FvH4_6g14280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0018316
Physical Location & Seq
Reverse (-)
8750312 .. 8750913
602 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g14280.t1

Sequence Viewer

Length: 249 bp
ATGTCTCAGAGGCCAAATCGCCACCAGAGAAGGCCATCTCAGAGCATATTCATGTCCCCGGACTTCCTCCTATCCGAAGATGTTGTGGCTGGAGACAAGGTGGCCGCTGCTGCAGGAGGTGCACCAACCAACCAGGCTCCACCGAACCTGATCTCTCCTCCTCTCCCGCCGTCCGCTGAGGCAGCGAAAACCGGTGCGGAGAATGCCAAGGAGAACAAGACAACAACCACAGACGCAGCTAATAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

8.52

Weight (kDa)

6.54

Isoelectric Point (pI)

73.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02550
fragaria_vesca FvH4_6g14280
pyrus_communis pycom12g13300
rosa_chinensis RchiOBHm_Chr3g0467231
rosa_roxburghii Rroxscaffold_6G00413800
rosa_rugosa Rorug03G0086000
rosa_samantha Rh3AG134400 Rh3BG155700 Rh3CG155300 Rh3DG156500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 105, 167, 174, 197
AcoI YGGCCR 1 cut(s) 102
AgeI ACCGGT 1 cut(s) 191
AjnI CCWGG 1 cut(s) 132
AluBI AGCT 1 cut(s) 239
AluI AGCT 1 cut(s) 239
Alw21I GWGCWC 1 cut(s) 124
Alw26I GTCTC 2 cut(s) 9, 87
Alw44I GTGCAC 1 cut(s) 120
AoxI GGCC 3 cut(s) 11, 32, 102
ApaLI GTGCAC 1 cut(s) 120
ApeKI GCWGC 4 cut(s) 107, 110, 182, 236
AsiGI ACCGGT 1 cut(s) 191
AsuC2I CCSGG 1 cut(s) 59
BaeGI GKGCMC 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 124
BbvCI CCTCAGC 1 cut(s) 177
BbvI GCAGC 3 cut(s) 94, 97, 194
BccI CCATC 1 cut(s) 43
BceAI ACGGC 1 cut(s) 154
BciT130I CCWGG 1 cut(s) 134
BcnI CCSGG 1 cut(s) 59
BcoDI GTCTC 2 cut(s) 9, 87
BfaI CTAG 1 cut(s) 247
BfmI CTRYAG 1 cut(s) 111
BisI GCNGC 5 cut(s) 105, 108, 111, 183, 237
BlsI GCNGC 5 cut(s) 106, 109, 112, 184, 238
Bme1390I CCNGG 2 cut(s) 59, 134
BmiI GGNNCC 1 cut(s) 138
BmrFI CCNGG 2 cut(s) 59, 134
BpmI CTGGAG 1 cut(s) 111
Bpu10I CCTNAGC 1 cut(s) 177
BpuMI CCSGG 1 cut(s) 59
BsaJI CCNNGG 2 cut(s) 57, 207
BsaWI WCCGGW 1 cut(s) 191
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bse118I RCCGGY 1 cut(s) 191
BseBI CCWGG 1 cut(s) 134
BseDI CCNNGG 2 cut(s) 57, 207
BseMII CTCAG 3 cut(s) 20, 53, 168
BseRI GAGGAG 2 cut(s) 147, 150
BseSI GKGCMC 1 cut(s) 124
BseXI GCAGC 3 cut(s) 94, 97, 194
BshFI GGCC 3 cut(s) 13, 34, 104
BshTI ACCGGT 1 cut(s) 191
BsiHKAI GWGCWC 1 cut(s) 124
BsiSI CCGG 2 cut(s) 59, 192
BslFI GGGAC 1 cut(s) 40
BsmAI GTCTC 2 cut(s) 9, 87
BsmFI GGGAC 1 cut(s) 40
BsmI GAATGC 1 cut(s) 208
BsnI GGCC 3 cut(s) 13, 34, 104
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 1 cut(s) 150
BspACI CCGC 4 cut(s) 105, 167, 174, 197
BspANI GGCC 3 cut(s) 13, 34, 104
BspCNI CTCAG 3 cut(s) 19, 52, 169
BspLI GGNNCC 1 cut(s) 138
BspMAI CTGCAG 1 cut(s) 115
BsrFI RCCGGY 1 cut(s) 191
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 2 cut(s) 57, 207
BssMI GATC 1 cut(s) 150
BssT1I CCWWGG 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 134
