Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005743.1

Orthogroup ID

OG0001882

Physical Location & Seq

Genomic Coordinates Reverse (-)

37235 .. 38340

Gene Structure 1106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005743.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

atgcctcaccacccaaactaccctccgatccaaactacccttttctctctctccgcccagcgccaagcctctaatcgacgacttctccctcaccctcaacgtcggcgaccgatgcctactcgttggatccaacggcacctgaaaaaccatgatcctcaggattctcggaggcaagcacatggtcgaccccagcatggtcagggttctgtgtcgctcggctttccacgacaccactctcacggcttcggcgacctgtcgtacctaaacggagagtggcggcgtgacgtggcgtttgctggtttcgacgtttctatacagatggatgtttcggctgataaattgatcaacggggtagctggcattgacccacaaaagagagctgagctgatcaaggtgttggatattgatctttcatggaggttgcataaggtctcagatggtcagagaagaagggtccagatctgtatggatctgctcaaaccatataaggtgcttttgctagatgagatcacggtggaccttaatgtgttagcgagggcggacctgctccagttcttgaggaaggaatcattgccaaagcagccaaatcgtctttcccacccgacaacaccaagtggtgctgctgctgactcaacccgaccgagttcaggttcggaccctgcaagtaaccaagtaactgagctttccaccgcaaaagcatggagacgactcgatcatagccaaagaatgtacttgaatcgaagtagaggtaggagtagcttgagaaacgggagagagaagagtacccatttgggagcttcgttttctatgattgtgggaagaaggcgacggcagagacgatatgggctgtggcgacagcgacacgtgccgcgcttgaggtgctcggaggcagttctggaggggtttgaggccgagaaaacggtgtcgcagggaagacacttatcgtctctgtcgaggtggttgaaagccgctcgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

325

Amino Acids

37.27

Weight (kDa)

11.39

Isoelectric Point (pI)

