AT5G02550

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0018316
Physical Location & Seq
Reverse (-)
572970 .. 573634
665 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G02550.1

Sequence Viewer

Length: 231 bp
ATGTCGGAGAGACCAAGCCGTCACCAGAGAAGACCTTCTCAGAGCGTTTTTCCGATCTCCCTTGACGATCTCTCCGATATCTCTCTCGCAGCAAATCCTCCTTCCACCGTTCCTACTAACCCGCCACGTCACCAGATCCCTCCGCCGTCTCCTGCAGCTCCTCCGGCTAACCGTAGCAACAATGACGACAATGTTAGCAAAGATCACCATGGGAACGCCTCTTCTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.18

Weight (kDa)

6.9

Isoelectric Point (pI)

89.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02550
fragaria_vesca FvH4_6g14280
pyrus_communis pycom12g13300
rosa_chinensis RchiOBHm_Chr3g0467231
rosa_roxburghii Rroxscaffold_6G00413800
rosa_rugosa Rorug03G0086000
rosa_samantha Rh3AG134400 Rh3BG155700 Rh3CG155300 Rh3DG156500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 18
AciI CCGC 2 cut(s) 122, 143
AclWI GGATC 1 cut(s) 130
AjiI CACGTC 1 cut(s) 128
AluBI AGCT 1 cut(s) 158
AluI AGCT 1 cut(s) 158
Alw26I GTCTC 2 cut(s) 4, 153
AlwI GGATC 1 cut(s) 130
ApeKI GCWGC 2 cut(s) 89, 155
Asp700I GAANNNNTTC 1 cut(s) 34
AsuHPI GGTGA 3 cut(s) 14, 122, 197
BbsI GAAGAC 1 cut(s) 37
BbvI GCAGC 2 cut(s) 101, 167
BceAI ACGGC 2 cut(s) 3, 130
BcoDI GTCTC 2 cut(s) 4, 153
BfmI CTRYAG 1 cut(s) 153
BisI GCNGC 2 cut(s) 90, 156
BlsI GCNGC 2 cut(s) 91, 157
BmgBI CACGTC 1 cut(s) 128
BpiI GAAGAC 1 cut(s) 37
BsaI GGTCTC 1 cut(s) 4
BsaJI CCNNGG 1 cut(s) 208
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
BseDI CCNNGG 1 cut(s) 208
BseMII CTCAG 1 cut(s) 53
BseRI GAGGAG 1 cut(s) 150
BseXI GCAGC 2 cut(s) 101, 167
BsiSI CCGG 1 cut(s) 164
BsmAI GTCTC 2 cut(s) 4, 153
BsmBI CGTCTC 1 cut(s) 153
Bso31I GGTCTC 1 cut(s) 4
Bsp143I GATC 4 cut(s) 54, 67, 135, 202
Bsp19I CCATGG 1 cut(s) 208
BspACI CCGC 2 cut(s) 122, 143
BspCNI CTCAG 1 cut(s) 52
BspMAI CTGCAG 1 cut(s) 157
BspPI GGATC 1 cut(s) 130
BspTNI GGTCTC 1 cut(s) 4
BssECI CCNNGG 1 cut(s) 208
BssMI GATC 4 cut(s) 54, 67, 135, 202
BssT1I CCWWGG 1 cut(s) 208
Bst4CI ACNGT 2 cut(s) 109, 173
Bst6I CTCTTC 1 cut(s) 226
BstDEI CTNAG 1 cut(s) 39
BstDSI CCRYGG 1 cut(s) 208
BstKTI GATC 4 cut(s) 57, 70, 138, 205
BstMAI GTCTC 2 cut(s) 4, 153
BstMBI GATC 4 cut(s) 54, 67, 135, 202
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstSFI CTRYAG 1 cut(s) 153
BstV1I GCAGC 2 cut(s) 101, 167
BstV2I GAAGAC 1 cut(s) 37
BstX2I RGATCY 1 cut(s) 135
BstYI RGATCY 1 cut(s) 135
BtgI CCRYGG 1 cut(s) 208
