Rroxscaffold_6G00411920

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0016223
Physical Location & Seq
Forward (+)
34533593 .. 34534330
738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00411920.1

Sequence Viewer

Length: 738 bp
ATGGCACCCCAATACCTCTTCCCATTATTCTTTTTTGTGATCTTCTTCTTCCATTCGCGCATAATTTCTGCTCAATCTCCAGCAGTTGCTCCGGCACCATCAGGCACCAATGTGACAGCAGTTCTTGAAAAGGCCGGTCAGTTCACTACTTTTATCAAGCTTCTCAAAAGCACAAAGACGGCCGACCAAATCAACACCCAGCTCAGCACATCAAACCAAGGCATCACTATCTTTGCTCCAACTGACAATGCCTTTGCATCCCTCAAAGCAGGCACGCTAAACTCCATTTCAGAACAACAAAAGCTCCAACTACTCCAGTTCCATATCCTCCCCTCTTACTATACTACCTCACAGTTCCAAACCGCCAGCAACCCTTTGCATACACAGGCAGGGAATAGCGATGATGGGCAATTCCCACTCAATGTGACCACATCAGGCAACCAAGTGAACATAACAACTGGGGTTGTCACTGCCTCAGTGGCTAATACCATATTTACAGATAATCAGCTCGCTGTGTATCAGGTGGACCAGGTGCTCCTTCCTTTGGCAATTTTTGGCTCACCAGCACCAGCTCCAGCGCCAGCTGCTAAAACAAGTGTTAAAGGTTCTGATGCTCCTTCCGCAGGGTCGTCATCGAATGACAGTCCTGTTGACGCATCTGCTGCAATTGGCCTGAAGCACCAGACAATGAAAGCAGTGTCCATGGCATTAACAATGCTTGCAGCATTCTTGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009832 GO:0009834 GO:0009987 GO:0016020 GO:0031224 GO:0031225 GO:0042546 GO:0044085 GO:0044425 GO:0044464 GO:0071554 GO:0071669 GO:0071840 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

245

Amino Acids

25.76

Weight (kDa)

6.9

Isoelectric Point (pI)

