Rorug03G0086000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0018316
Physical Location & Seq
Reverse (-)
6650031 .. 6651029
999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0086000.1

Sequence Viewer

Length: 999 bp
ATGTCTGCTTTAAATAGAGCAAAGTCTCTTCAGGGCAAGAGCAAACCAGAAAGGCCATTCCTTCATTCCCTTCTTCCCAGTTTGCAACATTTTCATCTTTTCTTTCTAGCCATGACTAGAAAGAAGGTGAAACTTACCTACATCACTAATGATAGTGCTCGAAAAGCAACATATAAGAAAAGGAAGAAGGGTCTCATGAAAAAGGTGAGTGAACTCACCACCCTTTGTGACATTGATGCTTGTGCTATTATCTACAGCCCCTATGACTCCCAGCCTGAAATTTGGCCTTCCCCCTTGGGAGTCCAACGTGTGCTTGCGCAGTTCAAGACCATGCCTGAAATGGAGCAAAGCAAGAAGATGGTGAATCAGGAGACTTTCCTGAGGCAAAGAATCAACAAGGCTCAGGAACAGCTTAAAAAGCAAAAGAAAGACAATCGGGAAAAGGAGATGGCTCGTGTGCTGTTCCAAAGCCTAACCGGAAAGTCCCTCCAGGGCTTGACACTGTCAGACCTGACTGATCTCGGCTGGGTCATTGACCAACACCTGAAGGAGTTACATCTCAGGATGAAGAACATTAAGGAGGAGGCTGTGAAGAGCCAGAACCAAGTGCAAGGAGCACAAGGGGTGTCAGCTGCTGCAACGGAACATAGAATGGCAGCGATGAAGAGTAATGGAGAGGGCAGCAGCAGCAACATGGCGATGAAGAATGGTGAAGAGGGCAGCAACATGCAGCATGCATCCCTTAACAGGCAAGTTTTTGATCACATGCATAACATGGAGGCAATGCAGCTCCAAATGATTCAGATGGCAGCTCATAAGCAGCAGAACCCTTGGTTCATGGACATGATGAATGCGCCACCACCAACACCACTGCCACATCCAGATCATCATCAGCATATGGGGTTTACCGGGGAGGACATGATGCTTCCTTTCGCGGATCATAACCACAACATTATGTGGCCAAATCCTCCTCCTGCTGGCGGCTTTAATTTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

332

Amino Acids

37.88

Weight (kDa)

9.58

Isoelectric Point (pI)

