Trafficking protein particle complex subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G02280 |
| fragaria_vesca | FvH4_6g08030 |
| malus_domestica | MD12G1203200.v1.1 MD14G1013000.v1.1 |
| prunus_persica | Prupe.6G309100_v2.0.a1 |
| pyrus_communis | pycom12g18970 pycom14g01100 |
| rosa_chinensis | RchiOBHm_Chr3g0457701 |
| rosa_laevigata | RLG00000025193 |
| rosa_multiflora | Rmu_sc0007395.1_g000003 Rmu_sc0028418.1_g000003 |
| rosa_roxburghii | Rroxscaffold_6G00421560 |
| rosa_rugosa | Rorug03G0022700 |
| rosa_samantha | Rh3AG083400 Rh3CG086200 Rh3DG086800 |
| rosa_wichuraiana | Rw3G007140 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 42, 74 |
| AclWI | GGATC | 2 cut(s) | 76, 408 |
| AfaI | GTAC | 2 cut(s) | 262, 305 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 161, 385 |
| AgsI | TTSAA | 2 cut(s) | 286, 322 |
| AjnI | CCWGG | 1 cut(s) | 256 |
| AluBI | AGCT | 6 cut(s) | 99, 114, 181, 191, 301, 364 |
| AluI | AGCT | 6 cut(s) | 99, 114, 181, 191, 301, 364 |
| Alw21I | GWGCWC | 1 cut(s) | 366 |
| Alw26I | GTCTC | 2 cut(s) | 156, 284 |
| AlwI | GGATC | 2 cut(s) | 76, 408 |
| AoxI | GGCC | 1 cut(s) | 417 |
| ApeKI | GCWGC | 2 cut(s) | 5, 265 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 329 |
| AspLEI | GCGC | 1 cut(s) | 170 |
| AspS9I | GGNCC | 1 cut(s) | 418 |
| AsuC2I | CCSGG | 1 cut(s) | 229 |
| BanII | GRGCYC | 1 cut(s) | 366 |
| Bbv12I | GWGCWC | 1 cut(s) | 366 |
| BbvI | GCAGC | 2 cut(s) | 17, 277 |
| BccI | CCATC | 2 cut(s) | 76, 334 |
| BciT130I | CCWGG | 1 cut(s) | 258 |
| BcnI | CCSGG | 1 cut(s) | 229 |
| BcoDI | GTCTC | 2 cut(s) | 156, 284 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 416 |
| BisI | GCNGC | 3 cut(s) | 6, 43, 266 |
| BlsI | GCNGC | 3 cut(s) | 7, 44, 267 |
| Bme1390I | CCNGG | 2 cut(s) | 229, 258 |
| BmgT120I | GGNCC | 1 cut(s) | 418 |
| BmrFI | CCNGG | 2 cut(s) | 229, 258 |
| BmsI | GCATC | 2 cut(s) | 183, 336 |
| BpuEI | CTTGAG | 1 cut(s) | 121 |
| BpuMI | CCSGG | 1 cut(s) | 229 |
| BsaI | GGTCTC | 1 cut(s) | 284 |
| BsaWI | WCCGGW | 2 cut(s) | 154, 161 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 161, 385 |
| Bse118I | RCCGGY | 1 cut(s) | 170 |
| Bse3DI | GCAATG | 1 cut(s) | 208 |
| BseBI | CCWGG | 1 cut(s) | 258 |
| BseGI | GGATG | 1 cut(s) | 87 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 161, 385 |
| BseMI | GCAATG | 1 cut(s) | 208 |
| BseMII | CTCAG | 1 cut(s) | 155 |
| BseXI | GCAGC | 2 cut(s) | 17, 277 |
| BshFI | GGCC | 1 cut(s) | 419 |
| BsiHKAI | GWGCWC | 1 cut(s) | 366 |
| BsiSI | CCGG | 4 cut(s) | 155, 162, 171, 228 |
| BslFI | GGGAC | 1 cut(s) | 244 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 161, 385 |
| BsmAI | GTCTC | 2 cut(s) | 156, 284 |
| BsmFI | GGGAC | 1 cut(s) | 244 |
| BsnI | GGCC | 1 cut(s) | 419 |
| Bso31I | GGTCTC | 1 cut(s) | 284 |