36.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 47 - 181 4.1e-24 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016223)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03170
fragaria_vesca FvH4_6g15700
malus_domestica MD04G1100000.v1.1
prunus_persica Prupe.6G238300_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0469401
rosa_laevigata RLG00000024352
rosa_multiflora Rmu_co8311235.1_g000001 Rmu_sc0005274.1_g000010
rosa_roxburghii Rroxscaffold_6G00411920
rosa_rugosa Rorug03G0101500
rosa_samantha Rh3AG150500 Rh3BG174200 Rh3CG165200 Rh3DG201300
rosa_wichuraiana Rw3G014190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 4, 94, 104
AccII CGCG 1 cut(s) 58
AciI CCGC 2 cut(s) 363, 621
AcoI YGGCCR 1 cut(s) 180
AcuI CTGAAG 1 cut(s) 695
AfiI CCNNNNNNNGG 2 cut(s) 544, 623
AgsI TTSAA 1 cut(s) 128
AjnI CCWGG 1 cut(s) 528
AleI CACNNNNGTG 1 cut(s) 110
AluBI AGCT 6 cut(s) 160, 202, 304, 508, 572, 584
AluI AGCT 6 cut(s) 160, 202, 304, 508, 572, 584
Alw21I GWGCWC 1 cut(s) 537
AoxI GGCC 3 cut(s) 132, 180, 670
ApeKI GCWGC 3 cut(s) 584, 662, 722
ArsI GACNNNNNNTTYG 2 cut(s) 236, 268
AspLEI GCGC 2 cut(s) 60, 580
AspS9I GGNCC 1 cut(s) 526
AsuHPI GGTGA 1 cut(s) 552
AvaII GGWCC 1 cut(s) 526
BanI GGYRCC 3 cut(s) 4, 94, 104
Bbv12I GWGCWC 1 cut(s) 537
BbvI GCAGC 3 cut(s) 571, 649, 734
BccI CCATC 2 cut(s) 106, 398
BceAI ACGGC 1 cut(s) 195
BciT130I CCWGG 1 cut(s) 530
BfoI RGCGCY 1 cut(s) 581
BglI GCCNNNNNGGC 1 cut(s) 479
BisI GCNGC 3 cut(s) 585, 663, 723
BlpI GCTNAGC 1 cut(s) 203
BlsI GCNGC 3 cut(s) 586, 664, 724
Bme1390I CCNGG 1 cut(s) 530
Bme18I GGWCC 1 cut(s) 526
BmgT120I GGNCC 1 cut(s) 526
BmiI GGNNCC 3 cut(s) 6, 96, 106
BmrFI CCNGG 1 cut(s) 530
BmrI ACTGGG 1 cut(s) 468
BmsI GCATC 4 cut(s) 231, 266, 601, 665
BmuI ACTGGG 1 cut(s) 468
BpmI CTGGAG 3 cut(s) 63, 299, 558
Bpu1102I GCTNAGC 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 217, 702
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 2 cut(s) 544, 623
Bse118I RCCGGY 1 cut(s) 134
Bse1I ACTGG 2 cut(s) 316, 463
BseBI CCWGG 1 cut(s) 530
BseDI CCNNGG 2 cut(s) 217, 702
BseGI GGATG 1 cut(s) 257
BseLI CCNNNNNNNGG 2 cut(s) 544, 623
BseMII CTCAG 2 cut(s) 217, 489
BseNI ACTGG 2 cut(s) 316, 463
BseX3I CGGCCG 1 cut(s) 180
BseXI GCAGC 3 cut(s) 571, 649, 734
BseYI CCCAGC 1 cut(s) 198
Bsh1236I CGCG 1 cut(s) 58
Bsh1285I CGRYCG 1 cut(s) 183
BshFI GGCC 3 cut(s) 134, 182, 672
BshNI GGYRCC 3 cut(s) 4, 94, 104
BsiEI CGRYCG 1 cut(s) 183
BsiHKAI GWGCWC 1 cut(s) 537
BsiSI CCGG 2 cut(s) 92, 135
BslI CCNNNNNNNGG 2 cut(s) 544, 623
BsmI GAATGC 1 cut(s) 725
BsnI GGCC 3 cut(s) 134, 182, 672
Bsp1286I GDGCHC 1 cut(s) 537
Bsp143I GATC 1 cut(s) 39
Bsp1720I GCTNAGC 1 cut(s) 203
Bsp19I CCATGG 1 cut(s) 702
BspACI CCGC 2 cut(s) 363, 621
BspANI GGCC 3 cut(s) 134, 182, 672
BspCNI CTCAG 2 cut(s) 216, 488
BspFNI CGCG 1 cut(s) 58
BspLI GGNNCC 3 cut(s) 6, 96, 106
BspT107I GGYRCC 3 cut(s) 4, 94, 104
BsrFI RCCGGY 1 cut(s) 134
BsrI ACTGG 2 cut(s) 316, 463
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 2 cut(s) 217, 702
BssMI GATC 1 cut(s) 39
BssT1I CCWWGG 2 cut(s) 217, 702
Bst2UI CCWGG 1 cut(s) 530
Bst4CI ACNGT 2 cut(s) 354, 644
Bst6I CTCTTC 1 cut(s) 23
BstAPI GCANNNNNTGC 1 cut(s) 662
BstC8I GCNNGC 6 cut(s) 271, 275, 367, 510, 582, 720
BstDEI CTNAG 2 cut(s) 203, 475
BstDSI CCRYGG 1 cut(s) 702
BstENI CCTNNNNNAGG 1 cut(s) 621
BstF5I GGATG 1 cut(s) 257
BstFNI CGCG 1 cut(s) 58
BstH2I RGCGCY 1 cut(s) 581
BstHHI GCGC 2 cut(s) 60, 580
BstKTI GATC 1 cut(s) 42
BstMBI GATC 1 cut(s) 39
BstMCI CGRYCG 1 cut(s) 183
BstMWI GCNNNNNNNGC 4 cut(s) 479, 584, 620, 662
BstNI CCWGG 1 cut(s) 530
BstSCI CCNGG 1 cut(s) 528
BstUI CGCG 1 cut(s) 58
BstV1I GCAGC 3 cut(s) 571, 649, 734
BstZI CGGCCG 1 cut(s) 180
BsuRI GGCC 3 cut(s) 134, 182, 672
