AT5G03170

Fasciclin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016223
Physical Location & Seq
Reverse (-)
752750 .. 753657
908 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G03170.1

Sequence Viewer

Length: 741 bp
ATGGCTACTTCAAGAACATTCATTTTCTCTAATCTCTTCATCTTCTTCCTCGTTATAGCCACTACTTATGGTCAGGCTCCAGCTCCAGGCCCTTCAGGTCCAACGAACATAACCGCAATCCTAGAAAAGGCTGGTCAATTCACATTGTTCATAAGACTTCTTAAAAGCACTCAAGCCTCAGACCAAATCAACACTCAGCTCAATTCTTCCTCGAGTAATGGCTTAACCGTGTTTGCCCCGACTGATAACGCCTTCAACAGCCTCAAATCCGGAACCTTAAACTCATTGTCTGACCAACAAAAAGTTCAGCTTGTTCAGTTCCATGTCTTACCTACACTCATAACCATGCCTCAGTTTCAAACCGTTAGTAACCCTTTACGCACGCAAGCTGGAGATGGCCAAAACGGTAAATTCCCTCTTAACATCACTAGCTCCGGTAACCAAGTTAACATCACCACTGGAGTTGTCAGCGCCACCGTGGCTAACTCTGTCTACAGCGATAAGCAGCTGGCCGTTTATCAGGTTGATCAAGTTTTGCTGCCATTAGCCATGTTTGGATCAAGCGTGGCTCCTGCTCCGGCCCCTGAGAAAGGCGGCTCTGTTTCAAAAGGCTCAGCTTCCGGTGGCGATGATGGAGGAGATTCTACTGATTCATCTGATGCAGAGAGGACTGGATTCGGGTTTGGGATCAGAATCACTACCGTTGCAGCCATTGCTGCTTCTTCTTCTCTGTGGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009832 GO:0009834 GO:0009987 GO:0016020 GO:0031224 GO:0031225 GO:0042546 GO:0044085 GO:0044425 GO:0044464 GO:0071554 GO:0071669 GO:0071840 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

246

Amino Acids

25.59

Weight (kDa)

5.71

Isoelectric Point (pI)

