Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0014619

Physical Location & Seq

Genomic Coordinates Reverse (-)

1178344 .. 1181716

Gene Structure 3373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1013000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCAGCAATTTACAGCCTCTACATCATTAACAAATCAGGCGGCTTGATCTTCTACAAGGACTATGGGTCGGCGGGACGAATGGACACGAATGATAGCTTGAGGGTTGCAAGCTTGTGGCACTCAATGCACGCCATTTCTCAGCAGCTGTCGCCAGTATCAGGCTGTTTCGGCATCGAGCTCCTCCAAGCTGACACTTTCGATCTTCATTGCTTTCAATCACTCACCGGGACAAAGTTCTTTGTTGTGTGTGAGCCTGGGACGCAGCACATGGAAGGTCTCTTGAAACATATCTATGAGTTGTACACCGATTACGTCTTGAAGAACCCCTTTTATGAGATGGAGATGCCAATACGATGCGAGCTCTTCGAAATCAACCTAACGCAGGCAATACAGAAGGATCGTGTTGCCTTGTTGGCCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006888 GO:0008150 GO:0016192 GO:0017016 GO:0017112 GO:0017137 GO:0019899 GO:0030008 GO:0031267 GO:0032991 GO:0044424 GO:0044464 GO:0046907 GO:0048193 GO:0051020 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065007 GO:0065009 GO:0098772 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sybindin

Protein Analysis

142

Amino Acids

16.08

Weight (kDa)

5.65

Isoelectric Point (pI)

