Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001882

Physical Location & Seq

Genomic Coordinates Reverse (-)

32153120 .. 32155022

Gene Structure 1903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG183300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGATCCTCAAGATTCTCGGAGGCAAACACATGGTCGACCCCAGCATGGTCCGGGTTCTGGGTCGCTCGGCTTTCCACGACACCACTCTCACCGGCTTCTGCGACCTGTCGTACCTAGGCGGAGAGTGGCGGCGTGACGTGGCGTTTGCTGGTTTCGACGTTCTGATACAGATGAATGTTTCGGCTGATAAATTGATCAACGGGGTAGCTGGGATTGACCCACAAAGGAGAGCTGAGCTGATCAAGGTGCTTCTGCTTGATGAGATCACGGTGGACCTTGATGTGCTAGCGAGGGCGGACCTGCTCCAGTTCTTGAGGAAGGAATGTGAGGAGCGAGGTGCTATGATCCCCCACCCGATCTCACCACCATTCACAGACGAGTGCTTGAGCTCGAAGAGATTCTCGAGCGATGCCGCCGAGACGATGATTCCGAATCACCATTCTCAGGATTTACTTAACAACTACGCTGTGTTTCTCCGGAGTAAAGTTGAAAAGATAGTACCTGATTGCTCTGATGTTTGTCTGTTAGGGGATCAAGACTTTGAAGCATATATGGGACGTTTTGAGCAGGAGCTTAGCTCCGTGGAGGCCGAGGGCGCCAAGGTTTCCGATGAAATTGAGGGTCTAGTTCGAACCCATGAGGAAGATTTTAATCGGCTCAATGTTGATATTGGGCAGTTGAAATGTTCATTGGATTTTGTTGGATCGCAGCTGGTTGGTTTTCTGTTGATAAATCATTGGATAAAATATGGCATCAGCCTCTTTGGTGGTAATATAAGTAGTGCCAACCTATTTGATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

267

Amino Acids

29.73

Weight (kDa)

4.78

Isoelectric Point (pI)