33.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 46 - 181 6e-23 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016223)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03170
fragaria_vesca FvH4_6g15700
malus_domestica MD04G1100000.v1.1
prunus_persica Prupe.6G238300_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0469401
rosa_laevigata RLG00000024352
rosa_multiflora Rmu_co8311235.1_g000001 Rmu_sc0005274.1_g000010
rosa_roxburghii Rroxscaffold_6G00411920
rosa_rugosa Rorug03G0101500
rosa_samantha Rh3AG150500 Rh3BG174200 Rh3CG165200 Rh3DG201300
rosa_wichuraiana Rw3G014190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 492
AccIII TCCGGA 1 cut(s) 269
AciI CCGC 2 cut(s) 114, 594
AclWI GGATC 2 cut(s) 565, 695
AcoI YGGCCR 2 cut(s) 397, 510
AcsI RAATTY 1 cut(s) 410
AcuI CTGAAG 1 cut(s) 78
AfiI CCNNNNNNNGG 3 cut(s) 86, 127, 590
AgsI TTSAA 4 cut(s) 12, 256, 359, 606
AjnI CCWGG 1 cut(s) 85
AjuI GAANNNNNNNTTGG 2 cut(s) 288, 320
AluBI AGCT 7 cut(s) 83, 199, 310, 389, 432, 508, 617
AluI AGCT 7 cut(s) 83, 199, 310, 389, 432, 508, 617
AlwI GGATC 2 cut(s) 565, 695
Ama87I CYCGRG 1 cut(s) 211
Aor13HI TCCGGA 1 cut(s) 269
AoxI GGCC 4 cut(s) 88, 397, 510, 579
ApeKI GCWGC 4 cut(s) 505, 538, 707, 716
ApoI RAATTY 1 cut(s) 410
AspLEI GCGC 1 cut(s) 473
AspS9I GGNCC 3 cut(s) 89, 98, 580
AsuHPI GGTGA 1 cut(s) 445
AvaI CYCGRG 1 cut(s) 211
AvaII GGWCC 1 cut(s) 98
BalI TGGCCA 1 cut(s) 399
BbvI GCAGC 4 cut(s) 517, 525, 703, 719
BccI CCATC 2 cut(s) 389, 626
BceAI ACGGC 1 cut(s) 497
BciT130I CCWGG 1 cut(s) 87
BclI TGATCA 1 cut(s) 526
BfaI CTAG 2 cut(s) 122, 429
BfmI CTRYAG 1 cut(s) 493
BfoI RGCGCY 1 cut(s) 474
BglI GCCNNNNNGGC 1 cut(s) 479
BisI GCNGC 5 cut(s) 506, 539, 595, 708, 717
BlpI GCTNAGC 1 cut(s) 613
BlsI GCNGC 5 cut(s) 507, 540, 596, 709, 718
Bme1390I CCNGG 1 cut(s) 87
Bme18I GGWCC 1 cut(s) 98
BmeT110I CYCGRG 1 cut(s) 211
BmgT120I GGNCC 3 cut(s) 89, 98, 580
BmiI GGNNCC 4 cut(s) 78, 274, 570, 582
BmrFI CCNGG 1 cut(s) 87
BmsI GCATC 1 cut(s) 649
BpmI CTGGAG 4 cut(s) 63, 69, 411, 480
Bpu1102I GCTNAGC 1 cut(s) 613
BpuEI CTTGAG 1 cut(s) 156
BsaBI GATNNNNATC 1 cut(s) 692
BsaJI CCNNGG 1 cut(s) 477
BsaWI WCCGGW 3 cut(s) 269, 434, 620
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 127, 590
Bse1I ACTGG 2 cut(s) 463, 676
Bse3DI GCAATG 1 cut(s) 711
Bse8I GATNNNNATC 1 cut(s) 692
BseAI TCCGGA 1 cut(s) 269
BseBI CCWGG 1 cut(s) 87
BseDI CCNNGG 1 cut(s) 477
BseJI GATNNNNATC 1 cut(s) 692
BseLI CCNNNNNNNGG 3 cut(s) 86, 127, 590
BseMI GCAATG 1 cut(s) 711
BseMII CTCAG 5 cut(s) 192, 209, 365, 576, 627
BseNI ACTGG 2 cut(s) 463, 676
BseRI GAGGAG 1 cut(s) 651
BseXI GCAGC 4 cut(s) 517, 525, 703, 719
BshFI GGCC 4 cut(s) 90, 399, 512, 581
BsiHKCI CYCGRG 1 cut(s) 211
BsiSI CCGG 4 cut(s) 270, 435, 578, 621