52.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 47 - 88 1.1e-17 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02550
fragaria_vesca FvH4_6g14280
pyrus_communis pycom12g13300
rosa_chinensis RchiOBHm_Chr3g0467231
rosa_roxburghii Rroxscaffold_6G00413800
rosa_rugosa Rorug03G0086000
rosa_samantha Rh3AG134400 Rh3BG155700 Rh3CG155300 Rh3DG156500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 318
AccII CGCG 1 cut(s) 935
AciI CCGC 2 cut(s) 935, 981
AclWI GGATC 1 cut(s) 945
AcoI YGGCCR 1 cut(s) 959
AcsI RAATTY 1 cut(s) 279
AcuI CTGAAG 2 cut(s) 14, 566
AfiI CCNNNNNNNGG 3 cut(s) 747, 977, 980
AflIII ACRYGT 1 cut(s) 307
AgsI TTSAA 1 cut(s) 325
AjnI CCWGG 1 cut(s) 489
AluBI AGCT 4 cut(s) 412, 632, 790, 812
AluI AGCT 4 cut(s) 412, 632, 790, 812
Alw21I GWGCWC 2 cut(s) 160, 619
Alw26I GTCTC 3 cut(s) 30, 197, 365
AlwI GGATC 1 cut(s) 945
AlwNI CAGNNNCTG 1 cut(s) 635
AoxI GGCC 3 cut(s) 53, 284, 959
ApoI RAATTY 1 cut(s) 279
AspLEI GCGC 2 cut(s) 319, 856
AsuC2I CCSGG 1 cut(s) 910
AsuHPI GGTGA 5 cut(s) 139, 208, 217, 373, 722
AxyI CCTNAGG 1 cut(s) 380
BalI TGGCCA 1 cut(s) 961
BauI CACGAG 1 cut(s) 453
Bbv12I GWGCWC 2 cut(s) 160, 619
BccI CCATC 3 cut(s) 352, 442, 799
BciT130I CCWGG 1 cut(s) 491
BclI TGATCA 1 cut(s) 760
BcnI CCSGG 1 cut(s) 910
BcoDI GTCTC 3 cut(s) 30, 197, 365
BfaI CTAG 2 cut(s) 107, 117
BfmI CTRYAG 1 cut(s) 253
Bme1390I CCNGG 2 cut(s) 491, 910
BmrFI CCNGG 2 cut(s) 491, 910
BmrI ACTGGG 1 cut(s) 72
BmsI GCATC 3 cut(s) 226, 746, 912
BmuI ACTGGG 1 cut(s) 72
BpmI CTGGAG 1 cut(s) 473
Bpu10I CCTNAGC 1 cut(s) 402
BpuMI CCSGG 1 cut(s) 910
BsaBI GATNNNNATC 1 cut(s) 888
BsaI GGTCTC 1 cut(s) 197
BsaJI CCNNGG 4 cut(s) 294, 490, 830, 909
BsaWI WCCGGW 1 cut(s) 476
Bsc4I CCNNNNNNNGG 3 cut(s) 747, 977, 980
Bse1I ACTGG 1 cut(s) 78
Bse21I CCTNAGG 1 cut(s) 380
Bse3DI GCAATG 1 cut(s) 789
Bse8I GATNNNNATC 1 cut(s) 888
BseBI CCWGG 1 cut(s) 491
BseDI CCNNGG 4 cut(s) 294, 490, 830, 909
BseGI GGATG 3 cut(s) 570, 737, 877
BseJI GATNNNNATC 1 cut(s) 888
BseLI CCNNNNNNNGG 3 cut(s) 747, 977, 980
BseMI GCAATG 1 cut(s) 789
BseMII CTCAG 3 cut(s) 371, 416, 574
BseNI ACTGG 1 cut(s) 78
BseRI GAGGAG 2 cut(s) 596, 960
BseYI CCCAGC 2 cut(s) 270, 525
Bsh1236I CGCG 1 cut(s) 935
BshFI GGCC 3 cut(s) 55, 286, 961
BsiHKAI GWGCWC 2 cut(s) 160, 619
BsiSI CCGG 2 cut(s) 477, 909
BslFI GGGAC 1 cut(s) 469
BslI CCNNNNNNNGG 3 cut(s) 747, 977, 980
BsmAI GTCTC 3 cut(s) 30, 197, 365
BsmFI GGGAC 1 cut(s) 469
BsmI GAATGC 1 cut(s) 856
BsnI GGCC 3 cut(s) 55, 286, 961
Bso31I GGTCTC 1 cut(s) 197
Bsp1286I GDGCHC 2 cut(s) 160, 619
Bsp143I GATC 4 cut(s) 517, 760, 883, 937
BspACI CCGC 2 cut(s) 935, 981
BspANI GGCC 3 cut(s) 55, 286, 961
BspCNI CTCAG 3 cut(s) 372, 415, 573
BspFNI CGCG 1 cut(s) 935