| Bsp1286I | GDGCHC | 1 cut(s) | 366 |
| Bsp1407I | TGTACA | 1 cut(s) | 303 |
| Bsp143I | GATC | 4 cut(s) | 48, 68, 202, 400 |
| BspACI | CCGC | 2 cut(s) | 42, 74 |
| BspANI | GGCC | 1 cut(s) | 419 |
| BspCNI | CTCAG | 1 cut(s) | 154 |
| BspPI | GGATC | 2 cut(s) | 76, 408 |
| BspTNI | GGTCTC | 1 cut(s) | 284 |
| BsrDI | GCAATG | 1 cut(s) | 208 |
| BsrFI | RCCGGY | 1 cut(s) | 170 |
| BsrGI | TGTACA | 1 cut(s) | 303 |
| BssAI | RCCGGY | 1 cut(s) | 170 |
| BssMI | GATC | 4 cut(s) | 48, 68, 202, 400 |
| Bst2UI | CCWGG | 1 cut(s) | 258 |
| Bst4CI | ACNGT | 1 cut(s) | 357 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 127 |
| BstAUI | TGTACA | 1 cut(s) | 303 |
| BstC8I | GCNNGC | 5 cut(s) | 108, 112, 132, 172, 362 |
| BstDEI | CTNAG | 1 cut(s) | 141 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 383 |
| BstF5I | GGATG | 1 cut(s) | 87 |
| BstHHI | GCGC | 1 cut(s) | 170 |
| BstKTI | GATC | 4 cut(s) | 51, 71, 205, 403 |
| BstMAI | GTCTC | 2 cut(s) | 156, 284 |
| BstMBI | GATC | 4 cut(s) | 48, 68, 202, 400 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 127, 262, 416 |
| BstNI | CCWGG | 1 cut(s) | 258 |
| BstSCI | CCNGG | 2 cut(s) | 227, 256 |
| BstV1I | GCAGC | 2 cut(s) | 17, 277 |
| BsuRI | GGCC | 1 cut(s) | 419 |
| BtsCI | GGATG | 1 cut(s) | 87 |
| BtsIMutI | CAGTG | 2 cut(s) | 256, 306 |
| Cac8I | GCNNGC | 5 cut(s) | 108, 112, 132, 172, 362 |
| CfoI | GCGC | 1 cut(s) | 170 |
| Cfr10I | RCCGGY | 1 cut(s) | 170 |
| Cfr13I | GGNCC | 1 cut(s) | 418 |
| Csp6I | GTAC | 2 cut(s) | 261, 304 |
| CviQI | GTAC | 2 cut(s) | 261, 304 |
| DdeI | CTNAG | 1 cut(s) | 141 |
| DpnI | GATC | 4 cut(s) | 50, 70, 204, 402 |
| DpnII | GATC | 4 cut(s) | 48, 68, 202, 400 |
| Ecl136II | GAGCTC | 1 cut(s) | 364 |
| Eco24I | GRGCYC | 1 cut(s) | 366 |
| Eco31I | GGTCTC | 1 cut(s) | 284 |
| Eco53kI | GAGCTC | 1 cut(s) | 364 |
| EcoICRI | GAGCTC | 1 cut(s) | 364 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 383 |
| EcoRII | CCWGG | 1 cut(s) | 256 |
| EcoT38I | GRGCYC | 1 cut(s) | 366 |
| FaiI | YATR | 8 cut(s) | 66, 270, 272, 297, 315, 336, 353, 374 |
| FaqI | GGGAC | 1 cut(s) | 244 |
| FauI | CCCGC | 1 cut(s) | 67 |
| FauNDI | CATATG | 1 cut(s) | 270 |
| Fnu4HI | GCNGC | 3 cut(s) | 6, 43, 266 |
| FokI | GGATG | 1 cut(s) | 94 |
| FriOI | GRGCYC | 1 cut(s) | 366 |
| Fsp4HI | GCNGC | 3 cut(s) | 6, 43, 266 |
| GlaI | GCGC | 1 cut(s) | 169 |
| GluI | GCNGC | 3 cut(s) | 6, 43, 266 |
| HaeIII | GGCC | 1 cut(s) | 419 |
| HapII | CCGG | 4 cut(s) | 155, 162, 171, 228 |
| HhaI | GCGC | 1 cut(s) | 170 |
| Hin6I | GCGC | 1 cut(s) | 168 |
| HinP1I | GCGC | 1 cut(s) | 168 |
| HindIII | AAGCTT | 1 cut(s) | 112 |
| HpaII | CCGG | 4 cut(s) | 155, 162, 171, 228 |
| Hpy166II | GTNNAC | 1 cut(s) | 306 |
| Hpy188III | TCNNGA | 2 cut(s) | 283, 319 |