44.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sybindin	PF04099	4 - 133	3.6e-51	Sybindin-like family
Sedlin_N	PF04628	16 - 133	8e-08	Sedlin, N-terminal conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02280
fragaria_vesca	FvH4_6g08030
malus_domestica	MD12G1203200.v1.1 MD14G1013000.v1.1
prunus_persica	Prupe.6G309100_v2.0.a1
pyrus_communis	pycom12g18970 pycom14g01100
rosa_chinensis	RchiOBHm_Chr3g0457701
rosa_laevigata	RLG00000025193
rosa_multiflora	Rmu_sc0007395.1_g000003 Rmu_sc0028418.1_g000003
rosa_roxburghii	Rroxscaffold_6G00421560
rosa_rugosa	Rorug03G0022700
rosa_samantha	Rh3AG083400 Rh3CG086200 Rh3DG086800
rosa_wichuraiana	Rw3G007140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	42, 74
AclWI	GGATC	1 cut(s)	408
AcoI	YGGCCR	1 cut(s)	417
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	2 cut(s)	161, 385
AgsI	TTSAA	3 cut(s)	218, 286, 322
AhdI	GACNNNNNGTC	1 cut(s)	67
AjnI	CCWGG	1 cut(s)	256
AluBI	AGCT	6 cut(s)	99, 114, 148, 181, 191, 364
AluI	AGCT	6 cut(s)	99, 114, 148, 181, 191, 364
Alw21I	GWGCWC	2 cut(s)	183, 366
Alw26I	GTCTC	1 cut(s)	284
AlwI	GGATC	1 cut(s)	408
AlwNI	CAGNNNCTG	1 cut(s)	148
AoxI	GGCC	1 cut(s)	417
ApeKI	GCWGC	3 cut(s)	5, 145, 265
AsuC2I	CCSGG	1 cut(s)	229
AsuHPI	GGTGA	1 cut(s)	217
AsuII	TTCGAA	1 cut(s)	369
BalI	TGGCCA	1 cut(s)	419
BanII	GRGCYC	2 cut(s)	183, 366
Bbv12I	GWGCWC	2 cut(s)	183, 366
BbvI	GCAGC	3 cut(s)	17, 157, 277
BccI	CCATC	1 cut(s)	334
BciT130I	CCWGG	1 cut(s)	258
BcnI	CCSGG	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	284
BglI	GCCNNNNNGGC	1 cut(s)	416
BisI	GCNGC	4 cut(s)	6, 43, 146, 266
BlsI	GCNGC	4 cut(s)	7, 44, 147, 267
Bme1390I	CCNGG	2 cut(s)	229, 258
BmeRI	GACNNNNNGTC	1 cut(s)	67
BmrFI	CCNGG	2 cut(s)	229, 258
BmsI	GCATC	3 cut(s)	183, 336, 347
Bpu14I	TTCGAA	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	121
BpuMI	CCSGG	1 cut(s)	229
BsaI	GGTCTC	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 385
Bse1I	ACTGG	1 cut(s)	155
Bse3DI	GCAATG	1 cut(s)	208
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	257
BseLI	CCNNNNNNNGG	2 cut(s)	161, 385
BseMI	GCAATG	1 cut(s)	208
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	1 cut(s)	155
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	3 cut(s)	17, 157, 277
BshFI	GGCC	1 cut(s)	419
BsiHKAI	GWGCWC	2 cut(s)	183, 366
BsiSI	CCGG	1 cut(s)	228
BslFI	GGGAC	3 cut(s)	90, 244, 274
BslI	CCNNNNNNNGG	2 cut(s)	161, 385
BsmAI	GTCTC	1 cut(s)	284
BsmFI	GGGAC	3 cut(s)	90, 244, 274
BsnI	GGCC	1 cut(s)	419
Bso31I	GGTCTC	1 cut(s)	284
Bsp119I	TTCGAA	1 cut(s)	369
Bsp1286I	GDGCHC	2 cut(s)	183, 366
Bsp1407I	TGTACA	1 cut(s)	303
Bsp143I	GATC	3 cut(s)	48, 202, 400
BspACI	CCGC	2 cut(s)	42, 74
BspANI	GGCC	1 cut(s)	419
BspCNI	CTCAG	1 cut(s)	154
BspPI	GGATC	1 cut(s)	408
BspQI	GCTCTTC	1 cut(s)	371
BspT104I	TTCGAA	1 cut(s)	369
BspTNI	GGTCTC	1 cut(s)	284
BsrDI	GCAATG	1 cut(s)	208
BsrGI	TGTACA	1 cut(s)	303
BsrI	ACTGG	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	257
BssMI	GATC	3 cut(s)	48, 202, 400
Bst2UI	CCWGG	1 cut(s)	258
Bst6I	CTCTTC	1 cut(s)	371
BstAPI	GCANNNNNTGC	1 cut(s)	127
BstAUI	TGTACA	1 cut(s)	303
BstBI	TTCGAA	1 cut(s)	369
BstC8I	GCNNGC	4 cut(s)	112, 132, 362, 387
BstDEI	CTNAG	1 cut(s)	141
BstENI	CCTNNNNNAGG	1 cut(s)	383
BstKTI	GATC	3 cut(s)	51, 205, 403
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	3 cut(s)	48, 202, 400
BstMWI	GCNNNNNNNGC	5 cut(s)	127, 151, 171, 262, 416
BstNI	CCWGG	1 cut(s)	258
BstSCI	CCNGG	2 cut(s)	227, 256
BstV1I	GCAGC	3 cut(s)	17, 157, 277
BsuRI	GGCC	1 cut(s)	419
Cac8I	GCNNGC	4 cut(s)	112, 132, 362, 387
CaiI	CAGNNNCTG	1 cut(s)	148