40.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02270 AT5G02270
fragaria_vesca	FvH4_6g08040
malus_domestica	MD03G1234700.v1.1 MD04G1190800.v1.1 MD12G1203100.v1.1
prunus_persica	Prupe.6G308800_v2.0.a1
pyrus_communis	pycom12g18950
rosa_chinensis	RchiOBHm_Chr2g0097941 RchiOBHm_Chr3g0457711 RchiOBHm_Chr5g0083331 RchiOBHm_Chr7g0234131
rosa_laevigata	RLG00000019926 RLG00000025192
rosa_multiflora	Rmu_sc0000566.1_g000046 Rmu_sc0001301.1_g000082 Rmu_sc0002068.1_g000007 Rmu_sc0004502.1_g000016 Rmu_sc0005743.1_g000009 Rmu_sc0007131.1_g000011 Rmu_sc0007395.1_g000002 Rmu_sc0028418.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370790 Rroxscaffold_6G00421550 Rroxscaffold_7G00180370
rosa_rugosa	Rorug03G0022700 Rorug05G0320000 Rorug06G0006300 Rorug06G0405000
rosa_samantha	Rh2AG292200 Rh2DG120300 Rh2DG432800 Rh3AG083500 Rh3BG086000 Rh3CG086300 Rh3DG086900 Rh4BG183300 Rh6BG113400 Rh6CG111600 Rh6DG101300 Rh7CG459900 Rh7DG392600 Rh7DG481700
rosa_wichuraiana	Rw3G007150 Rw5G007850 Rw7G033040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	309
AccB1I	GGYRCC	1 cut(s)	596
AccI	GTMKAC	1 cut(s)	36
AccIII	TCCGGA	1 cut(s)	477
AciI	CCGC	4 cut(s)	120, 130, 296, 414
AclWI	GGATC	3 cut(s)	340, 540, 712
AcyI	GRCGYC	1 cut(s)	597
AfaI	GTAC	2 cut(s)	113, 501
AfiI	CCNNNNNNNGG	3 cut(s)	46, 58, 445
AgsI	TTSAA	3 cut(s)	491, 545, 682
AjiI	CACGTC	1 cut(s)	139
AjuI	GAANNNNNNNTTGG	2 cut(s)	674, 706
AluBI	AGCT	7 cut(s)	209, 233, 238, 390, 574, 579, 712
AluI	AGCT	7 cut(s)	209, 233, 238, 390, 574, 579, 712
Alw21I	GWGCWC	1 cut(s)	392
Alw26I	GTCTC	1 cut(s)	413
AlwI	GGATC	3 cut(s)	340, 540, 712
Ama87I	CYCGRG	1 cut(s)	403
Aor13HI	TCCGGA	1 cut(s)	477
AoxI	GGCC	1 cut(s)	588
ApeKI	GCWGC	1 cut(s)	709
ArsI	GACNNNNNNTTYG	4 cut(s)	18, 50, 128, 160
Asp700I	GAANNNNTTC	1 cut(s)	398
AspA2I	CCTAGG	1 cut(s)	115
AspLEI	GCGC	1 cut(s)	599
AspS9I	GGNCC	3 cut(s)	49, 274, 298
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	3 cut(s)	82, 354, 428
AsuII	TTCGAA	1 cut(s)	631
AsuNHI	GCTAGC	1 cut(s)	286
AvaI	CYCGRG	1 cut(s)	403
AvaII	GGWCC	3 cut(s)	49, 274, 298
AvrII	CCTAGG	1 cut(s)	115
BanI	GGYRCC	1 cut(s)	596
BanII	GRGCYC	1 cut(s)	392
Bbv12I	GWGCWC	1 cut(s)	392
BbvI	GCAGC	1 cut(s)	721
BclI	TGATCA	2 cut(s)	195, 240
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	413
BfaI	CTAG	3 cut(s)	116, 287, 626
BfoI	RGCGCY	1 cut(s)	600
BfuAI	ACCTGC	1 cut(s)	309
BisI	GCNGC	3 cut(s)	131, 414, 710
BlnI	CCTAGG	1 cut(s)	115
BlpI	GCTNAGC	2 cut(s)	234, 575
BlsI	GCNGC	3 cut(s)	132, 415, 711
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	3 cut(s)	49, 274, 298