61.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02270 AT5G02270
fragaria_vesca	FvH4_6g08040
malus_domestica	MD03G1234700.v1.1 MD04G1190800.v1.1 MD12G1203100.v1.1
prunus_persica	Prupe.6G308800_v2.0.a1
pyrus_communis	pycom12g18950
rosa_chinensis	RchiOBHm_Chr2g0097941 RchiOBHm_Chr3g0457711 RchiOBHm_Chr5g0083331 RchiOBHm_Chr7g0234131
rosa_laevigata	RLG00000019926 RLG00000025192
rosa_multiflora	Rmu_sc0000566.1_g000046 Rmu_sc0001301.1_g000082 Rmu_sc0002068.1_g000007 Rmu_sc0004502.1_g000016 Rmu_sc0005743.1_g000009 Rmu_sc0007131.1_g000011 Rmu_sc0007395.1_g000002 Rmu_sc0028418.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370790 Rroxscaffold_6G00421550 Rroxscaffold_7G00180370
rosa_rugosa	Rorug03G0022700 Rorug05G0320000 Rorug06G0006300 Rorug06G0405000
rosa_samantha	Rh2AG292200 Rh2DG120300 Rh2DG432800 Rh3AG083500 Rh3BG086000 Rh3CG086300 Rh3DG086900 Rh4BG183300 Rh6BG113400 Rh6CG111600 Rh6DG101300 Rh7CG459900 Rh7DG392600 Rh7DG481700
rosa_wichuraiana	Rw3G007150 Rw5G007850 Rw7G033040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	552
AccB1I	GGYRCC	1 cut(s)	135
AccBSI	CCGCTC	1 cut(s)	971
AccI	GTMKAC	1 cut(s)	184
AccII	CGCG	1 cut(s)	871
AciI	CCGC	6 cut(s)	54, 277, 539, 690, 869, 969
AclWI	GGATC	5 cut(s)	22, 121, 134, 146, 477
AcvI	CACGTG	1 cut(s)	865
AdeI	CACNNNGTG	1 cut(s)	614
AfaI	GTAC	3 cut(s)	260, 731, 784
AfiI	CCNNNNNNNGG	2 cut(s)	194, 647
AflIII	ACRYGT	1 cut(s)	862
AgsI	TTSAA	2 cut(s)	736, 964
AjiI	CACGTC	1 cut(s)	286
AjuI	GAANNNNNNNTTGG	2 cut(s)	577, 609
AluBI	AGCT	6 cut(s)	356, 380, 385, 682, 759, 797
AluI	AGCT	6 cut(s)	356, 380, 385, 682, 759, 797
Alw21I	GWGCWC	1 cut(s)	884
Alw26I	GTCTC	4 cut(s)	436, 697, 829, 951
AlwI	GGATC	5 cut(s)	22, 121, 134, 146, 477
AoxI	GGCC	1 cut(s)	909
ApeKI	GCWGC	3 cut(s)	580, 620, 623
ArsI	GACNNNNNNTTYG	2 cut(s)	275, 307
AspLEI	GCGC	2 cut(s)	63, 873
AspS9I	GGNCC	4 cut(s)	454, 517, 541, 655
AsuHPI	GGTGA	1 cut(s)	83
AvaII	GGWCC	4 cut(s)	454, 517, 541, 655
AxyI	CCTNAGG	1 cut(s)	156
BamHI	GGATCC	1 cut(s)	126
BanI	GGYRCC	1 cut(s)	135
BbrPI	CACGTG	1 cut(s)	865
BbsI	GAAGAC	1 cut(s)	940
Bbv12I	GWGCWC	1 cut(s)	884
BbvI	GCAGC	3 cut(s)	592, 607, 610
BccI	CCATC	2 cut(s)	313, 431
BceAI	ACGGC	3 cut(s)	149, 256, 845
BcgI	CGANNNNNNTGC	2 cut(s)	569, 603
BclI	TGATCA	2 cut(s)	342, 387
BcoDI	GTCTC	4 cut(s)	436, 697, 829, 951
BfaI	CTAG	1 cut(s)	500
BfoI	RGCGCY	1 cut(s)	64
BfuAI	ACCTGC	1 cut(s)	552
BglII	AGATCT	1 cut(s)	459
BisI	GCNGC	6 cut(s)	278, 581, 621, 624, 869, 969
BlpI	GCTNAGC	1 cut(s)	381
BlsI	GCNGC	6 cut(s)	279, 582, 622, 625, 870, 970
Bme18I	GGWCC	4 cut(s)	454, 517, 541, 655
BmgBI	CACGTC	1 cut(s)	286
BmgT120I	GGNCC	4 cut(s)	454, 517, 541, 655
BmiI	GGNNCC	4 cut(s)	128, 137, 455, 657
BmsI	GCATC	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	940
BpmI	CTGGAG	2 cut(s)	533, 917
Bpu1102I	GCTNAGC	1 cut(s)	381
BpuEI	CTTGAG	3 cut(s)	577, 781, 895
BsaAI	YACGTR	1 cut(s)	865
BsaBI	GATNNNNATC	1 cut(s)	405
BsaI	GGTCTC	1 cut(s)	436