CseI	GACGC	1 cut(s)	271
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	1 cut(s)	271
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	3 cut(s)	50, 204, 402
DpnII	GATC	3 cut(s)	48, 202, 400
DriI	GACNNNNNGTC	1 cut(s)	67
EaeI	YGGCCR	1 cut(s)	417
Eam1104I	CTCTTC	1 cut(s)	371
Eam1105I	GACNNNNNGTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	371
Ecl136II	GAGCTC	2 cut(s)	181, 364
Eco24I	GRGCYC	2 cut(s)	183, 366
Eco31I	GGTCTC	1 cut(s)	284
Eco53kI	GAGCTC	2 cut(s)	181, 364
EcoICRI	GAGCTC	2 cut(s)	181, 364
EcoNI	CCTNNNNNAGG	1 cut(s)	383
EcoRII	CCWGG	1 cut(s)	256
EcoT38I	GRGCYC	2 cut(s)	183, 366
FaeI	CATG	1 cut(s)	274
FaiI	YATR	5 cut(s)	66, 272, 291, 297, 336
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FaqI	GGGAC	3 cut(s)	90, 244, 274
FatI	CATG	1 cut(s)	270
FauI	CCCGC	1 cut(s)	67
Fnu4HI	GCNGC	4 cut(s)	6, 43, 146, 266
FriOI	GRGCYC	2 cut(s)	183, 366
Fsp4HI	GCNGC	4 cut(s)	6, 43, 146, 266
GluI	GCNGC	4 cut(s)	6, 43, 146, 266
HaeIII	GGCC	1 cut(s)	419
HapII	CCGG	1 cut(s)	228
HgaI	GACGC	1 cut(s)	271
Hin1II	CATG	1 cut(s)	274
HindIII	AAGCTT	1 cut(s)	112
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	1 cut(s)	306
Hpy188III	TCNNGA	2 cut(s)	283, 319
Hpy8I	GTNNAC	1 cut(s)	306
HpyAV	CCTTC	2 cut(s)	269, 391
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	2 cut(s)	110, 130
HpyF10VI	GCNNNNNNNGC	5 cut(s)	127, 151, 171, 262, 416
HpyF3I	CTNAG	1 cut(s)	141
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	1 cut(s)	274
Kzo9I	GATC	3 cut(s)	48, 202, 400
LguI	GCTCTTC	1 cut(s)	371
LmnI	GCTCC	1 cut(s)	186
LpnPI	CCDG	7 cut(s)	24, 147, 168, 241, 243, 270, 371
Lsp1109I	GCAGC	3 cut(s)	17, 157, 277
LweI	GCATC	3 cut(s)	183, 336, 347
MaeII	ACGT	1 cut(s)	315
MalI	GATC	3 cut(s)	50, 204, 402
MboI	GATC	3 cut(s)	48, 202, 400
MboII	GAAGA	4 cut(s)	43, 197, 334, 358
MhlI	GDGCHC	2 cut(s)	183, 366
MlsI	TGGCCA	1 cut(s)	419
MluCI	AATT	1 cut(s)	9
MluNI	TGGCCA	1 cut(s)	419
MnlI	CCTC	3 cut(s)	29, 96, 194
Mox20I	TGGCCA	1 cut(s)	419
MscI	TGGCCA	1 cut(s)	419
MseI	TTAA	1 cut(s)	30
MslI	CAYNNNNRTG	1 cut(s)	294
Msp20I	TGGCCA	1 cut(s)	419
MspA1I	CMGCKG	1 cut(s)	148
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	2 cut(s)	229, 258
MvaI	CCWGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	5 cut(s)	127, 151, 171, 262, 416
NciI	CCSGG	1 cut(s)	229
NdeII	GATC	3 cut(s)	48, 202, 400
NlaIII	CATG	1 cut(s)	274
NspV	TTCGAA	1 cut(s)	369
PciSI	GCTCTTC	1 cut(s)	371
PkrI	GCNGC	4 cut(s)	7, 44, 147, 267
Psp124BI	GAGCTC	2 cut(s)	183, 366
Psp6I	CCWGG	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	256
PstNI	CAGNNNCTG	1 cut(s)	148
PvuII	CAGCTG	1 cut(s)	148
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
RseI	CAYNNNNRTG	1 cut(s)	294
SacI	GAGCTC	2 cut(s)	183, 366
SapI	GCTCTTC	1 cut(s)	371
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	4 cut(s)	6, 43, 146, 266
Sau3AI	GATC	3 cut(s)	48, 202, 400
ScrFI	CCNGG	2 cut(s)	229, 258
SduI	GDGCHC	2 cut(s)	183, 366
SetI	ASST	9 cut(s)	101, 116, 150, 183, 193, 280, 318, 366, 381
SfaNI	GCATC	3 cut(s)	183, 336, 347
SfuI	TTCGAA	1 cut(s)	369
SmiMI	CAYNNNNRTG	1 cut(s)	294
SmlI	CTYRAG	1 cut(s)	100
SmoI	CTYRAG	1 cut(s)	100
Sse9I	AATT	1 cut(s)	9
SsiI	CCGC	2 cut(s)	42, 74
SstI	GAGCTC	2 cut(s)	183, 366
StyD4I	CCNGG	2 cut(s)	227, 256
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	3 cut(s)	177, 201, 369
TasI	AATT	1 cut(s)	9
TatI	WGTACW	1 cut(s)	303
TauI	GCSGC	1 cut(s)	45
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TseI	GCWGC	3 cut(s)	5, 145, 265
TspDTI	ATGAA	1 cut(s)	197
XagI	CCTNNNNNAGG	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.