut(s)	713
BseMII	CTCAG	3 cut(s)	422, 587, 770
BseNI	ACTGG	3 cut(s)	274, 671, 880
BseRI	GAGGAG	4 cut(s)	29, 32, 146, 633
BseXI	GCAGC	1 cut(s)	898
BseYI	CCCAGC	2 cut(s)	176, 906
BsgI	GTGCAG	1 cut(s)	446
Bsh1285I	CGRYCG	1 cut(s)	148
BshFI	GGCC	2 cut(s)	480, 670
BsiEI	CGRYCG	1 cut(s)	148
BsiSI	CCGG	3 cut(s)	51, 95, 915
BslFI	GGGAC	1 cut(s)	522
BslI	CCNNNNNNNGG	2 cut(s)	95, 147
BsmAI	GTCTC	4 cut(s)	158, 451, 731, 913
BsmFI	GGGAC	1 cut(s)	522
BsnI	GGCC	2 cut(s)	480, 670
Bsp13I	TCCGGA	1 cut(s)	50
Bsp1407I	TGTACA	1 cut(s)	493
BspACI	CCGC	4 cut(s)	5, 28, 227, 371
BspANI	GGCC	2 cut(s)	480, 670
BspCNI	CTCAG	3 cut(s)	421, 588, 771
BspEI	TCCGGA	1 cut(s)	50
BspHI	TCATGA	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	225
BspMI	ACCTGC	1 cut(s)	929
BspPI	GGATC	4 cut(s)	106, 172, 398, 875
BspTI	CTTAAG	1 cut(s)	961
BsrDI	GCAATG	1 cut(s)	713
BsrGI	TGTACA	1 cut(s)	493
BsrI	ACTGG	3 cut(s)	274, 671, 880
Bst2UI	CCWGG	1 cut(s)	72
Bst4CI	ACNGT	5 cut(s)	40, 83, 553, 766, 934
Bst6I	CTCTTC	3 cut(s)	286, 409, 792
BstAFI	CTTAAG	1 cut(s)	961
BstAUI	TGTACA	1 cut(s)	493
BstBAI	YACGTR	1 cut(s)	66
BstDEI	CTNAG	5 cut(s)	408, 596, 658, 779, 980
BstF5I	GGATG	3 cut(s)	85, 547, 897
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	176
BstMAI	GTCTC	4 cut(s)	158, 451, 731, 913
BstMCI	CGRYCG	1 cut(s)	148
BstNI	CCWGG	1 cut(s)	72
BstSCI	CCNGG	3 cut(s)	70, 94, 914
BstV1I	GCAGC	1 cut(s)	898
BstV2I	GAAGAC	1 cut(s)	493
BstX2I	RGATCY	3 cut(s)	45, 164, 498
BstYI	RGATCY	3 cut(s)	45, 164, 498
BsuI	GTATCC	2 cut(s)	78, 481
BsuRI	GGCC	2 cut(s)	480, 670
BtrI	CACGTC	1 cut(s)	491
BtsCI	GGATG	3 cut(s)	85, 547, 897
BveI	ACCTGC	1 cut(s)	929
CciI	TCATGA	1 cut(s)	262
CfoI	GCGC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	494
CviAII	CATG	3 cut(s)	217, 263, 453
CviQI	GTAC	1 cut(s)	494
DdeI	CTNAG	5 cut(s)	408, 596, 658, 779, 980
DraIII	CACNNNGTG	2 cut(s)	220, 682
EaeI	YGGCCR	2 cut(s)	478, 668
Eam1104I	CTCTTC	3 cut(s)	286, 409, 792
EarI	CTCTTC	3 cut(s)	286, 409, 792
EciI	GGCGGA	1 cut(s)	386
Eco32I	GATATC	1 cut(s)	442
Eco57I	CTGAAG	3 cut(s)	215, 536, 879
EcoRI	GAATTC	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	70
EcoRV	GATATC	1 cut(s)	442
FaeI	CATG	3 cut(s)	220, 266, 456
FaqI	GGGAC	1 cut(s)	522
FatI	CATG	3 cut(s)	216, 262, 452
FauNDI	CATATG	1 cut(s)	231
FbaI	TGATCA	1 cut(s)	426
Fnu4HI	GCNGC	2 cut(s)	227, 912
FokI	GGATG	3 cut(s)	72, 554, 904
Fsp4HI	GCNGC	2 cut(s)	227, 912
FspBI	CTAG	1 cut(s)	573
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	2 cut(s)	227, 912
GsaI	CCCAGC	2 cut(s)	180, 910
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	2 cut(s)	480, 670
HapII	CCGG	3 cut(s)	51, 95, 915
HhaI	GCGC	1 cut(s)	176
Hin1II	CATG	3 cut(s)	220, 266, 456
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HinfI	GANTC	3 cut(s)	75, 190, 510
HpaII	CCGG	3 cut(s)	51, 95, 915
