Prupe.6G238300_v2.0.a1

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016223
Physical Location & Seq
Forward (+)
23811224 .. 23812232
1009 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G238300.1

Sequence Viewer

Length: 738 bp
ATGGCAGTCATATCTTTCTTTACATTCTTTACTTTGATCATCTTCCTCCACTCAGCCACAGTTTCTGCTCAGTCTCCAGCAGCAGCTCCTGCACCATCAGCAACCAATGTGACTGCTATTCTTGAGAAGGCTGGTCAATTCACCACCTTGATTAAGCTACTTAAAAGCACCAGGATGGCTGACCAAATCGACACACAGCTCAGCACCTCAAACCAGGGCATCACCCTCTTTGCACCAACTGATAATGCCTTTTCCAGCCTCAAATCTGGCACGCTAAACTCCATTTCAGAACAGCAAAAGCTGGCGCTTATGCAATTTCACGTCCTACCGAATTTCTTTTCGGTCTCACAGTTCCAAACTGTCTCCAACCCTTTGCATACACAAGCTGGAAATAGCAATGATGGCCAGTTCCCATTAAATGTGACCACAGCAGGGAACCAAGTGAACATAACAACAGGGGTTGTCAATGCAACTGTGGCTAATACCATATTTACTGACAATCAGCTAGCTGTGTATGAGGTGGACCAGGTGCTCCTTCCTTTGAACATTTTTGGCCCAGCAGCACCGGCTCCTGCGCCATCTGCACCCAAAAAAAGTGTTAAAGGTGCTGATGCCCCTTCAGGGTCATCGGACACTGGCAGTACCCCAGATGCATCTGCTGCAATGGGGCTGAAACACCATGGAATGATAGCAGTATCCATGGGGGTAGCAGCAATTCTTGCAGCAGTTTTCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009832 GO:0009834 GO:0009987 GO:0016020 GO:0031224 GO:0031225 GO:0042546 GO:0044085 GO:0044425 GO:0044464 GO:0071554 GO:0071669 GO:0071840 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

246

Amino Acids

25.4

Weight (kDa)

6.16

Isoelectric Point (pI)