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 647
Bse1I	ACTGG	1 cut(s)	550
Bse21I	CCTNAGG	1 cut(s)	156
Bse3DI	GCAATG	1 cut(s)	569
Bse8I	GATNNNNATC	1 cut(s)	405
BseGI	GGATG	1 cut(s)	328
BseJI	GATNNNNATC	1 cut(s)	405
BseLI	CCNNNNNNNGG	2 cut(s)	194, 647
BseMI	GCAATG	1 cut(s)	569
BseMII	CTCAG	4 cut(s)	170, 372, 447, 669
BseNI	ACTGG	1 cut(s)	550
BseXI	GCAGC	3 cut(s)	592, 607, 610
BseYI	CCCAGC	2 cut(s)	57, 189
Bsh1236I	CGCG	1 cut(s)	871
Bsh1285I	CGRYCG	2 cut(s)	110, 641
BshFI	GGCC	1 cut(s)	911
BshNI	GGYRCC	1 cut(s)	135
BsiEI	CGRYCG	2 cut(s)	110, 641
BsiHKAI	GWGCWC	1 cut(s)	884
BslI	CCNNNNNNNGG	2 cut(s)	194, 647
BsmAI	GTCTC	4 cut(s)	436, 697, 829, 951
BsmBI	CGTCTC	3 cut(s)	697, 829, 951
BsnI	GGCC	1 cut(s)	911
Bso31I	GGTCTC	1 cut(s)	436
Bsp1286I	GDGCHC	1 cut(s)	884
Bsp1720I	GCTNAGC	1 cut(s)	381
BspACI	CCGC	6 cut(s)	54, 277, 539, 690, 869, 969
BspANI	GGCC	1 cut(s)	911
BspCNI	CTCAG	4 cut(s)	169, 373, 446, 670
BspFNI	CGCG	1 cut(s)	871
BspLI	GGNNCC	4 cut(s)	128, 137, 455, 657
BspMI	ACCTGC	1 cut(s)	552
BspPI	GGATC	5 cut(s)	22, 121, 134, 146, 477
BspT107I	GGYRCC	1 cut(s)	135
BspTNI	GGTCTC	1 cut(s)	436
BsrBI	CCGCTC	1 cut(s)	971
BsrDI	GCAATG	1 cut(s)	569
BsrI	ACTGG	1 cut(s)	550
Bst4CI	ACNGT	2 cut(s)	514, 922
Bst6I	CTCTTC	1 cut(s)	773
BstBAI	YACGTR	1 cut(s)	865
BstC8I	GCNNGC	3 cut(s)	174, 358, 973
BstDEI	CTNAG	4 cut(s)	156, 381, 433, 678
BstF5I	GGATG	1 cut(s)	328
BstFNI	CGCG	1 cut(s)	871
BstH2I	RGCGCY	1 cut(s)	64
BstHHI	GCGC	2 cut(s)	63, 873
BstMAI	GTCTC	4 cut(s)	436, 697, 829, 951
BstMCI	CGRYCG	2 cut(s)	110, 641
BstMWI	GCNNNNNNNGC	4 cut(s)	112, 580, 865, 879
BstUI	CGCG	1 cut(s)	871
BstV1I	GCAGC	3 cut(s)	592, 607, 610
BstV2I	GAAGAC	1 cut(s)	940
BstX2I	RGATCY	3 cut(s)	126, 459, 469
BstYI	RGATCY	3 cut(s)	126, 459, 469
Bsu36I	CCTNAGG	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	911
BtrI	CACGTC	1 cut(s)	286
BtsCI	GGATG	1 cut(s)	328
BveI	ACCTGC	1 cut(s)	552
Cac8I	GCNNGC	3 cut(s)	174, 358, 973
CfoI	GCGC	2 cut(s)	63, 873
Cfr13I	GGNCC	4 cut(s)	454, 517, 541, 655
Csp6I	GTAC	3 cut(s)	259, 730, 783
CviAII	CATG	5 cut(s)	149, 179, 194, 414, 699
CviQI	GTAC	3 cut(s)	259, 730, 783
DdeI	CTNAG	4 cut(s)	156, 381, 433, 678
DraIII	CACNNNGTG	1 cut(s)	614
Eam1104I	CTCTTC	1 cut(s)	773
EarI	CTCTTC	1 cut(s)	773
EciI	GGCGGA	2 cut(s)	43, 554
Eco31I	GGTCTC	1 cut(s)	436
Eco47I	GGWCC	4 cut(s)	454, 517, 541, 655
Eco72I	CACGTG	1 cut(s)	865
Eco81I	CCTNAGG	1 cut(s)	156
Esp3I	CGTCTC	3 cut(s)	697, 829, 951
FaeI	CATG	5 cut(s)	152, 182, 197, 417, 702
FatI	CATG	5 cut(s)	148, 178, 193, 413, 698
FbaI	TGATCA	2 cut(s)	342, 387
FblI	GTMKAC	1 cut(s)	184
Fnu4HI	GCNGC	6 cut(s)	278, 581, 621, 624, 869, 969
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	6 cut(s)	278, 581, 621, 624, 869, 969
FspBI	CTAG	1 cut(s)	500
GlaI	GCGC	2 cut(s)	62, 872
GluI	GCNGC	6 cut(s)	278, 581, 621, 624, 869, 969
GsaI	CCCAGC	2 cut(s)	61, 193
GsuI	CTGGAG	2 cut(s)	533, 917
HaeII	RGCGCY	1 cut(s)	64
HaeIII	GGCC	1 cut(s)	911
HhaI	GCGC	2 cut(s)	63, 873