BspHI TCATGA 1 cut(s) 195
BspPI GGATC 1 cut(s) 945
BspQI GCTCTTC 1 cut(s) 587
BspTNI GGTCTC 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 789
BsrI ACTGG 1 cut(s) 78
BssECI CCNNGG 4 cut(s) 294, 490, 830, 909
BssMI GATC 4 cut(s) 517, 760, 883, 937
BssSI CACGAG 1 cut(s) 453
BssT1I CCWWGG 2 cut(s) 294, 830
Bst2BI CACGAG 1 cut(s) 453
Bst2UI CCWGG 1 cut(s) 491
Bst4CI ACNGT 1 cut(s) 504
Bst6I CTCTTC 4 cut(s) 33, 587, 659, 708
BstC8I GCNNGC 3 cut(s) 315, 735, 979
BstDEI CTNAG 3 cut(s) 380, 402, 560
BstF5I GGATG 3 cut(s) 570, 737, 877
BstFNI CGCG 1 cut(s) 935
BstHHI GCGC 2 cut(s) 319, 856
BstKTI GATC 4 cut(s) 520, 763, 886, 940
BstMAI GTCTC 3 cut(s) 30, 197, 365
BstMBI GATC 4 cut(s) 517, 760, 883, 937
BstMWI GCNNNNNNNGC 3 cut(s) 164, 418, 687
BstNI CCWGG 1 cut(s) 491
BstNSI RCATGY 3 cut(s) 730, 737, 769
BstSCI CCNGG 2 cut(s) 489, 908
BstSFI CTRYAG 1 cut(s) 253
BstUI CGCG 1 cut(s) 935
Bsu36I CCTNAGG 1 cut(s) 380
BsuRI GGCC 3 cut(s) 55, 286, 961
BtgZI GCGATG 2 cut(s) 674, 713
BtsCI GGATG 3 cut(s) 570, 737, 877
BtsI GCAGTG 1 cut(s) 869
BtsIMutI CAGTG 2 cut(s) 500, 869
Cac8I GCNNGC 3 cut(s) 315, 735, 979
CaiI CAGNNNCTG 1 cut(s) 635
CciI TCATGA 1 cut(s) 195
CfoI GCGC 2 cut(s) 319, 856
DdeI CTNAG 3 cut(s) 380, 402, 560
DpnI GATC 4 cut(s) 519, 762, 885, 939
DpnII GATC 4 cut(s) 517, 760, 883, 937
DraI TTTAAA 1 cut(s) 12
EaeI YGGCCR 1 cut(s) 959
Eam1104I CTCTTC 4 cut(s) 33, 587, 659, 708
EarI CTCTTC 4 cut(s) 33, 587, 659, 708
Eco130I CCWWGG 2 cut(s) 294, 830
Eco31I GGTCTC 1 cut(s) 197
Eco57I CTGAAG 2 cut(s) 14, 566
Eco81I CCTNAGG 1 cut(s) 380
EcoRII CCWGG 1 cut(s) 489
EcoT14I CCWWGG 2 cut(s) 294, 830
EcoT22I ATGCAT 2 cut(s) 739, 771
ErhI CCWWGG 2 cut(s) 294, 830
FaqI GGGAC 1 cut(s) 469
FauNDI CATATG 1 cut(s) 897
FbaI TGATCA 1 cut(s) 760
FokI GGATG 3 cut(s) 577, 724, 864
FspBI CTAG 2 cut(s) 107, 117
FspI TGCGCA 1 cut(s) 318
GlaI GCGC 2 cut(s) 318, 855
GsaI CCCAGC 2 cut(s) 274, 529
GsuI CTGGAG 1 cut(s) 473
HaeIII GGCC 3 cut(s) 55, 286, 961
HapII CCGG 2 cut(s) 477, 909
HhaI GCGC 2 cut(s) 319, 856
Hin6I GCGC 2 cut(s) 317, 854
HinP1I GCGC 2 cut(s) 317, 854
HinfI GANTC 5 cut(s) 266, 300, 364, 390, 799
HpaII CCGG 2 cut(s) 477, 909
HphI GGTGA 5 cut(s) 139, 208, 217, 373, 722
Hpy166II GTNNAC 2 cut(s) 212, 906
Hpy188I TCNGA 2 cut(s) 508, 804
Hpy188III TCNNGA 8 cut(s) 196, 325, 368, 379, 404, 437, 562, 881
Hpy8I GTNNAC 2 cut(s) 212, 906
HpyAV CCTTC 6 cut(s) 71, 80, 118, 181, 297, 541
HpyCH4III ACNGT 1 cut(s) 504
HpyCH4IV ACGT 1 cut(s) 307
HpyCH4V TGCA 7 cut(s) 85, 610, 638, 730, 737, 769, 787
HpyF10VI GCNNNNNNNGC 3 cut(s) 164, 418, 687
HpyF3I CTNAG 3 cut(s) 380, 402, 560
HpySE526I ACGT 1 cut(s) 307
HspAI GCGC 2 cut(s) 317, 854
Ksp22I TGATCA 1 cut(s) 760