BslI CCNNNNNNNGG 3 cut(s) 86, 127, 590
BsnI GGCC 4 cut(s) 90, 399, 512, 581
BsoBI CYCGRG 1 cut(s) 211
Bsp13I TCCGGA 1 cut(s) 269
Bsp143I GATC 3 cut(s) 526, 557, 687
Bsp1720I GCTNAGC 1 cut(s) 613
BspACI CCGC 2 cut(s) 114, 594
BspANI GGCC 4 cut(s) 90, 399, 512, 581
BspCNI CTCAG 5 cut(s) 191, 208, 364, 577, 626
BspEI TCCGGA 1 cut(s) 269
BspLI GGNNCC 4 cut(s) 78, 274, 570, 582
BspPI GGATC 2 cut(s) 565, 695
BsrDI GCAATG 1 cut(s) 711
BsrI ACTGG 2 cut(s) 463, 676
BssECI CCNNGG 1 cut(s) 477
BssMI GATC 3 cut(s) 526, 557, 687
Bst2UI CCWGG 1 cut(s) 87
Bst4CI ACNGT 5 cut(s) 229, 364, 407, 478, 703
Bst6I CTCTTC 1 cut(s) 41
BstAPI GCANNNNNTGC 1 cut(s) 713
BstC8I GCNNGC 3 cut(s) 383, 387, 510
BstDEI CTNAG 5 cut(s) 178, 195, 351, 585, 613
BstDSI CCRYGG 1 cut(s) 477
BstEII GGTNACC 1 cut(s) 437
BstENI CCTNNNNNAGG 2 cut(s) 125, 588
BstH2I RGCGCY 1 cut(s) 474
BstHHI GCGC 1 cut(s) 473
BstKTI GATC 3 cut(s) 529, 560, 690
BstMBI GATC 3 cut(s) 526, 557, 687
BstMWI GCNNNNNNNGC 3 cut(s) 479, 713, 716
BstNI CCWGG 1 cut(s) 87
BstPI GGTNACC 1 cut(s) 437
BstSCI CCNGG 1 cut(s) 85
BstSFI CTRYAG 1 cut(s) 493
BstV1I GCAGC 4 cut(s) 517, 525, 703, 719
BsuRI GGCC 4 cut(s) 90, 399, 512, 581
BtgI CCRYGG 1 cut(s) 477
BtgZI GCGATG 1 cut(s) 642
BtsIMutI CAGTG 1 cut(s) 456
Cac8I GCNNGC 3 cut(s) 383, 387, 510
CfoI GCGC 1 cut(s) 473
Cfr13I GGNCC 3 cut(s) 89, 98, 580
CspCI CAANNNNNGTGG 2 cut(s) 445, 480
CviAII CATG 3 cut(s) 323, 346, 550
DdeI CTNAG 5 cut(s) 178, 195, 351, 585, 613
DpnI GATC 3 cut(s) 528, 559, 689
DpnII GATC 3 cut(s) 526, 557, 687
EaeI YGGCCR 2 cut(s) 397, 510
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 78
Eco88I CYCGRG 1 cut(s) 211
Eco91I GGTNACC 1 cut(s) 437
EcoNI CCTNNNNNAGG 2 cut(s) 125, 588
EcoO109I RGGNCCY 1 cut(s) 89
EcoO65I GGTNACC 1 cut(s) 437
EcoRII CCWGG 1 cut(s) 85
FaeI CATG 3 cut(s) 326, 349, 553
FaiI YATR 9 cut(s) 56, 69, 110, 152, 324, 341, 347, 551, 739
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FatI CATG 3 cut(s) 322, 345, 549
FbaI TGATCA 1 cut(s) 526
FblI GTMKAC 1 cut(s) 492
Fnu4HI GCNGC 5 cut(s) 506, 539, 595, 708, 717
Fsp4HI GCNGC 5 cut(s) 506, 539, 595, 708, 717
FspBI CTAG 2 cut(s) 122, 429
GlaI GCGC 1 cut(s) 472
GluI GCNGC 5 cut(s) 506, 539, 595, 708, 717
GsuI CTGGAG 4 cut(s) 63, 69, 411, 480
HaeII RGCGCY 1 cut(s) 474
HaeIII GGCC 4 cut(s) 90, 399, 512, 581
HapII CCGG 4 cut(s) 270, 435, 578, 621
HhaI GCGC 1 cut(s) 473
Hin1II CATG 3 cut(s) 326, 349, 553
Hin6I GCGC 1 cut(s) 471
HinP1I GCGC 1 cut(s) 471
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
HinfI GANTC 4 cut(s) 641, 650, 675, 693
HpaI GTTAAC 1 cut(s) 448
HpaII CCGG 4 cut(s) 270, 435, 578, 621
HphI GGTGA 1 cut(s) 445
Hpy166II GTNNAC 2 cut(s) 448, 493
Hpy188I TCNGA 4 cut(s) 181, 292, 658, 692
Hpy188III TCNNGA 2 cut(s) 12, 270