Hin1II	CATG	5 cut(s)	152, 182, 197, 417, 702
Hin6I	GCGC	2 cut(s)	61, 871
HinP1I	GCGC	2 cut(s)	61, 871
HincII	GTYRAC	1 cut(s)	185
HindII	GTYRAC	1 cut(s)	185
HinfI	GANTC	5 cut(s)	161, 566, 629, 708, 736
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	2 cut(s)	185, 517
Hpy188I	TCNGA	6 cut(s)	27, 168, 436, 444, 655, 886
Hpy188III	TCNNGA	4 cut(s)	158, 457, 556, 896
Hpy8I	GTNNAC	2 cut(s)	185, 517
Hpy99I	CGWCG	4 cut(s)	81, 105, 308, 831
HpyAV	CCTTC	3 cut(s)	444, 556, 816
HpyCH4III	ACNGT	2 cut(s)	514, 922
HpyCH4IV	ACGT	4 cut(s)	100, 285, 306, 864
HpyCH4V	TGCA	2 cut(s)	424, 662
HpyF10VI	GCNNNNNNNGC	4 cut(s)	112, 580, 865, 879
HpyF3I	CTNAG	4 cut(s)	156, 381, 433, 678
HpySE526I	ACGT	4 cut(s)	100, 285, 306, 864
Hsp92II	CATG	5 cut(s)	152, 182, 197, 417, 702
HspAI	GCGC	2 cut(s)	61, 871
Ksp22I	TGATCA	2 cut(s)	342, 387
LmnI	GCTCC	2 cut(s)	552, 794
Lsp1109I	GCAGC	3 cut(s)	592, 607, 610
LweI	GCATC	1 cut(s)	102
MaeI	CTAG	1 cut(s)	500
MaeII	ACGT	4 cut(s)	100, 285, 306, 864
MaeIII	GTNAC	3 cut(s)	281, 665, 673
MbiI	CCGCTC	1 cut(s)	971
MboII	GAAGA	4 cut(s)	459, 790, 831, 945
MflI	RGATCY	3 cut(s)	126, 459, 469
MhlI	GDGCHC	1 cut(s)	884
MluCI	AATT	1 cut(s)	338
MlyI	GAGTC	2 cut(s)	623, 702
MmeI	TCCRAC	3 cut(s)	104, 154, 378
MseI	TTAA	1 cut(s)	522
MvnI	CGCG	1 cut(s)	871
MwoI	GCNNNNNNNGC	4 cut(s)	112, 580, 865, 879
NlaIII	CATG	5 cut(s)	152, 182, 197, 417, 702
NlaIV	GGNNCC	4 cut(s)	128, 137, 455, 657
NmeAIII	GCCGAG	2 cut(s)	195, 937
NmuCI	GTSAC	1 cut(s)	281
PcsI	WCGNNNNNNNCGW	3 cut(s)	246, 835, 950
PfeI	GAWTC	3 cut(s)	161, 566, 736
PkrI	GCNGC	6 cut(s)	279, 582, 622, 625, 870, 970
PleI	GAGTC	2 cut(s)	623, 702
PmaCI	CACGTG	1 cut(s)	865
PmlI	CACGTG	1 cut(s)	865
PpsI	GAGTC	2 cut(s)	623, 702
Ppu21I	YACGTR	1 cut(s)	865
PspCI	CACGTG	1 cut(s)	865
PspFI	CCCAGC	2 cut(s)	57, 189
PspN4I	GGNNCC	4 cut(s)	128, 137, 455, 657
PspPI	GGNCC	4 cut(s)	454, 517, 541, 655
PsuI	RGATCY	3 cut(s)	126, 459, 469
RsaI	GTAC	3 cut(s)	260, 731, 784
RsaNI	GTAC	3 cut(s)	259, 730, 783
SalI	GTCGAC	1 cut(s)	183
SaqAI	TTAA	1 cut(s)	522
SatI	GCNGC	6 cut(s)	278, 581, 621, 624, 869, 969
Sau96I	GGNCC	4 cut(s)	454, 517, 541, 655
SchI	GAGTC	2 cut(s)	623, 702
SduI	GDGCHC	1 cut(s)	884
SfaNI	GCATC	1 cut(s)	102
SinI	GGWCC	4 cut(s)	454, 517, 541, 655
SmlI	CTYRAG	3 cut(s)	556, 760, 874
SmoI	CTYRAG	3 cut(s)	556, 760, 874
Sse9I	AATT	1 cut(s)	338
SsiI	CCGC	6 cut(s)	54, 277, 539, 690, 869, 969
SspMI	CTAG	1 cut(s)	500
TaaI	ACNGT	2 cut(s)	514, 922
TaiI	ACGT	4 cut(s)	103, 288, 309, 867
TaqI	TCGA	6 cut(s)	76, 184, 303, 711, 739, 953
TaqII	GACCGA	2 cut(s)	124, 655
TasI	AATT	1 cut(s)	338
TatI	WGTACW	1 cut(s)	729
TauI	GCSGC	3 cut(s)	280, 871, 971
TfiI	GAWTC	3 cut(s)	161, 566, 736
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	3 cut(s)	580, 620, 623
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	1 cut(s)	402
TspGWI	ACGGA	1 cut(s)	282
VpaK11BI	GGWCC	4 cut(s)	454, 517, 541, 655
XmiI	GTMKAC	1 cut(s)	184
XspI	CTAG	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.