Rh3AG134400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0018316
Physical Location & Seq
Reverse (-)
11653983 .. 11657942
3960 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG134400.1

Sequence Viewer

Length: 336 bp
ATGTCTCAGAGGCCAAATCGCCACCAGAGAAGGCCATCCCAGAGCATGTTCATGTCCCCCGACTTCCTCCTATCCGAAGATGCCGTGGTCGGAGACAAGGTGGCTGCTGCTGCAGGAGGTGCACCAACTAACCAGGCTCCGCCATCGCAGCTGATCTCTCCTCCTCTCCCGCCGACCGCGGAGGCAGCGAAAACCAGCTCCGTGAATGCCAAGGAGAAAAAGACAACAACCATAGACGCAAAGAGGAGAGATGTCTGCGTTGACCTCAGACCTAGGCGGCTCCAAATCTACGAACTGCCAAGTCGAAGTCGAAGTCATTCCATCGGGTGGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.13

Weight (kDa)

10.34

Isoelectric Point (pI)

89.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02550
fragaria_vesca FvH4_6g14280
pyrus_communis pycom12g13300
rosa_chinensis RchiOBHm_Chr3g0467231
rosa_roxburghii Rroxscaffold_6G00413800
rosa_rugosa Rorug03G0086000
rosa_samantha Rh3AG134400 Rh3BG155700 Rh3CG155300 Rh3DG156500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 327
AccII CGCG 1 cut(s) 179
AciI CCGC 5 cut(s) 140, 170, 177, 179, 277
AfiI CCNNNNNNNGG 1 cut(s) 327
AjnI CCWGG 1 cut(s) 132
AluBI AGCT 2 cut(s) 151, 198
AluI AGCT 2 cut(s) 151, 198
Alw21I GWGCWC 1 cut(s) 124
Alw26I GTCTC 2 cut(s) 9, 87
Alw44I GTGCAC 1 cut(s) 120
AoxI GGCC 2 cut(s) 11, 32
ApaLI GTGCAC 1 cut(s) 120
ApeKI GCWGC 5 cut(s) 104, 107, 110, 148, 185
ArsI GACNNNNNNTTYG 2 cut(s) 298, 330
Asp700I GAANNNNTTC 1 cut(s) 316
AspA2I CCTAGG 1 cut(s) 272
AvrII CCTAGG 1 cut(s) 272
BaeGI GKGCMC 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 124
BbvI GCAGC 5 cut(s) 91, 94, 97, 160, 197
BccI CCATC 3 cut(s) 43, 151, 329
BceAI ACGGC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 134
BcoDI GTCTC 2 cut(s) 9, 87
BfaI CTAG 1 cut(s) 273
BfmI CTRYAG 1 cut(s) 111
BisI GCNGC 6 cut(s) 105, 108, 111, 149, 186, 278
BlnI CCTAGG 1 cut(s) 272
BlsI GCNGC 6 cut(s) 106, 109, 112, 150, 187, 279
Bme1390I CCNGG 1 cut(s) 134
BmiI GGNNCC 2 cut(s) 138, 281
BmrFI CCNGG 1 cut(s) 134
BmsI GCATC 1 cut(s) 70
BsaJI CCNNGG 4 cut(s) 84, 177, 210, 272
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 1 cut(s) 327
BseBI CCWGG 1 cut(s) 134
BseDI CCNNGG 4 cut(s) 84, 177, 210, 272
BseGI GGATG 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 327
BseMII CTCAG 2 cut(s) 20, 280
BseRI GAGGAG 3 cut(s) 150, 153, 259
BseSI GKGCMC 1 cut(s) 124
BseXI GCAGC 5 cut(s) 91, 94, 97, 160, 197
Bsh1236I CGCG 1 cut(s) 179
Bsh1285I CGRYCG 1 cut(s) 177
BshFI GGCC 2 cut(s) 13, 34
BsiEI CGRYCG 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 124
BslFI GGGAC 1 cut(s) 40
BslI CCNNNNNNNGG 1 cut(s) 327
BsmAI GTCTC 2 cut(s) 9, 87
BsmFI GGGAC 1 cut(s) 40
BsmI GAATGC 1 cut(s) 211
BsnI GGCC 2 cut(s) 13, 34
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 1 cut(s) 153
BspACI CCGC 5 cut(s) 140, 170, 177, 179, 277
BspANI GGCC 2 cut(s) 13, 34
BspCNI CTCAG 2 cut(s) 19, 279
BspFNI CGCG 1 cut(s) 179
BspLI GGNNCC 2 cut(s) 138, 281
BspMAI CTGCAG 1 cut(s) 115
BssECI CCNNGG 4 cut(s) 84, 177, 210, 272
BssMI GATC 1 cut(s) 153
BssT1I CCWWGG 2 cut(s) 210, 272
Bst2UI CCWGG 1 cut(s) 134
BstAPI GCANNNNNTGC 1 cut(s) 119
BstDEI CTNAG 2 cut(s) 6, 266
BstDSI CCRYGG 2 cut(s) 84, 177
BstF5I GGATG 1 cut(s) 35
BstFNI CGCG 1 cut(s) 179
BstKTI GATC 1 cut(s) 156
BstMAI GTCTC 2 cut(s) 9, 87
BstMBI GATC 1 cut(s) 153
BstMCI CGRYCG 1 cut(s) 177
BstMWI GCNNNNNNNGC 4 cut(s) 110, 119, 148, 185