24.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016223)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03170
fragaria_vesca FvH4_6g15700
malus_domestica MD04G1100000.v1.1
prunus_persica Prupe.6G238300_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0469401
rosa_laevigata RLG00000024352
rosa_multiflora Rmu_co8311235.1_g000001 Rmu_sc0005274.1_g000010
rosa_roxburghii Rroxscaffold_6G00411920
rosa_rugosa Rorug03G0101500
rosa_samantha Rh3AG150500 Rh3BG174200 Rh3CG165200 Rh3DG201300
rosa_wichuraiana Rw3G014190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 403
AcsI RAATTY 1 cut(s) 331
AcuI CTGAAG 1 cut(s) 603
AfaI GTAC 1 cut(s) 643
AfiI CCNNNNNNNGG 2 cut(s) 432, 621
AgsI TTSAA 1 cut(s) 544
AjiI CACGTC 1 cut(s) 322
AjnI CCWGG 3 cut(s) 170, 213, 525
AluBI AGCT 7 cut(s) 86, 157, 199, 301, 386, 505, 509
AluI AGCT 7 cut(s) 86, 157, 199, 301, 386, 505, 509
Alw21I GWGCWC 1 cut(s) 534
Alw26I GTCTC 3 cut(s) 78, 349, 367
AlwNI CAGNNNCTG 2 cut(s) 65, 89
AoxI GGCC 2 cut(s) 403, 553
ApeKI GCWGC 6 cut(s) 80, 83, 560, 659, 710, 722
ApoI RAATTY 1 cut(s) 331
AspLEI GCGC 2 cut(s) 307, 577
AspS9I GGNCC 2 cut(s) 523, 554
AsuHPI GGTGA 2 cut(s) 133, 214
AsuNHI GCTAGC 1 cut(s) 505
AvaII GGWCC 1 cut(s) 523
BalI TGGCCA 1 cut(s) 405
Bbv12I GWGCWC 1 cut(s) 534
BbvI GCAGC 6 cut(s) 92, 95, 572, 646, 722, 734
BccI CCATC 4 cut(s) 103, 169, 395, 586
BciT130I CCWGG 3 cut(s) 172, 215, 527
BciVI GTATCC 1 cut(s) 706
BclI TGATCA 1 cut(s) 36
BcoDI GTCTC 3 cut(s) 78, 349, 367
BfaI CTAG 1 cut(s) 506
BfoI RGCGCY 1 cut(s) 308
BfuI GTATCC 1 cut(s) 706
BisI GCNGC 6 cut(s) 81, 84, 561, 660, 711, 723
BlpI GCTNAGC 1 cut(s) 200
BlsI GCNGC 6 cut(s) 82, 85, 562, 661, 712, 724
Bme1390I CCNGG 3 cut(s) 172, 215, 527
Bme18I GGWCC 1 cut(s) 523
BmgBI CACGTC 1 cut(s) 322
BmgT120I GGNCC 2 cut(s) 523, 554
BmiI GGNNCC 2 cut(s) 437, 570
BmrFI CCNGG 3 cut(s) 172, 215, 527
BmsI GCATC 4 cut(s) 228, 601, 640, 662
BmtI GCTAGC 1 cut(s) 509
BpmI CTGGAG 1 cut(s) 60
Bpu1102I GCTNAGC 1 cut(s) 200
BpuEI CTTGAG 1 cut(s) 143
BsaI GGTCTC 1 cut(s) 349
BsaJI CCNNGG 3 cut(s) 214, 679, 699
Bsc4I CCNNNNNNNGG 2 cut(s) 432, 621
Bse118I RCCGGY 1 cut(s) 565
Bse1I ACTGG 2 cut(s) 406, 640
Bse3DI GCAATG 2 cut(s) 403, 669
BseBI CCWGG 3 cut(s) 172, 215, 527
BseDI CCNNGG 3 cut(s) 214, 679, 699
BseGI GGATG 1 cut(s) 180
BseLI CCNNNNNNNGG 2 cut(s) 432, 621
BseMI GCAATG 2 cut(s) 403, 669
BseMII CTCAG 3 cut(s) 66, 83, 214
BseNI ACTGG 2 cut(s) 406, 640
BseXI GCAGC 6 cut(s) 92, 95, 572, 646, 722, 734
BseYI CCCAGC 1 cut(s) 556
BsgI GTGCAG 2 cut(s) 75, 567
BshFI GGCC 2 cut(s) 405, 555
BsiHKAI GWGCWC 1 cut(s) 534
BsiSI CCGG 1 cut(s) 566
BslI CCNNNNNNNGG 2 cut(s) 432, 621
BsmAI GTCTC 3 cut(s) 78, 349, 367
BsnI GGCC 2 cut(s) 405, 555