BtrI CACGTC 1 cut(s) 128
CviAII CATG 1 cut(s) 209
CviJI RGCY 3 cut(s) 18, 158, 167
CviKI_1 RGCY 3 cut(s) 18, 158, 167
DdeI CTNAG 1 cut(s) 39
DpnI GATC 4 cut(s) 56, 69, 137, 204
DpnII GATC 4 cut(s) 54, 67, 135, 202
DrdI GACNNNNNNGTC 1 cut(s) 18
DseDI GACNNNNNNGTC 1 cut(s) 18
Eam1104I CTCTTC 1 cut(s) 226
EarI CTCTTC 1 cut(s) 226
EciI GGCGGA 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 208
Eco31I GGTCTC 1 cut(s) 4
Eco32I GATATC 1 cut(s) 79
EcoRV GATATC 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 208
Esp3I CGTCTC 1 cut(s) 153
FaeI CATG 1 cut(s) 212
FaiI YATR 1 cut(s) 210
FatI CATG 1 cut(s) 208
FauI CCCGC 1 cut(s) 129
Fnu4HI GCNGC 2 cut(s) 90, 156
Fsp4HI GCNGC 2 cut(s) 90, 156
GluI GCNGC 2 cut(s) 90, 156
HapII CCGG 1 cut(s) 164
Hin1II CATG 1 cut(s) 212
HpaII CCGG 1 cut(s) 164
HphI GGTGA 3 cut(s) 14, 122, 197
Hpy188I TCNGA 4 cut(s) 7, 42, 54, 76
HpyAV CCTTC 2 cut(s) 45, 111
HpyCH4III ACNGT 2 cut(s) 109, 173
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 1 cut(s) 155
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 1 cut(s) 39
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 1 cut(s) 212
Kzo9I GATC 4 cut(s) 54, 67, 135, 202
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 4 cut(s) 38, 146, 165, 177
Lsp1109I GCAGC 2 cut(s) 101, 167
MaeII ACGT 1 cut(s) 127
MaeIII GTNAC 2 cut(s) 20, 128
MalI GATC 4 cut(s) 56, 69, 137, 204
MboI GATC 4 cut(s) 54, 67, 135, 202
MboII GAAGA 2 cut(s) 42, 213
MflI RGATCY 1 cut(s) 135
MluCI AATT 1 cut(s) 226
MnlI CCTC 4 cut(s) 108, 150, 171, 229
MroXI GAANNNNTTC 1 cut(s) 34
MseI TTAA 1 cut(s) 229
MspI CCGG 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 164
NcoI CCATGG 1 cut(s) 208
NdeII GATC 4 cut(s) 54, 67, 135, 202
NlaIII CATG 1 cut(s) 212
NmuCI GTSAC 2 cut(s) 20, 128
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PdmI GAANNNNTTC 1 cut(s) 34
PkrI GCNGC 2 cut(s) 91, 157
PstI CTGCAG 1 cut(s) 157
PsuI RGATCY 1 cut(s) 135
SaqAI TTAA 1 cut(s) 229
SatI GCNGC 2 cut(s) 90, 156
Sau3AI GATC 4 cut(s) 54, 67, 135, 202
SetI ASST 3 cut(s) 37, 130, 160
SfcI CTRYAG 1 cut(s) 153
Sse9I AATT 1 cut(s) 226
SsiI CCGC 2 cut(s) 122, 143
StyI CCWWGG 1 cut(s) 208
TaaI ACNGT 2 cut(s) 109, 173
TaiI ACGT 1 cut(s) 130
TasI AATT 1 cut(s) 226
Tru1I TTAA 1 cut(s) 229
Tru9I TTAA 1 cut(s) 229
TseFI GTSAC 2 cut(s) 20, 128
TseI GCWGC 2 cut(s) 89, 155
Tsp45I GTSAC 2 cut(s) 20, 128
XmnI GAANNNNTTC 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.