BstNI CCWGG 1 cut(s) 134
BstNSI RCATGY 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 132
BstSFI CTRYAG 1 cut(s) 111
BstSLI GKGCMC 1 cut(s) 124
BstUI CGCG 1 cut(s) 179
BstV1I GCAGC 5 cut(s) 91, 94, 97, 160, 197
BsuRI GGCC 2 cut(s) 13, 34
BtgI CCRYGG 2 cut(s) 84, 177
BtgZI GCGATG 1 cut(s) 129
BtsCI GGATG 1 cut(s) 35
Cfr42I CCGCGG 1 cut(s) 180
CseI GACGC 1 cut(s) 245
CviAII CATG 2 cut(s) 46, 52
CviJI RGCY 8 cut(s) 13, 34, 104, 137, 151, 198, 280, 332
CviKI_1 RGCY 8 cut(s) 13, 34, 104, 137, 151, 198, 280, 332
DdeI CTNAG 2 cut(s) 6, 266
DpnI GATC 1 cut(s) 155
DpnII GATC 1 cut(s) 153
EciI GGCGGA 1 cut(s) 129
Eco130I CCWWGG 2 cut(s) 210, 272
EcoRII CCWGG 1 cut(s) 132
EcoT14I CCWWGG 2 cut(s) 210, 272
ErhI CCWWGG 2 cut(s) 210, 272
FaeI CATG 2 cut(s) 49, 55
FaiI YATR 3 cut(s) 47, 53, 233
FaqI GGGAC 1 cut(s) 40
FatI CATG 2 cut(s) 45, 51
FauI CCCGC 1 cut(s) 177
Fnu4HI GCNGC 6 cut(s) 105, 108, 111, 149, 186, 278
FokI GGATG 1 cut(s) 22
Fsp4HI GCNGC 6 cut(s) 105, 108, 111, 149, 186, 278
FspBI CTAG 1 cut(s) 273
GluI GCNGC 6 cut(s) 105, 108, 111, 149, 186, 278
HaeIII GGCC 2 cut(s) 13, 34
HgaI GACGC 1 cut(s) 245
Hin1II CATG 2 cut(s) 49, 55
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
Hpy166II GTNNAC 2 cut(s) 122, 262
Hpy188I TCNGA 4 cut(s) 9, 76, 92, 269
Hpy8I GTNNAC 2 cut(s) 122, 262
HpyAV CCTTC 1 cut(s) 24
HpyCH4V TGCA 2 cut(s) 113, 122
HpyF10VI GCNNNNNNNGC 4 cut(s) 110, 119, 148, 185
HpyF3I CTNAG 2 cut(s) 6, 266
Hsp92II CATG 2 cut(s) 49, 55
KspI CCGCGG 1 cut(s) 180
Kzo9I GATC 1 cut(s) 153
LmnI GCTCC 3 cut(s) 142, 203, 285
LpnPI CCDG 6 cut(s) 38, 53, 99, 119, 146, 208
Lsp1109I GCAGC 5 cut(s) 91, 94, 97, 160, 197
LweI GCATC 1 cut(s) 70
MaeI CTAG 1 cut(s) 273
MalI GATC 1 cut(s) 155
MboI GATC 1 cut(s) 153
MboII GAAGA 1 cut(s) 89
MhlI GDGCHC 1 cut(s) 124
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 8 cut(s) 3, 77, 110, 171, 174, 175, 237, 275
MroXI GAANNNNTTC 1 cut(s) 316
MslI CAYNNNNRTG 1 cut(s) 50
MspA1I CMGCKG 2 cut(s) 151, 179
MspR9I CCNGG 1 cut(s) 134
Mva1269I GAATGC 1 cut(s) 211
MvaI CCWGG 1 cut(s) 134
MvnI CGCG 1 cut(s) 179
MwoI GCNNNNNNNGC 4 cut(s) 110, 119, 148, 185
NdeII GATC 1 cut(s) 153
NlaIII CATG 2 cut(s) 49, 55
NlaIV GGNNCC 2 cut(s) 138, 281
NspI RCATGY 1 cut(s) 49
PctI GAATGC 1 cut(s) 211
PdmI GAANNNNTTC 1 cut(s) 316
PflMI CCANNNNNTGG 1 cut(s) 327
PkrI GCNGC 6 cut(s) 106, 109, 112, 150, 187, 279
Psp6I CCWGG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 132
PspN4I GGNNCC 2 cut(s) 138, 281
PstI CTGCAG 1 cut(s) 115
PvuII CAGCTG 1 cut(s) 151
RseI CAYNNNNRTG 1 cut(s) 50
SacII CCGCGG 1 cut(s) 180
SatI GCNGC 6 cut(s) 105, 108, 111, 149, 186, 278
Sau3AI GATC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 134
SduI GDGCHC 1 cut(s) 124
SetI ASST 6 cut(s) 102, 121, 153, 200, 267, 274
SfaNI GCATC 1 cut(s) 70
SfcI CTRYAG 1 cut(s) 111
Sfr303I CCGCGG 1 cut(s) 180
SgrBI CCGCGG 1 cut(s) 180
SmiMI CAYNNNNRTG 1 cut(s) 50
SsiI CCGC 5 cut(s) 140, 170, 177, 179, 277
SspMI CTAG 1 cut(s) 273
StyD4I CCNGG 1 cut(s) 132
StyI CCWWGG 2 cut(s) 210, 272
TaqI TCGA 2 cut(s) 304, 310
TauI GCSGC 1 cut(s) 280
TseI GCWGC 5 cut(s) 104, 107, 110, 148, 185
TspDTI ATGAA 1 cut(s) 40
TspGWI ACGGA 1 cut(s) 190
Van91I CCANNNNNTGG 1 cut(s) 327
VneI GTGCAC 1 cut(s) 120
XceI RCATGY 1 cut(s) 49
XmaJI CCTAGG 1 cut(s) 272
XmnI GAANNNNTTC 1 cut(s) 316
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.