Bso31I GGTCTC 1 cut(s) 349
Bsp1286I GDGCHC 1 cut(s) 534
Bsp143I GATC 1 cut(s) 36
Bsp1720I GCTNAGC 1 cut(s) 200
Bsp19I CCATGG 2 cut(s) 679, 699
BspANI GGCC 2 cut(s) 405, 555
BspCNI CTCAG 3 cut(s) 65, 82, 213
BspLI GGNNCC 2 cut(s) 437, 570
BspOI GCTAGC 1 cut(s) 509
BspTNI GGTCTC 1 cut(s) 349
BsrDI GCAATG 2 cut(s) 403, 669
BsrFI RCCGGY 1 cut(s) 565
BsrI ACTGG 2 cut(s) 406, 640
BssAI RCCGGY 1 cut(s) 565
BssECI CCNNGG 3 cut(s) 214, 679, 699
BssMI GATC 1 cut(s) 36
BssT1I CCWWGG 2 cut(s) 679, 699
Bst2UI CCWGG 3 cut(s) 172, 215, 527
Bst4CI ACNGT 4 cut(s) 61, 351, 361, 475
BstAPI GCANNNNNTGC 3 cut(s) 89, 659, 719
BstC8I GCNNGC 3 cut(s) 272, 303, 507
BstDEI CTNAG 3 cut(s) 52, 69, 200
BstDSI CCRYGG 2 cut(s) 679, 699
BstF5I GGATG 1 cut(s) 180
BstH2I RGCGCY 1 cut(s) 308
BstHHI GCGC 2 cut(s) 307, 577
BstKTI GATC 1 cut(s) 39
BstMAI GTCTC 3 cut(s) 78, 349, 367
BstMBI GATC 1 cut(s) 36
BstMWI GCNNNNNNNGC 8 cut(s) 89, 98, 402, 476, 566, 581, 659, 719
BstNI CCWGG 3 cut(s) 172, 215, 527
BstSCI CCNGG 3 cut(s) 170, 213, 525
BstV1I GCAGC 6 cut(s) 92, 95, 572, 646, 722, 734
BsuI GTATCC 1 cut(s) 706
BsuRI GGCC 2 cut(s) 405, 555
BtgI CCRYGG 2 cut(s) 679, 699
BtrI CACGTC 1 cut(s) 322
BtsCI GGATG 1 cut(s) 180
BtsIMutI CAGTG 1 cut(s) 633
Cac8I GCNNGC 3 cut(s) 272, 303, 507
CaiI CAGNNNCTG 2 cut(s) 65, 89
CfoI GCGC 2 cut(s) 307, 577
Cfr10I RCCGGY 1 cut(s) 565
Cfr13I GGNCC 2 cut(s) 523, 554
CsiI ACCWGGT 1 cut(s) 525
Csp6I GTAC 1 cut(s) 642
CviAII CATG 2 cut(s) 680, 700
CviQI GTAC 1 cut(s) 642
DdeI CTNAG 3 cut(s) 52, 69, 200
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
EaeI YGGCCR 1 cut(s) 403
Eco130I CCWWGG 2 cut(s) 679, 699
Eco31I GGTCTC 1 cut(s) 349
Eco47I GGWCC 1 cut(s) 523
Eco57I CTGAAG 1 cut(s) 603
EcoRII CCWGG 3 cut(s) 170, 213, 525
EcoT14I CCWWGG 2 cut(s) 679, 699
EcoT22I ATGCAT 1 cut(s) 655
ErhI CCWWGG 2 cut(s) 679, 699
FaeI CATG 2 cut(s) 683, 703
FaiI YATR 8 cut(s) 11, 311, 378, 449, 488, 516, 681, 701
FatI CATG 2 cut(s) 679, 699
FbaI TGATCA 1 cut(s) 36
Fnu4HI GCNGC 6 cut(s) 81, 84, 561, 660, 711, 723
FokI GGATG 1 cut(s) 187
Fsp4HI GCNGC 6 cut(s) 81, 84, 561, 660, 711, 723
FspBI CTAG 1 cut(s) 506
GlaI GCGC 2 cut(s) 306, 576
GluI GCNGC 6 cut(s) 81, 84, 561, 660, 711, 723
GsaI CCCAGC 1 cut(s) 560
GsuI CTGGAG 1 cut(s) 60
HaeII RGCGCY 1 cut(s) 308
HaeIII GGCC 2 cut(s) 405, 555
HapII CCGG 1 cut(s) 566
HhaI GCGC 2 cut(s) 307, 577
Hin1II CATG 2 cut(s) 683, 703
Hin6I GCGC 2 cut(s) 305, 575
HinP1I GCGC 2 cut(s) 305, 575
HpaII CCGG 1 cut(s) 566
HphI GGTGA 2 cut(s) 133, 214
Hpy166II GTNNAC 2 cut(s) 445, 523
Hpy188I TCNGA 2 cut(s) 289, 631
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 2 cut(s) 445, 523
HpyAV CCTTC 3 cut(s) 121, 545, 627
HpyCH4III ACNGT 4 cut(s) 61, 351, 361, 475