BmeT110I	CYCGRG	1 cut(s)	403
BmgBI	CACGTC	1 cut(s)	139
BmgT120I	GGNCC	3 cut(s)	49, 274, 298
BmiI	GGNNCC	1 cut(s)	598
BmrFI	CCNGG	1 cut(s)	53
BmsI	GCATC	2 cut(s)	400, 762
BmtI	GCTAGC	1 cut(s)	290
BplI	GAGNNNNNCTC	2 cut(s)	563, 595
BpmI	CTGGAG	1 cut(s)	290
Bpu1102I	GCTNAGC	2 cut(s)	234, 575
Bpu14I	TTCGAA	1 cut(s)	631
BpuEI	CTTGAG	2 cut(s)	334, 406
BpuMI	CCSGG	1 cut(s)	53
BsaBI	GATNNNNATC	1 cut(s)	651
BsaHI	GRCGYC	1 cut(s)	597
BsaJI	CCNNGG	4 cut(s)	115, 582, 591, 600
BsaWI	WCCGGW	1 cut(s)	477
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 58, 445
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	1 cut(s)	307
Bse8I	GATNNNNATC	1 cut(s)	651
BseAI	TCCGGA	1 cut(s)	477
BseDI	CCNNGG	4 cut(s)	115, 582, 591, 600
BseJI	GATNNNNATC	1 cut(s)	651
BseLI	CCNNNNNNNGG	3 cut(s)	46, 58, 445
BseMII	CTCAG	2 cut(s)	225, 458
BseNI	ACTGG	1 cut(s)	307
BseRI	GAGGAG	1 cut(s)	344
BseXI	GCAGC	1 cut(s)	721
BseYI	CCCAGC	2 cut(s)	41, 209
BshFI	GGCC	1 cut(s)	590
BshNI	GGYRCC	1 cut(s)	596
BsiHKAI	GWGCWC	1 cut(s)	392
BsiHKCI	CYCGRG	1 cut(s)	403
BsiSI	CCGG	3 cut(s)	52, 93, 478
BslFI	GGGAC	1 cut(s)	570
BslI	CCNNNNNNNGG	3 cut(s)	46, 58, 445
BsmAI	GTCTC	1 cut(s)	413
BsmBI	CGTCTC	1 cut(s)	413
BsmFI	GGGAC	1 cut(s)	570
BsnI	GGCC	1 cut(s)	590
BsoBI	CYCGRG	1 cut(s)	403
Bsp119I	TTCGAA	1 cut(s)	631
Bsp1286I	GDGCHC	1 cut(s)	392
Bsp13I	TCCGGA	1 cut(s)	477
Bsp143I	GATC	8 cut(s)	3, 195, 240, 264, 345, 357, 532, 704
Bsp1720I	GCTNAGC	2 cut(s)	234, 575
BspACI	CCGC	4 cut(s)	120, 130, 296, 414
BspANI	GGCC	1 cut(s)	590
BspCNI	CTCAG	2 cut(s)	226, 457
BspEI	TCCGGA	1 cut(s)	477
BspLI	GGNNCC	1 cut(s)	598
BspMI	ACCTGC	1 cut(s)	309
BspOI	GCTAGC	1 cut(s)	290
BspPI	GGATC	3 cut(s)	340, 540, 712
BspT104I	TTCGAA	1 cut(s)	631
BspT107I	GGYRCC	1 cut(s)	596
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	307
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	4 cut(s)	115, 582, 591, 600
BssMI	GATC	8 cut(s)	3, 195, 240, 264, 345, 357, 532, 704
BssNI	GRCGYC	1 cut(s)	597
BssT1I	CCWWGG	2 cut(s)	115, 600
Bst4CI	ACNGT	1 cut(s)	271
Bst6I	CTCTTC	1 cut(s)	389
BstACI	GRCGYC	1 cut(s)	597
BstBI	TTCGAA	1 cut(s)	631
BstC8I	GCNNGC	1 cut(s)	288
BstDEI	CTNAG	3 cut(s)	234, 444, 575
BstDSI	CCRYGG	1 cut(s)	582
BstH2I	RGCGCY	1 cut(s)	600
BstHHI	GCGC	1 cut(s)	599
BstKTI	GATC	8 cut(s)	6, 198, 243, 267, 348, 360, 535, 707
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	8 cut(s)	3, 195, 240, 264, 345, 357, 532, 704
BstMWI	GCNNNNNNNGC	1 cut(s)	596
BstSCI	CCNGG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	721
BsuRI	GGCC	1 cut(s)	590
BtgI	CCRYGG	1 cut(s)	582
