Rh3DG156500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0018316
Physical Location & Seq
Reverse (-)
13460881 .. 13462036
1156 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG156500.1

Sequence Viewer

Length: 294 bp
ATGTCTCAGAGGCCAAATCGCCACCAGAGAAGGCCATCCCAGAGCATGTTCATGTCCCCCGACTTCCTCCTATCCGAAGATGCCGTGGTCGGAGACAAGGTGGCTGCTGCTGCAGGAGGTGCACCAACTAACCAGGCTCCGCCATCGCAGCTGATCTCTCCTCCTCTCCCGCCGACCGCGGAGGCAGCGAAAACCAGCTCCGAGAATGCCAAGGAGAACAAGACAACAACCATAGACGCAGTATTGTACCAACTTTTCTACTACGTTGAACCATATGAATGTATTATGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.58

Weight (kDa)

5.21

Isoelectric Point (pI)

80.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02550
fragaria_vesca FvH4_6g14280
pyrus_communis pycom12g13300
rosa_chinensis RchiOBHm_Chr3g0467231
rosa_roxburghii Rroxscaffold_6G00413800
rosa_rugosa Rorug03G0086000
rosa_samantha Rh3AG134400 Rh3BG155700 Rh3CG155300 Rh3DG156500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 179
AciI CCGC 4 cut(s) 140, 170, 177, 179
AfaI GTAC 1 cut(s) 248
AgsI TTSAA 1 cut(s) 269
AjnI CCWGG 1 cut(s) 132
AluBI AGCT 2 cut(s) 151, 198
AluI AGCT 2 cut(s) 151, 198
Alw21I GWGCWC 1 cut(s) 124
Alw26I GTCTC 2 cut(s) 9, 87
Alw44I GTGCAC 1 cut(s) 120
AoxI GGCC 2 cut(s) 11, 32
ApaLI GTGCAC 1 cut(s) 120
ApeKI GCWGC 5 cut(s) 104, 107, 110, 148, 185
BaeGI GKGCMC 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 124
BbvI GCAGC 5 cut(s) 91, 94, 97, 160, 197
BccI CCATC 2 cut(s) 43, 151
BceAI ACGGC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 134
BcoDI GTCTC 2 cut(s) 9, 87
BfmI CTRYAG 1 cut(s) 111
BisI GCNGC 5 cut(s) 105, 108, 111, 149, 186
BlsI GCNGC 5 cut(s) 106, 109, 112, 150, 187
Bme1390I CCNGG 1 cut(s) 134
BmiI GGNNCC 1 cut(s) 138
BmrFI CCNGG 1 cut(s) 134
BmsI GCATC 1 cut(s) 70
BsaJI CCNNGG 3 cut(s) 84, 177, 210
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
BseBI CCWGG 1 cut(s) 134
BseDI CCNNGG 3 cut(s) 84, 177, 210
BseGI GGATG 1 cut(s) 35
BseMII CTCAG 1 cut(s) 20
BseRI GAGGAG 2 cut(s) 150, 153
BseSI GKGCMC 1 cut(s) 124
BseXI GCAGC 5 cut(s) 91, 94, 97, 160, 197
Bsh1236I CGCG 1 cut(s) 179
Bsh1285I CGRYCG 1 cut(s) 177
BshFI GGCC 2 cut(s) 13, 34
BsiEI CGRYCG 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 124
BslFI GGGAC 1 cut(s) 40
BsmAI GTCTC 2 cut(s) 9, 87
BsmFI GGGAC 1 cut(s) 40
BsmI GAATGC 1 cut(s) 211
BsnI GGCC 2 cut(s) 13, 34
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 1 cut(s) 153
BspACI CCGC 4 cut(s) 140, 170, 177, 179
BspANI GGCC 2 cut(s) 13, 34
BspCNI CTCAG 1 cut(s) 19
BspFNI CGCG 1 cut(s) 179
BspLI GGNNCC 1 cut(s) 138
BspMAI CTGCAG 1 cut(s) 115
BssECI CCNNGG 3 cut(s) 84, 177, 210
BssMI GATC 1 cut(s) 153
BssT1I CCWWGG 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 134
BstAPI GCANNNNNTGC 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 6
BstDSI CCRYGG 2 cut(s) 84, 177
BstF5I GGATG 1 cut(s) 35
BstFNI CGCG 1 cut(s) 179
BstKTI GATC 1 cut(s) 156
BstMAI GTCTC 2 cut(s) 9, 87
BstMBI GATC 1 cut(s) 153
BstMCI CGRYCG 1 cut(s) 177
BstMWI GCNNNNNNNGC 4 cut(s) 110, 119, 148, 185
BstNI CCWGG 1 cut(s) 134
BstNSI RCATGY 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 132
BstSFI CTRYAG 1 cut(s) 111