Kzo9I GATC 4 cut(s) 517, 760, 883, 937
LguI GCTCTTC 1 cut(s) 587
LmnI GCTCC 3 cut(s) 343, 614, 795
LweI GCATC 3 cut(s) 226, 746, 912
MaeI CTAG 2 cut(s) 107, 117
MaeII ACGT 1 cut(s) 307
MaeIII GTNAC 2 cut(s) 227, 552
MalI GATC 4 cut(s) 519, 762, 885, 939
MboI GATC 4 cut(s) 517, 760, 883, 937
MboII GAAGA 9 cut(s) 20, 65, 196, 367, 580, 604, 676, 715, 725
MhlI GDGCHC 2 cut(s) 160, 619
MlsI TGGCCA 1 cut(s) 961
MluCI AATT 2 cut(s) 279, 988
MluNI TGGCCA 1 cut(s) 961
MlyI GAGTC 2 cut(s) 260, 309
MmeI TCCRAC 1 cut(s) 328
Mox20I TGGCCA 1 cut(s) 961
Mph1103I ATGCAT 2 cut(s) 739, 771
MscI TGGCCA 1 cut(s) 961
MseI TTAA 5 cut(s) 11, 414, 576, 744, 987
MslI CAYNNNNRTG 2 cut(s) 698, 842
Msp20I TGGCCA 1 cut(s) 961
MspA1I CMGCKG 1 cut(s) 632
MspI CCGG 2 cut(s) 477, 909
MspR9I CCNGG 2 cut(s) 491, 910
Mva1269I GAATGC 1 cut(s) 856
MvaI CCWGG 1 cut(s) 491
MvnI CGCG 1 cut(s) 935
MwoI GCNNNNNNNGC 3 cut(s) 164, 418, 687
NciI CCSGG 1 cut(s) 910
NdeI CATATG 1 cut(s) 897
NdeII GATC 4 cut(s) 517, 760, 883, 937
NmeAIII GCCGAG 1 cut(s) 501
NmuCI GTSAC 1 cut(s) 227
NsbI TGCGCA 1 cut(s) 318
NsiI ATGCAT 2 cut(s) 739, 771
NspI RCATGY 3 cut(s) 730, 737, 769
PaeI GCATGC 1 cut(s) 737
PagI TCATGA 1 cut(s) 195
PciSI GCTCTTC 1 cut(s) 587
PctI GAATGC 1 cut(s) 856
PfeI GAWTC 3 cut(s) 364, 390, 799
PflFI GACNNNGTC 1 cut(s) 502
PleI GAGTC 2 cut(s) 260, 308
PpsI GAGTC 2 cut(s) 260, 308
Psp6I CCWGG 1 cut(s) 489
PspFI CCCAGC 2 cut(s) 270, 525
PspGI CCWGG 1 cut(s) 489
PstNI CAGNNNCTG 1 cut(s) 635
PsyI GACNNNGTC 1 cut(s) 502
PvuII CAGCTG 1 cut(s) 632
RseI CAYNNNNRTG 2 cut(s) 698, 842
SapI GCTCTTC 1 cut(s) 587
SaqAI TTAA 5 cut(s) 11, 414, 576, 744, 987
Sau3AI GATC 4 cut(s) 517, 760, 883, 937
SchI GAGTC 2 cut(s) 260, 309
ScrFI CCNGG 2 cut(s) 491, 910
SduI GDGCHC 2 cut(s) 160, 619
SfaNI GCATC 3 cut(s) 226, 746, 912
SfcI CTRYAG 1 cut(s) 253
SmiMI CAYNNNNRTG 2 cut(s) 698, 842
SphI GCATGC 1 cut(s) 737
Sse9I AATT 2 cut(s) 279, 988
SsiI CCGC 2 cut(s) 935, 981
SspMI CTAG 2 cut(s) 107, 117
StyD4I CCNGG 2 cut(s) 489, 908
StyI CCWWGG 2 cut(s) 294, 830
TaaI ACNGT 1 cut(s) 504
TaiI ACGT 1 cut(s) 310
TaqI TCGA 1 cut(s) 160
TasI AATT 2 cut(s) 279, 988
TauI GCSGC 1 cut(s) 984
TfiI GAWTC 3 cut(s) 364, 390, 799
Tru1I TTAA 5 cut(s) 11, 414, 576, 744, 987
Tru9I TTAA 5 cut(s) 11, 414, 576, 744, 987
TscAI CASTG 2 cut(s) 507, 876
TseFI GTSAC 1 cut(s) 227
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 8 cut(s) 53, 83, 212, 581, 677, 716, 826, 863
TspGWI ACGGA 1 cut(s) 656
TspRI CASTG 2 cut(s) 507, 876
Tth111I GACNNNGTC 1 cut(s) 502
XapI RAATTY 1 cut(s) 279
XceI RCATGY 3 cut(s) 730, 737, 769
XcmI CCANNNNNNNNNTGG 1 cut(s) 337
XspI CTAG 2 cut(s) 107, 117
Zsp2I ATGCAT 2 cut(s) 739, 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.