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 9 cut(s) 92, 233, 313, 376, 470, 584, 653, 662, 722
HpyF10VI GCNNNNNNNGC 8 cut(s) 89, 98, 402, 476, 566, 581, 659, 719
HpyF3I CTNAG 3 cut(s) 52, 69, 200
HpySE526I ACGT 1 cut(s) 321
Hsp92II CATG 2 cut(s) 683, 703
HspAI GCGC 2 cut(s) 305, 575
Ksp22I TGATCA 1 cut(s) 36
Kzo9I GATC 1 cut(s) 36
LmnI GCTCC 3 cut(s) 91, 537, 574
Lsp1109I GCAGC 6 cut(s) 92, 95, 572, 646, 722, 734
LweI GCATC 4 cut(s) 228, 601, 640, 662
MabI ACCWGGT 1 cut(s) 525
MaeI CTAG 1 cut(s) 506
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 2 cut(s) 109, 421
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 1 cut(s) 34
MhlI GDGCHC 1 cut(s) 534
MlsI TGGCCA 1 cut(s) 405
MluCI AATT 4 cut(s) 137, 314, 331, 714
MluNI TGGCCA 1 cut(s) 405
MmeI TCCRAC 1 cut(s) 390
MnlI CCTC 5 cut(s) 56, 217, 236, 269, 511
Mox20I TGGCCA 1 cut(s) 405
Mph1103I ATGCAT 1 cut(s) 655
MscI TGGCCA 1 cut(s) 405
MseI TTAA 4 cut(s) 153, 162, 416, 600
MslI CAYNNNNRTG 1 cut(s) 173
Msp20I TGGCCA 1 cut(s) 405
MspI CCGG 1 cut(s) 566
MspR9I CCNGG 3 cut(s) 172, 215, 527
MvaI CCWGG 3 cut(s) 172, 215, 527
MwoI GCNNNNNNNGC 8 cut(s) 89, 98, 402, 476, 566, 581, 659, 719
NcoI CCATGG 2 cut(s) 679, 699
NdeII GATC 1 cut(s) 36
NheI GCTAGC 1 cut(s) 505
NlaIII CATG 2 cut(s) 683, 703
NlaIV GGNNCC 2 cut(s) 437, 570
NmuCI GTSAC 2 cut(s) 109, 421
NsiI ATGCAT 1 cut(s) 655
PkrI GCNGC 6 cut(s) 82, 85, 562, 661, 712, 724
Psp6I CCWGG 3 cut(s) 170, 213, 525
PspFI CCCAGC 1 cut(s) 556
PspGI CCWGG 3 cut(s) 170, 213, 525
PspN4I GGNNCC 2 cut(s) 437, 570
PspPI GGNCC 2 cut(s) 523, 554
PstNI CAGNNNCTG 2 cut(s) 65, 89
RsaI GTAC 1 cut(s) 643
RsaNI GTAC 1 cut(s) 642
RseI CAYNNNNRTG 1 cut(s) 173
SaqAI TTAA 4 cut(s) 153, 162, 416, 600
SatI GCNGC 6 cut(s) 81, 84, 561, 660, 711, 723
Sau3AI GATC 1 cut(s) 36
Sau96I GGNCC 2 cut(s) 523, 554
ScrFI CCNGG 3 cut(s) 172, 215, 527
SduI GDGCHC 1 cut(s) 534
SexAI ACCWGGT 1 cut(s) 525
SfaNI GCATC 4 cut(s) 228, 601, 640, 662
SinI GGWCC 1 cut(s) 523
SmiMI CAYNNNNRTG 1 cut(s) 173
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 4 cut(s) 137, 314, 331, 714
SspMI CTAG 1 cut(s) 506
StyD4I CCNGG 3 cut(s) 170, 213, 525
StyI CCWWGG 2 cut(s) 679, 699
TaaI ACNGT 4 cut(s) 61, 351, 361, 475
TaiI ACGT 1 cut(s) 324
TaqI TCGA 1 cut(s) 189
TaqII GACCGA 1 cut(s) 331
TasI AATT 4 cut(s) 137, 314, 331, 714
Tru1I TTAA 4 cut(s) 153, 162, 416, 600
Tru9I TTAA 4 cut(s) 153, 162, 416, 600
TscAI CASTG 1 cut(s) 640
TseFI GTSAC 2 cut(s) 109, 421
TseI GCWGC 6 cut(s) 80, 83, 560, 659, 710, 722
Tsp45I GTSAC 2 cut(s) 109, 421
TspRI CASTG 1 cut(s) 640
VpaK11BI GGWCC 1 cut(s) 523
XapI RAATTY 1 cut(s) 331
XspI CTAG 1 cut(s) 506
Zsp2I ATGCAT 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.