BtgZI	GCGATG	1 cut(s)	423
BtrI	CACGTC	1 cut(s)	139
BveI	ACCTGC	1 cut(s)	309
Cac8I	GCNNGC	1 cut(s)	288
CfoI	GCGC	1 cut(s)	599
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	3 cut(s)	49, 274, 298
Csp6I	GTAC	2 cut(s)	112, 500
CviAII	CATG	3 cut(s)	31, 46, 638
CviQI	GTAC	2 cut(s)	112, 500
DdeI	CTNAG	3 cut(s)	234, 444, 575
DinI	GGCGCC	1 cut(s)	598
DpnI	GATC	8 cut(s)	5, 197, 242, 266, 347, 359, 534, 706
DpnII	GATC	8 cut(s)	3, 195, 240, 264, 345, 357, 532, 704
Eam1104I	CTCTTC	1 cut(s)	389
EarI	CTCTTC	1 cut(s)	389
EciI	GGCGGA	2 cut(s)	135, 311
Ecl136II	GAGCTC	1 cut(s)	390
Eco130I	CCWWGG	2 cut(s)	115, 600
Eco24I	GRGCYC	1 cut(s)	392
Eco47I	GGWCC	3 cut(s)	49, 274, 298
Eco53kI	GAGCTC	1 cut(s)	390
Eco88I	CYCGRG	1 cut(s)	403
EcoICRI	GAGCTC	1 cut(s)	390
EcoT14I	CCWWGG	2 cut(s)	115, 600
EcoT38I	GRGCYC	1 cut(s)	392
EgeI	GGCGCC	1 cut(s)	598
EheI	GGCGCC	1 cut(s)	598
ErhI	CCWWGG	2 cut(s)	115, 600
Esp3I	CGTCTC	1 cut(s)	413
FaeI	CATG	3 cut(s)	34, 49, 641
FaiI	YATR	9 cut(s)	32, 47, 344, 550, 552, 554, 639, 750, 776
FaqI	GGGAC	1 cut(s)	570
FatI	CATG	3 cut(s)	30, 45, 637
FbaI	TGATCA	2 cut(s)	195, 240
FblI	GTMKAC	1 cut(s)	36
Fnu4HI	GCNGC	3 cut(s)	131, 414, 710
FriOI	GRGCYC	1 cut(s)	392
Fsp4HI	GCNGC	3 cut(s)	131, 414, 710
FspBI	CTAG	3 cut(s)	116, 287, 626
GlaI	GCGC	1 cut(s)	598
GluI	GCNGC	3 cut(s)	131, 414, 710
GsaI	CCCAGC	2 cut(s)	45, 213
GsuI	CTGGAG	1 cut(s)	290
HaeII	RGCGCY	1 cut(s)	600
HaeIII	GGCC	1 cut(s)	590
HapII	CCGG	3 cut(s)	52, 93, 478
HhaI	GCGC	1 cut(s)	599
Hin1I	GRCGYC	1 cut(s)	597
Hin1II	CATG	3 cut(s)	34, 49, 641
Hin6I	GCGC	1 cut(s)	597
HinP1I	GCGC	1 cut(s)	597
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	4 cut(s)	13, 399, 427, 433
HpaII	CCGG	3 cut(s)	52, 93, 478
HphI	GGTGA	3 cut(s)	82, 354, 428
Hpy166II	GTNNAC	2 cut(s)	37, 274
Hpy188I	TCNGA	5 cut(s)	20, 165, 432, 514, 610
Hpy188III	TCNNGA	6 cut(s)	10, 313, 403, 446, 478, 536
Hpy8I	GTNNAC	2 cut(s)	37, 274
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	1 cut(s)	313
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	3 cut(s)	138, 159, 559
HpyF10VI	GCNNNNNNNGC	1 cut(s)	596
HpyF3I	CTNAG	3 cut(s)	234, 444, 575
HpySE526I	ACGT	3 cut(s)	138, 159, 559
Hsp92I	GRCGYC	1 cut(s)	597
Hsp92II	CATG	3 cut(s)	34, 49, 641
HspAI	GCGC	1 cut(s)	597
KasI	GGCGCC	1 cut(s)	596
Kpn2I	TCCGGA	1 cut(s)	477
Ksp22I	TGATCA	2 cut(s)	195, 240
Kzo9I	GATC	8 cut(s)	3, 195, 240, 264, 345, 357, 532, 704
LmnI	GCTCC	4 cut(s)	309, 331, 571, 584
Lsp1109I	GCAGC	1 cut(s)	721
LweI	GCATC	2 cut(s)	400, 762
MaeI	CTAG	3 cut(s)	116, 287, 626
MaeII	ACGT	3 cut(s)	138, 159, 559