BstSLI GKGCMC 1 cut(s) 124
BstUI CGCG 1 cut(s) 179
BstV1I GCAGC 5 cut(s) 91, 94, 97, 160, 197
BsuRI GGCC 2 cut(s) 13, 34
BtgI CCRYGG 2 cut(s) 84, 177
BtgZI GCGATG 1 cut(s) 129
BtsCI GGATG 1 cut(s) 35
Cfr42I CCGCGG 1 cut(s) 180
CseI GACGC 1 cut(s) 245
Csp6I GTAC 1 cut(s) 247
CviAII CATG 2 cut(s) 46, 52
CviJI RGCY 6 cut(s) 13, 34, 104, 137, 151, 198
CviKI_1 RGCY 6 cut(s) 13, 34, 104, 137, 151, 198
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 1 cut(s) 6
DpnI GATC 1 cut(s) 155
DpnII GATC 1 cut(s) 153
EciI GGCGGA 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 210
EcoRII CCWGG 1 cut(s) 132
EcoT14I CCWWGG 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 2 cut(s) 49, 55
FaiI YATR 6 cut(s) 47, 53, 233, 274, 276, 287
FaqI GGGAC 1 cut(s) 40
FatI CATG 2 cut(s) 45, 51
FauI CCCGC 1 cut(s) 177
FauNDI CATATG 1 cut(s) 274
Fnu4HI GCNGC 5 cut(s) 105, 108, 111, 149, 186
FokI GGATG 1 cut(s) 22
Fsp4HI GCNGC 5 cut(s) 105, 108, 111, 149, 186
GluI GCNGC 5 cut(s) 105, 108, 111, 149, 186
HaeIII GGCC 2 cut(s) 13, 34
HgaI GACGC 1 cut(s) 245
Hin1II CATG 2 cut(s) 49, 55
Hpy166II GTNNAC 1 cut(s) 122
Hpy188I TCNGA 4 cut(s) 9, 76, 92, 202
Hpy8I GTNNAC 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 24
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 2 cut(s) 113, 122
HpyF10VI GCNNNNNNNGC 4 cut(s) 110, 119, 148, 185
HpyF3I CTNAG 1 cut(s) 6
HpySE526I ACGT 1 cut(s) 264
Hsp92II CATG 2 cut(s) 49, 55
KspI CCGCGG 1 cut(s) 180
Kzo9I GATC 1 cut(s) 153
LmnI GCTCC 2 cut(s) 142, 203
LpnPI CCDG 6 cut(s) 38, 53, 99, 119, 146, 208
Lsp1109I GCAGC 5 cut(s) 91, 94, 97, 160, 197
LweI GCATC 1 cut(s) 70
MaeII ACGT 1 cut(s) 264
MalI GATC 1 cut(s) 155
MboI GATC 1 cut(s) 153
MboII GAAGA 1 cut(s) 89
MhlI GDGCHC 1 cut(s) 124
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 6 cut(s) 3, 77, 110, 171, 174, 175
MseI TTAA 1 cut(s) 292
MslI CAYNNNNRTG 2 cut(s) 50, 277
MspA1I CMGCKG 2 cut(s) 151, 179
MspR9I CCNGG 1 cut(s) 134
Mva1269I GAATGC 1 cut(s) 211
MvaI CCWGG 1 cut(s) 134
MvnI CGCG 1 cut(s) 179
MwoI GCNNNNNNNGC 4 cut(s) 110, 119, 148, 185
NdeI CATATG 1 cut(s) 274
NdeII GATC 1 cut(s) 153
NlaIII CATG 2 cut(s) 49, 55
NlaIV GGNNCC 1 cut(s) 138
NspI RCATGY 1 cut(s) 49
PctI GAATGC 1 cut(s) 211
PkrI GCNGC 5 cut(s) 106, 109, 112, 150, 187
Psp6I CCWGG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 138
PstI CTGCAG 1 cut(s) 115
PvuII CAGCTG 1 cut(s) 151
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 2 cut(s) 50, 277
SacII CCGCGG 1 cut(s) 180
SaqAI TTAA 1 cut(s) 292
SatI GCNGC 5 cut(s) 105, 108, 111, 149, 186
Sau3AI GATC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 134
SduI GDGCHC 1 cut(s) 124
SetI ASST 5 cut(s) 102, 121, 153, 200, 267
SfaNI GCATC 1 cut(s) 70
SfcI CTRYAG 1 cut(s) 111
Sfr303I CCGCGG 1 cut(s) 180
SgrBI CCGCGG 1 cut(s) 180
SmiMI CAYNNNNRTG 2 cut(s) 50, 277
SsiI CCGC 4 cut(s) 140, 170, 177, 179
StyD4I CCNGG 1 cut(s) 132
StyI CCWWGG 1 cut(s) 210
TaiI ACGT 1 cut(s) 267
Tru1I TTAA 1 cut(s) 292
Tru9I TTAA 1 cut(s) 292
TseI GCWGC 5 cut(s) 104, 107, 110, 148, 185
TspDTI ATGAA 2 cut(s) 40, 291
VneI GTGCAC 1 cut(s) 120
XceI RCATGY 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.