Rroxscaffold_6G00413800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0018316
Physical Location & Seq
Forward (+)
36126201 .. 36126452
252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00413800.1

Sequence Viewer

Length: 252 bp
ATGTCTCAGAGGCCAAGTCGCCACCAGAGAAGGCCATCCCAGAGCATGTTCATGTCCCCCGACTTCCTCCTATCCGAAGATGCCGTGGTCGGAGACAAGGTGGCCGCTGCTGCAGGAGGTGCACCAACCAACCAGGCTCCGCCATCGCAGCTGATCTCTCCTCCTCTCCCGCCGACCGCGGAGGCAGTGAAAACCGGCTCGGAGAATGCCAAGGAGAACAAGACAACAACCATAGACGCAGTTAATAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

8.71

Weight (kDa)

6.54

Isoelectric Point (pI)

81.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02550
fragaria_vesca FvH4_6g14280
pyrus_communis pycom12g13300
rosa_chinensis RchiOBHm_Chr3g0467231
rosa_roxburghii Rroxscaffold_6G00413800
rosa_rugosa Rorug03G0086000
rosa_samantha Rh3AG134400 Rh3BG155700 Rh3CG155300 Rh3DG156500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 179
AciI CCGC 5 cut(s) 105, 140, 170, 177, 179
AcoI YGGCCR 1 cut(s) 102
AjnI CCWGG 1 cut(s) 132
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
Alw21I GWGCWC 1 cut(s) 124
Alw26I GTCTC 2 cut(s) 9, 87
Alw44I GTGCAC 1 cut(s) 120
AoxI GGCC 3 cut(s) 11, 32, 102
ApaLI GTGCAC 1 cut(s) 120
ApeKI GCWGC 3 cut(s) 107, 110, 148
BaeGI GKGCMC 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 124
BbvI GCAGC 3 cut(s) 94, 97, 160
BccI CCATC 2 cut(s) 43, 151
BceAI ACGGC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 134
BcoDI GTCTC 2 cut(s) 9, 87
BfaI CTAG 1 cut(s) 250
BfmI CTRYAG 1 cut(s) 111
BisI GCNGC 4 cut(s) 105, 108, 111, 149
BlsI GCNGC 4 cut(s) 106, 109, 112, 150
Bme1390I CCNGG 1 cut(s) 134
BmiI GGNNCC 1 cut(s) 138
BmrFI CCNGG 1 cut(s) 134
BmsI GCATC 1 cut(s) 70
BsaJI CCNNGG 3 cut(s) 84, 177, 210
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bse118I RCCGGY 1 cut(s) 194
BseBI CCWGG 1 cut(s) 134
BseDI CCNNGG 3 cut(s) 84, 177, 210
BseGI GGATG 1 cut(s) 35
BseMII CTCAG 1 cut(s) 20
BseRI GAGGAG 2 cut(s) 150, 153
BseSI GKGCMC 1 cut(s) 124
BseXI GCAGC 3 cut(s) 94, 97, 160
Bsh1236I CGCG 1 cut(s) 179
Bsh1285I CGRYCG 1 cut(s) 177
BshFI GGCC 3 cut(s) 13, 34, 104
BsiEI CGRYCG 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 124
BsiSI CCGG 1 cut(s) 195
BslFI GGGAC 1 cut(s) 40
BsmAI GTCTC 2 cut(s) 9, 87
BsmFI GGGAC 1 cut(s) 40
BsmI GAATGC 1 cut(s) 211
BsnI GGCC 3 cut(s) 13, 34, 104
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 1 cut(s) 153
BspACI CCGC 5 cut(s) 105, 140, 170, 177, 179
BspANI GGCC 3 cut(s) 13, 34, 104
BspCNI CTCAG 1 cut(s) 19
BspFNI CGCG 1 cut(s) 179
BspLI GGNNCC 1 cut(s) 138
BspMAI CTGCAG 1 cut(s) 115
BsrFI RCCGGY 1 cut(s) 194
BssAI RCCGGY 1 cut(s) 194
BssECI CCNNGG 3 cut(s) 84, 177, 210
BssMI GATC 1 cut(s) 153
BssT1I CCWWGG 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 134
BstAPI GCANNNNNTGC 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 6
BstDSI CCRYGG 2 cut(s) 84, 177
BstF5I GGATG 1 cut(s) 35
BstFNI CGCG 1 cut(s) 179
BstKTI GATC 1 cut(s) 156
BstMAI GTCTC 2 cut(s) 9, 87
BstMBI GATC 1 cut(s) 153
BstMCI CGRYCG 1 cut(s) 177
BstMWI GCNNNNNNNGC 3 cut(s) 110, 119, 148
BstNI CCWGG 1 cut(s) 134
BstNSI RCATGY 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 132