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	8 cut(s)	5, 197, 242, 266, 347, 359, 534, 706
MboI	GATC	8 cut(s)	3, 195, 240, 264, 345, 357, 532, 704
MboII	GAAGA	2 cut(s)	406, 656
MhlI	GDGCHC	1 cut(s)	392
MluCI	AATT	2 cut(s)	191, 615
Mly113I	GGCGCC	1 cut(s)	597
MmeI	TCCRAC	1 cut(s)	682
MroI	TCCGGA	1 cut(s)	477
MroXI	GAANNNNTTC	1 cut(s)	398
MseI	TTAA	3 cut(s)	456, 651, 802
MspA1I	CMGCKG	1 cut(s)	712
MspI	CCGG	3 cut(s)	52, 93, 478
MspR9I	CCNGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	596
NarI	GGCGCC	1 cut(s)	597
NciI	CCSGG	1 cut(s)	53
NdeII	GATC	8 cut(s)	3, 195, 240, 264, 345, 357, 532, 704
NheI	GCTAGC	1 cut(s)	286
NlaIII	CATG	3 cut(s)	34, 49, 641
NlaIV	GGNNCC	1 cut(s)	598
NmeAIII	GCCGAG	3 cut(s)	47, 442, 616
NmuCI	GTSAC	1 cut(s)	134
NspV	TTCGAA	1 cut(s)	631
PaeR7I	CTCGAG	1 cut(s)	403
PcsI	WCGNNNNNNNCGW	1 cut(s)	428
PdmI	GAANNNNTTC	1 cut(s)	398
PfeI	GAWTC	4 cut(s)	13, 399, 427, 433
PkrI	GCNGC	3 cut(s)	132, 415, 711
PluTI	GGCGCC	1 cut(s)	600
Psp124BI	GAGCTC	1 cut(s)	392
PspFI	CCCAGC	2 cut(s)	41, 209
PspN4I	GGNNCC	1 cut(s)	598
PspPI	GGNCC	3 cut(s)	49, 274, 298
PvuII	CAGCTG	1 cut(s)	712
RsaI	GTAC	2 cut(s)	113, 501
RsaNI	GTAC	2 cut(s)	112, 500
SacI	GAGCTC	1 cut(s)	392
SalI	GTCGAC	1 cut(s)	35
SaqAI	TTAA	3 cut(s)	456, 651, 802
SatI	GCNGC	3 cut(s)	131, 414, 710
Sau3AI	GATC	8 cut(s)	3, 195, 240, 264, 345, 357, 532, 704
Sau96I	GGNCC	3 cut(s)	49, 274, 298
ScrFI	CCNGG	1 cut(s)	53
SduI	GDGCHC	1 cut(s)	392
SfaNI	GCATC	2 cut(s)	400, 762
SfoI	GGCGCC	1 cut(s)	598
Sfr274I	CTCGAG	1 cut(s)	403
SfuI	TTCGAA	1 cut(s)	631
SinI	GGWCC	3 cut(s)	49, 274, 298
SlaI	CTCGAG	1 cut(s)	403
SmlI	CTYRAG	4 cut(s)	8, 313, 385, 403
SmoI	CTYRAG	4 cut(s)	8, 313, 385, 403
Sse9I	AATT	2 cut(s)	191, 615
SsiI	CCGC	4 cut(s)	120, 130, 296, 414
SspDI	GGCGCC	1 cut(s)	596
SspMI	CTAG	3 cut(s)	116, 287, 626
SstI	GAGCTC	1 cut(s)	392
StyD4I	CCNGG	1 cut(s)	51
StyI	CCWWGG	2 cut(s)	115, 600
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	3 cut(s)	141, 162, 562
TaqI	TCGA	5 cut(s)	36, 156, 392, 404, 631
TasI	AATT	2 cut(s)	191, 615
TauI	GCSGC	2 cut(s)	133, 416
TfiI	GAWTC	4 cut(s)	13, 399, 427, 433
Tru1I	TTAA	3 cut(s)	456, 651, 802
Tru9I	TTAA	3 cut(s)	456, 651, 802
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	1 cut(s)	709
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	3 cut(s)	188, 627, 678
TspGWI	ACGGA	1 cut(s)	571
VpaK11BI	GGWCC	3 cut(s)	49, 274, 298
XhoI	CTCGAG	1 cut(s)	403
XmaJI	CCTAGG	1 cut(s)	115
XmiI	GTMKAC	1 cut(s)	36
XmnI	GAANNNNTTC	1 cut(s)	398
XspI	CTAG	3 cut(s)	116, 287, 626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.