Hpy8I GTNNAC 2 cut(s) 448, 493
HpyAV CCTTC 2 cut(s) 102, 262
HpyCH4III ACNGT 5 cut(s) 229, 364, 407, 478, 703
HpyCH4V TGCA 2 cut(s) 662, 707
HpyF10VI GCNNNNNNNGC 3 cut(s) 479, 713, 716
HpyF3I CTNAG 5 cut(s) 178, 195, 351, 585, 613
Hsp92II CATG 3 cut(s) 326, 349, 553
HspAI GCGC 1 cut(s) 471
Kpn2I TCCGGA 1 cut(s) 269
Ksp22I TGATCA 1 cut(s) 526
KspAI GTTAAC 1 cut(s) 448
Kzo9I GATC 3 cut(s) 526, 557, 687
LmnI GCTCC 5 cut(s) 82, 88, 437, 574, 580
Lsp1109I GCAGC 4 cut(s) 517, 525, 703, 719
LweI GCATC 1 cut(s) 649
MaeI CTAG 2 cut(s) 122, 429
MaeIII GTNAC 2 cut(s) 368, 437
MalI GATC 3 cut(s) 528, 559, 689
MboI GATC 3 cut(s) 526, 557, 687
MboII GAAGA 6 cut(s) 28, 34, 37, 198, 714, 717
MlsI TGGCCA 1 cut(s) 399
MluCI AATT 3 cut(s) 137, 202, 410
MluNI TGGCCA 1 cut(s) 399
MmeI TCCRAC 1 cut(s) 125
MnlI CCTC 8 cut(s) 59, 187, 220, 272, 360, 426, 629, 660
Mox20I TGGCCA 1 cut(s) 399
MroI TCCGGA 1 cut(s) 269
MscI TGGCCA 1 cut(s) 399
MseI TTAA 5 cut(s) 162, 224, 278, 420, 447
MslI CAYNNNNRTG 1 cut(s) 344
Msp20I TGGCCA 1 cut(s) 399
MspA1I CMGCKG 1 cut(s) 508
MspI CCGG 4 cut(s) 270, 435, 578, 621
MspR9I CCNGG 1 cut(s) 87
MvaI CCWGG 1 cut(s) 87
MwoI GCNNNNNNNGC 3 cut(s) 479, 713, 716
NdeII GATC 3 cut(s) 526, 557, 687
NlaIII CATG 3 cut(s) 326, 349, 553
NlaIV GGNNCC 4 cut(s) 78, 274, 570, 582
PaeR7I CTCGAG 1 cut(s) 211
PfeI GAWTC 4 cut(s) 641, 650, 675, 693
PkrI GCNGC 5 cut(s) 507, 540, 596, 709, 718
Psp6I CCWGG 1 cut(s) 85
PspEI GGTNACC 1 cut(s) 437
PspGI CCWGG 1 cut(s) 85
PspN4I GGNNCC 4 cut(s) 78, 274, 570, 582
PspPI GGNCC 3 cut(s) 89, 98, 580
PspXI VCTCGAGB 1 cut(s) 211
PvuII CAGCTG 1 cut(s) 508
RseI CAYNNNNRTG 1 cut(s) 344
SaqAI TTAA 5 cut(s) 162, 224, 278, 420, 447
SatI GCNGC 5 cut(s) 506, 539, 595, 708, 717
Sau3AI GATC 3 cut(s) 526, 557, 687
Sau96I GGNCC 3 cut(s) 89, 98, 580
ScrFI CCNGG 1 cut(s) 87
SfaNI GCATC 1 cut(s) 649
SfcI CTRYAG 1 cut(s) 493
Sfr274I CTCGAG 1 cut(s) 211
SinI GGWCC 1 cut(s) 98
SlaI CTCGAG 1 cut(s) 211
SmiMI CAYNNNNRTG 1 cut(s) 344
SmlI CTYRAG 2 cut(s) 171, 211
SmoI CTYRAG 2 cut(s) 171, 211
Sse9I AATT 3 cut(s) 137, 202, 410
SsiI CCGC 2 cut(s) 114, 594
SspMI CTAG 2 cut(s) 122, 429
StyD4I CCNGG 1 cut(s) 85
TaaI ACNGT 5 cut(s) 229, 364, 407, 478, 703
TaqI TCGA 1 cut(s) 212
TasI AATT 3 cut(s) 137, 202, 410
TauI GCSGC 1 cut(s) 597
TfiI GAWTC 4 cut(s) 641, 650, 675, 693
Tru1I TTAA 5 cut(s) 162, 224, 278, 420, 447
Tru9I TTAA 5 cut(s) 162, 224, 278, 420, 447
TscAI CASTG 1 cut(s) 463
TseI GCWGC 4 cut(s) 505, 538, 707, 716
TspDTI ATGAA 4 cut(s) 10, 28, 139, 642
TspRI CASTG 1 cut(s) 463
VpaK11BI GGWCC 1 cut(s) 98
XagI CCTNNNNNAGG 2 cut(s) 125, 588
XapI RAATTY 1 cut(s) 410
XhoI CTCGAG 1 cut(s) 211
XmiI GTMKAC 1 cut(s) 492
XspI CTAG 2 cut(s) 122, 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.