| Hpy8I | GTNNAC | 1 cut(s) | 306 |
| HpyAV | CCTTC | 2 cut(s) | 72, 269 |
| HpyCH4III | ACNGT | 1 cut(s) | 357 |
| HpyCH4V | TGCA | 2 cut(s) | 110, 130 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 127, 262, 416 |
| HpyF3I | CTNAG | 1 cut(s) | 141 |
| HspAI | GCGC | 1 cut(s) | 168 |
| KroI | GCCGGC | 1 cut(s) | 170 |
| KroNI | GCCGGC | 1 cut(s) | 172 |
| Kzo9I | GATC | 4 cut(s) | 48, 68, 202, 400 |
| LpnPI | CCDG | 8 cut(s) | 24, 168, 175, 184, 241, 243, 270, 371 |
| Lsp1109I | GCAGC | 2 cut(s) | 17, 277 |
| LweI | GCATC | 2 cut(s) | 183, 336 |
| MalI | GATC | 4 cut(s) | 50, 70, 204, 402 |
| MboI | GATC | 4 cut(s) | 48, 68, 202, 400 |
| MboII | GAAGA | 3 cut(s) | 43, 197, 334 |
| MfeI | CAATTG | 1 cut(s) | 146 |
| MhlI | GDGCHC | 1 cut(s) | 366 |
| MluCI | AATT | 1 cut(s) | 146 |
| MnlI | CCTC | 2 cut(s) | 29, 96 |
| MroNI | GCCGGC | 1 cut(s) | 170 |
| MroXI | GAANNNNTTC | 1 cut(s) | 329 |
| MslI | CAYNNNNRTG | 1 cut(s) | 294 |
| MspI | CCGG | 4 cut(s) | 155, 162, 171, 228 |
| MspR9I | CCNGG | 2 cut(s) | 229, 258 |
| MunI | CAATTG | 1 cut(s) | 146 |
| MvaI | CCWGG | 1 cut(s) | 258 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 127, 262, 416 |
| NaeI | GCCGGC | 1 cut(s) | 172 |
| NciI | CCSGG | 1 cut(s) | 229 |
| NdeI | CATATG | 1 cut(s) | 270 |
| NdeII | GATC | 4 cut(s) | 48, 68, 202, 400 |
| NgoMIV | GCCGGC | 1 cut(s) | 170 |
| PdiI | GCCGGC | 1 cut(s) | 172 |
| PdmI | GAANNNNTTC | 1 cut(s) | 329 |
| PkrI | GCNGC | 3 cut(s) | 7, 44, 267 |
| Psp124BI | GAGCTC | 1 cut(s) | 366 |
| Psp6I | CCWGG | 1 cut(s) | 256 |
| PspGI | CCWGG | 1 cut(s) | 256 |
| PspPI | GGNCC | 1 cut(s) | 418 |
| RsaI | GTAC | 2 cut(s) | 262, 305 |
| RsaNI | GTAC | 2 cut(s) | 261, 304 |
| RseI | CAYNNNNRTG | 1 cut(s) | 294 |
| SacI | GAGCTC | 1 cut(s) | 366 |
| SatI | GCNGC | 3 cut(s) | 6, 43, 266 |
| Sau3AI | GATC | 4 cut(s) | 48, 68, 202, 400 |
| Sau96I | GGNCC | 1 cut(s) | 418 |
| ScrFI | CCNGG | 2 cut(s) | 229, 258 |
| SduI | GDGCHC | 1 cut(s) | 366 |
| SetI | ASST | 9 cut(s) | 101, 116, 183, 193, 200, 280, 303, 366, 381 |
| SfaNI | GCATC | 2 cut(s) | 183, 336 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 294 |
| SmlI | CTYRAG | 1 cut(s) | 100 |
| SmoI | CTYRAG | 1 cut(s) | 100 |
| Sse9I | AATT | 1 cut(s) | 146 |
| SsiI | CCGC | 2 cut(s) | 42, 74 |
| SstI | GAGCTC | 1 cut(s) | 366 |
| StyD4I | CCNGG | 2 cut(s) | 227, 256 |
| TaaI | ACNGT | 1 cut(s) | 357 |
| TaqI | TCGA | 1 cut(s) | 177 |
| TasI | AATT | 1 cut(s) | 146 |
| TatI | WGTACW | 1 cut(s) | 303 |
| TauI | GCSGC | 1 cut(s) | 45 |
| TscAI | CASTG | 2 cut(s) | 256, 313 |
| TseI | GCWGC | 2 cut(s) | 5, 265 |
| TspDTI | ATGAA | 2 cut(s) | 197, 389 |
| TspRI | CASTG | 2 cut(s) | 256, 313 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 383 |
| XmnI | GAANNNNTTC | 1 cut(s) | 329 |