BstSFI CTRYAG 1 cut(s) 111
BstSLI GKGCMC 1 cut(s) 124
BstUI CGCG 1 cut(s) 179
BstV1I GCAGC 3 cut(s) 94, 97, 160
BsuRI GGCC 3 cut(s) 13, 34, 104
BtgI CCRYGG 2 cut(s) 84, 177
BtgZI GCGATG 1 cut(s) 129
BtsCI GGATG 1 cut(s) 35
BtsI GCAGTG 1 cut(s) 192
BtsIMutI CAGTG 1 cut(s) 192
Cfr10I RCCGGY 1 cut(s) 194
Cfr42I CCGCGG 1 cut(s) 180
CseI GACGC 1 cut(s) 245
CviAII CATG 2 cut(s) 46, 52
CviJI RGCY 6 cut(s) 13, 34, 104, 137, 151, 198
CviKI_1 RGCY 6 cut(s) 13, 34, 104, 137, 151, 198
DdeI CTNAG 1 cut(s) 6
DpnI GATC 1 cut(s) 155
DpnII GATC 1 cut(s) 153
EaeI YGGCCR 1 cut(s) 102
EciI GGCGGA 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 210
EcoRII CCWGG 1 cut(s) 132
EcoT14I CCWWGG 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 2 cut(s) 49, 55
FaiI YATR 3 cut(s) 47, 53, 233
FaqI GGGAC 1 cut(s) 40
FatI CATG 2 cut(s) 45, 51
FauI CCCGC 1 cut(s) 177
Fnu4HI GCNGC 4 cut(s) 105, 108, 111, 149
FokI GGATG 1 cut(s) 22
Fsp4HI GCNGC 4 cut(s) 105, 108, 111, 149
FspBI CTAG 1 cut(s) 250
GluI GCNGC 4 cut(s) 105, 108, 111, 149
HaeIII GGCC 3 cut(s) 13, 34, 104
HapII CCGG 1 cut(s) 195
HgaI GACGC 1 cut(s) 245
Hin1II CATG 2 cut(s) 49, 55
HpaII CCGG 1 cut(s) 195
Hpy166II GTNNAC 1 cut(s) 122
Hpy188I TCNGA 4 cut(s) 9, 76, 92, 202
Hpy8I GTNNAC 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 24
HpyCH4V TGCA 2 cut(s) 113, 122
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 119, 148
HpyF3I CTNAG 1 cut(s) 6
Hsp92II CATG 2 cut(s) 49, 55
KspI CCGCGG 1 cut(s) 180
Kzo9I GATC 1 cut(s) 153
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 6 cut(s) 38, 53, 99, 119, 146, 208
Lsp1109I GCAGC 3 cut(s) 94, 97, 160
LweI GCATC 1 cut(s) 70
MaeI CTAG 1 cut(s) 250
MalI GATC 1 cut(s) 155
MboI GATC 1 cut(s) 153
MboII GAAGA 1 cut(s) 89
MhlI GDGCHC 1 cut(s) 124
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 6 cut(s) 3, 77, 110, 171, 174, 175
MseI TTAA 1 cut(s) 243
MslI CAYNNNNRTG 1 cut(s) 50
MspA1I CMGCKG 3 cut(s) 107, 151, 179
MspI CCGG 1 cut(s) 195
MspR9I CCNGG 1 cut(s) 134
Mva1269I GAATGC 1 cut(s) 211
MvaI CCWGG 1 cut(s) 134
MvnI CGCG 1 cut(s) 179
MwoI GCNNNNNNNGC 3 cut(s) 110, 119, 148
NdeII GATC 1 cut(s) 153
NlaIII CATG 2 cut(s) 49, 55
NlaIV GGNNCC 1 cut(s) 138
NspI RCATGY 1 cut(s) 49
PctI GAATGC 1 cut(s) 211
PkrI GCNGC 4 cut(s) 106, 109, 112, 150
Psp6I CCWGG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 138
PstI CTGCAG 1 cut(s) 115
PvuII CAGCTG 1 cut(s) 151
RseI CAYNNNNRTG 1 cut(s) 50
SacII CCGCGG 1 cut(s) 180
SaqAI TTAA 1 cut(s) 243
SatI GCNGC 4 cut(s) 105, 108, 111, 149
Sau3AI GATC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 134
SduI GDGCHC 1 cut(s) 124
SetI ASST 3 cut(s) 102, 121, 153
SfaNI GCATC 1 cut(s) 70
SfcI CTRYAG 1 cut(s) 111
Sfr303I CCGCGG 1 cut(s) 180
SgrBI CCGCGG 1 cut(s) 180
SmiMI CAYNNNNRTG 1 cut(s) 50
SsiI CCGC 5 cut(s) 105, 140, 170, 177, 179
SspMI CTAG 1 cut(s) 250
StyD4I CCNGG 1 cut(s) 132
StyI CCWWGG 1 cut(s) 210
TauI GCSGC 1 cut(s) 107
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TscAI CASTG 1 cut(s) 192
TseI GCWGC 3 cut(s) 107, 110, 148
TspDTI ATGAA 1 cut(s) 40
TspRI CASTG 1 cut(s) 192
VneI GTGCAC 1 cut(s) 120
XceI RCATGY 1 cut(s) 49
XspI CTAG 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.