BstAPI GCANNNNNTGC 1 cut(s) 119
BstDEI CTNAG 3 cut(s) 6, 39, 177
BstKTI GATC 1 cut(s) 153
BstMAI GTCTC 2 cut(s) 9, 87
BstMBI GATC 1 cut(s) 150
BstMWI GCNNNNNNNGC 4 cut(s) 110, 119, 182, 203
BstNI CCWGG 1 cut(s) 134
BstSCI CCNGG 2 cut(s) 57, 132
BstSFI CTRYAG 1 cut(s) 111
BstSLI GKGCMC 1 cut(s) 124
BstV1I GCAGC 3 cut(s) 94, 97, 194
BsuRI GGCC 3 cut(s) 13, 34, 104
Cfr10I RCCGGY 1 cut(s) 191
CseI GACGC 1 cut(s) 242
CspAI ACCGGT 1 cut(s) 191
CviAII CATG 1 cut(s) 52
CviJI RGCY 6 cut(s) 13, 34, 89, 104, 137, 239
CviKI_1 RGCY 6 cut(s) 13, 34, 89, 104, 137, 239
DdeI CTNAG 3 cut(s) 6, 39, 177
DpnI GATC 1 cut(s) 152
DpnII GATC 1 cut(s) 150
EaeI YGGCCR 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 207
EcoRII CCWGG 1 cut(s) 132
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 1 cut(s) 55
FaiI YATR 2 cut(s) 47, 53
FaqI GGGAC 1 cut(s) 40
FatI CATG 1 cut(s) 51
FauI CCCGC 1 cut(s) 174
Fnu4HI GCNGC 5 cut(s) 105, 108, 111, 183, 237
Fsp4HI GCNGC 5 cut(s) 105, 108, 111, 183, 237
FspBI CTAG 1 cut(s) 247
GluI GCNGC 5 cut(s) 105, 108, 111, 183, 237
GsuI CTGGAG 1 cut(s) 111
HaeIII GGCC 3 cut(s) 13, 34, 104
HapII CCGG 2 cut(s) 59, 192
HgaI GACGC 1 cut(s) 242
Hin1II CATG 1 cut(s) 55
HpaII CCGG 2 cut(s) 59, 192
Hpy166II GTNNAC 1 cut(s) 122
Hpy188I TCNGA 3 cut(s) 9, 42, 76
Hpy8I GTNNAC 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 24
HpyCH4V TGCA 2 cut(s) 113, 122
HpyF10VI GCNNNNNNNGC 4 cut(s) 110, 119, 182, 203
HpyF3I CTNAG 3 cut(s) 6, 39, 177
Hsp92II CATG 1 cut(s) 55
Kzo9I GATC 1 cut(s) 150
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 8 cut(s) 38, 72, 75, 99, 119, 146, 161, 205
Lsp1109I GCAGC 3 cut(s) 94, 97, 194
MaeI CTAG 1 cut(s) 247
MalI GATC 1 cut(s) 152
MboI GATC 1 cut(s) 150
MboII GAAGA 1 cut(s) 89
MhlI GDGCHC 1 cut(s) 124
MnlI CCTC 6 cut(s) 3, 77, 110, 168, 171, 172
MslI CAYNNNNRTG 1 cut(s) 50
MspA1I CMGCKG 2 cut(s) 107, 176
MspI CCGG 2 cut(s) 59, 192
MspR9I CCNGG 2 cut(s) 59, 134
Mva1269I GAATGC 1 cut(s) 208
MvaI CCWGG 1 cut(s) 134
MwoI GCNNNNNNNGC 4 cut(s) 110, 119, 182, 203
NciI CCSGG 1 cut(s) 59
NdeII GATC 1 cut(s) 150
NlaIII CATG 1 cut(s) 55
NlaIV GGNNCC 1 cut(s) 138
PctI GAATGC 1 cut(s) 208
PinAI ACCGGT 1 cut(s) 191
PkrI GCNGC 5 cut(s) 106, 109, 112, 184, 238
Psp6I CCWGG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 138
PstI CTGCAG 1 cut(s) 115
RseI CAYNNNNRTG 1 cut(s) 50
SatI GCNGC 5 cut(s) 105, 108, 111, 183, 237
Sau3AI GATC 1 cut(s) 150
ScrFI CCNGG 2 cut(s) 59, 134
SduI GDGCHC 1 cut(s) 124
SetI ASST 4 cut(s) 102, 121, 150, 241
SfcI CTRYAG 1 cut(s) 111
SmiMI CAYNNNNRTG 1 cut(s) 50
SsiI CCGC 4 cut(s) 105, 167, 174, 197
SspMI CTAG 1 cut(s) 247
StyD4I CCNGG 2 cut(s) 57, 132
StyI CCWWGG 1 cut(s) 207
TauI GCSGC 1 cut(s) 107
TseI GCWGC 4 cut(s) 107, 110, 182, 236
TspDTI ATGAA 1 cut(s) 40
VneI GTGCAC 1 cut(s) 120
XspI CTAG 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.