HphI	GGTGA	4 cut(s)	19, 299, 890, 956
Hpy166II	GTNNAC	1 cut(s)	494
Hpy188I	TCNGA	6 cut(s)	164, 195, 351, 411, 475, 597
Hpy188III	TCNNGA	5 cut(s)	51, 263, 514, 560, 839
Hpy8I	GTNNAC	1 cut(s)	494
Hpy99I	CGWCG	3 cut(s)	83, 164, 190
HpyAV	CCTTC	2 cut(s)	727, 804
HpyCH4III	ACNGT	5 cut(s)	40, 83, 553, 766, 934
HpyCH4IV	ACGT	4 cut(s)	58, 65, 490, 564
HpyCH4V	TGCA	5 cut(s)	329, 335, 463, 706, 938
HpyF3I	CTNAG	5 cut(s)	408, 596, 658, 779, 980
HpySE526I	ACGT	4 cut(s)	58, 65, 490, 564
Hsp92II	CATG	3 cut(s)	220, 266, 456
HspAI	GCGC	1 cut(s)	174
Kpn2I	TCCGGA	1 cut(s)	50
Ksp22I	TGATCA	1 cut(s)	426
LmnI	GCTCC	2 cut(s)	223, 620
Lsp1109I	GCAGC	1 cut(s)	898
LweI	GCATC	1 cut(s)	882
MaeI	CTAG	1 cut(s)	573
MaeII	ACGT	4 cut(s)	58, 65, 490, 564
MaeIII	GTNAC	2 cut(s)	7, 871
MflI	RGATCY	3 cut(s)	45, 164, 498
MlsI	TGGCCA	2 cut(s)	480, 670
MluCI	AATT	4 cut(s)	31, 136, 701, 952
MluNI	TGGCCA	2 cut(s)	480, 670
MlyI	GAGTC	1 cut(s)	504
MmeI	TCCRAC	2 cut(s)	142, 417
Mox20I	TGGCCA	2 cut(s)	480, 670
MroI	TCCGGA	1 cut(s)	50
MroXI	GAANNNNTTC	1 cut(s)	521
MscI	TGGCCA	2 cut(s)	480, 670
MseI	TTAA	2 cut(s)	135, 962
Msp20I	TGGCCA	2 cut(s)	480, 670
MspCI	CTTAAG	1 cut(s)	961
MspI	CCGG	3 cut(s)	51, 95, 915
MspR9I	CCNGG	3 cut(s)	72, 96, 916
MvaI	CCWGG	1 cut(s)	72
NciI	CCSGG	2 cut(s)	96, 916
NdeI	CATATG	1 cut(s)	231
NlaIII	CATG	3 cut(s)	220, 266, 456
NlaIV	GGNNCC	1 cut(s)	225
NmeAIII	GCCGAG	1 cut(s)	233
NmuCI	GTSAC	2 cut(s)	7, 871
PagI	TCATGA	1 cut(s)	262
PaqCI	CACCTGC	1 cut(s)	929
PdmI	GAANNNNTTC	1 cut(s)	521
PfeI	GAWTC	2 cut(s)	75, 190
PfoI	TCCNGGA	1 cut(s)	70
PkrI	GCNGC	2 cut(s)	228, 913
Ple19I	CGATCG	1 cut(s)	148
PleI	GAGTC	1 cut(s)	504
PpsI	GAGTC	1 cut(s)	504
Ppu21I	YACGTR	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	70
PspFI	CCCAGC	2 cut(s)	176, 906
PspGI	CCWGG	1 cut(s)	70
PspN4I	GGNNCC	1 cut(s)	225
PsuI	RGATCY	3 cut(s)	45, 164, 498
PvuI	CGATCG	1 cut(s)	148
RsaI	GTAC	1 cut(s)	495
RsaNI	GTAC	1 cut(s)	494
SaqAI	TTAA	2 cut(s)	135, 962
SatI	GCNGC	2 cut(s)	227, 912
SchI	GAGTC	1 cut(s)	504
ScrFI	CCNGG	3 cut(s)	72, 96, 916
SfaNI	GCATC	1 cut(s)	882
SmlI	CTYRAG	1 cut(s)	961
SmoI	CTYRAG	1 cut(s)	961
Sse9I	AATT	4 cut(s)	31, 136, 701, 952
SsiI	CCGC	4 cut(s)	5, 28, 227, 371
SspMI	CTAG	1 cut(s)	573
StyD4I	CCNGG	3 cut(s)	70, 94, 914
TaaI	ACNGT	5 cut(s)	40, 83, 553, 766, 934
TaiI	ACGT	4 cut(s)	61, 68, 493, 567
TaqI	TCGA	4 cut(s)	78, 101, 444, 651
TasI	AATT	4 cut(s)	31, 136, 701, 952
TatI	WGTACW	1 cut(s)	493
TauI	GCSGC	1 cut(s)	229
TfiI	GAWTC	2 cut(s)	75, 190
Tru1I	TTAA	2 cut(s)	135, 962
Tru9I	TTAA	2 cut(s)	135, 962
TseFI	GTSAC	2 cut(s)	7, 871
TseI	GCWGC	1 cut(s)	911
Tsp45I	GTSAC	2 cut(s)	7, 871
TspDTI	ATGAA	3 cut(s)	251, 558, 810
TspGWI	ACGGA	4 cut(s)	26, 711, 868, 904
Vha464I	CTTAAG	1 cut(s)	961
XapI	RAATTY	1 cut(s)	31
XmnI	GAANNNNTTC	1 cut(s)	521
XspI	CTAG	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.