BtgI CCRYGG 1 cut(s) 702
BtgZI GCGATG 1 cut(s) 414
BtsCI GGATG 1 cut(s) 257
BtsI GCAGTG 2 cut(s) 468, 702
BtsIMutI CAGTG 3 cut(s) 468, 483, 702
Cac8I GCNNGC 6 cut(s) 271, 275, 367, 510, 582, 720
CfoI GCGC 2 cut(s) 60, 580
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 1 cut(s) 526
CseI GACGC 1 cut(s) 662
CsiI ACCWGGT 1 cut(s) 528
CviAII CATG 1 cut(s) 703
DdeI CTNAG 2 cut(s) 203, 475
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
EaeI YGGCCR 1 cut(s) 180
EagI CGGCCG 1 cut(s) 180
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
EclXI CGGCCG 1 cut(s) 180
Eco130I CCWWGG 2 cut(s) 217, 702
Eco47I GGWCC 1 cut(s) 526
Eco52I CGGCCG 1 cut(s) 180
Eco57I CTGAAG 1 cut(s) 695
EcoNI CCTNNNNNAGG 1 cut(s) 621
EcoRII CCWGG 1 cut(s) 528
EcoT14I CCWWGG 2 cut(s) 217, 702
ErhI CCWWGG 2 cut(s) 217, 702
FaeI CATG 1 cut(s) 706
FaiI YATR 7 cut(s) 62, 324, 342, 381, 452, 491, 704
FatI CATG 1 cut(s) 702
Fnu4HI GCNGC 3 cut(s) 585, 663, 723
FokI GGATG 1 cut(s) 244
Fsp4HI GCNGC 3 cut(s) 585, 663, 723
GlaI GCGC 2 cut(s) 59, 579
GluI GCNGC 3 cut(s) 585, 663, 723
GsaI CCCAGC 1 cut(s) 202
GsuI CTGGAG 3 cut(s) 63, 299, 558
HaeII RGCGCY 1 cut(s) 581
HaeIII GGCC 3 cut(s) 134, 182, 672
HapII CCGG 2 cut(s) 92, 135
HgaI GACGC 1 cut(s) 662
HhaI GCGC 2 cut(s) 60, 580
Hin1II CATG 1 cut(s) 706
Hin6I GCGC 2 cut(s) 58, 578
HinP1I GCGC 2 cut(s) 58, 578
HincII GTYRAC 1 cut(s) 652
HindII GTYRAC 1 cut(s) 652
HindIII AAGCTT 1 cut(s) 158
HpaII CCGG 2 cut(s) 92, 135
HphI GGTGA 1 cut(s) 552
Hpy166II GTNNAC 4 cut(s) 144, 448, 526, 652
Hpy188I TCNGA 2 cut(s) 292, 610
Hpy188III TCNNGA 1 cut(s) 125
Hpy8I GTNNAC 4 cut(s) 144, 448, 526, 652
HpyAV CCTTC 2 cut(s) 548, 627
HpyCH4III ACNGT 2 cut(s) 354, 644
HpyCH4V TGCA 4 cut(s) 257, 379, 665, 722
HpyF10VI GCNNNNNNNGC 4 cut(s) 479, 584, 620, 662
HpyF3I CTNAG 2 cut(s) 203, 475
Hsp92II CATG 1 cut(s) 706
HspAI GCGC 2 cut(s) 58, 578
Kzo9I GATC 1 cut(s) 39
LmnI GCTCC 6 cut(s) 94, 241, 309, 540, 577, 619
Lsp1109I GCAGC 3 cut(s) 571, 649, 734
LweI GCATC 4 cut(s) 231, 266, 601, 665
MabI ACCWGGT 1 cut(s) 528
MaeIII GTNAC 3 cut(s) 112, 424, 466
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MboII GAAGA 4 cut(s) 10, 34, 37, 40
MfeI CAATTG 1 cut(s) 666
MhlI GDGCHC 1 cut(s) 537
MluCI AATT 4 cut(s) 63, 410, 549, 666
MmeI TCCRAC 2 cut(s) 263, 331
MnlI CCTC 6 cut(s) 26, 272, 338, 343, 358, 484
MseI TTAA 2 cut(s) 600, 710
MslI CAYNNNNRTG 1 cut(s) 110
MspA1I CMGCKG 1 cut(s) 584
MspI CCGG 2 cut(s) 92, 135
MspR9I CCNGG 1 cut(s) 530
MunI CAATTG 1 cut(s) 666
Mva1269I GAATGC 1 cut(s) 725
MvaI CCWGG 1 cut(s) 530
MvnI CGCG 1 cut(s) 58
MwoI GCNNNNNNNGC 4 cut(s) 479, 584, 620, 662
NcoI CCATGG 1 cut(s) 702
NdeII GATC 1 cut(s) 39
NlaIII CATG 1 cut(s) 706
NlaIV GGNNCC 3 cut(s) 6, 96, 106
NmuCI GTSAC 3 cut(s) 112, 424, 466
OliI CACNNNNGTG 1 cut(s) 110
PctI GAATGC 1 cut(s) 725
PkrI GCNGC 3 cut(s) 586, 664, 724
Psp6I CCWGG 1 cut(s) 528
PspFI CCCAGC 1 cut(s) 198
PspGI CCWGG 1 cut(s) 528
PspN4I GGNNCC 3 cut(s) 6, 96, 106
PspPI GGNCC 1 cut(s) 526
PvuII CAGCTG 1 cut(s) 584
RseI CAYNNNNRTG 1 cut(s) 110
SaqAI TTAA 2 cut(s) 600, 710
SatI GCNGC 3 cut(s) 585, 663, 723
Sau3AI GATC 1 cut(s) 39
Sau96I GGNCC 1 cut(s) 526
ScrFI CCNGG 1 cut(s) 530
SduI GDGCHC 1 cut(s) 537
SexAI ACCWGGT 1 cut(s) 528
SfaNI GCATC 4 cut(s) 231, 266, 601, 665
SinI GGWCC 1 cut(s) 526
SmiMI CAYNNNNRTG 1 cut(s) 110
Sse9I AATT 4 cut(s) 63, 410, 549, 666
SsiI CCGC 2 cut(s) 363, 621
StyD4I CCNGG 1 cut(s) 528
StyI CCWWGG 2 cut(s) 217, 702
TaaI ACNGT 2 cut(s) 354, 644
TaqI TCGA 1 cut(s) 635
TasI AATT 4 cut(s) 63, 410, 549, 666
Tru1I TTAA 2 cut(s) 600, 710
Tru9I TTAA 2 cut(s) 600, 710
TscAI CASTG 3 cut(s) 475, 483, 702
TseFI GTSAC 3 cut(s) 112, 424, 466
TseI GCWGC 3 cut(s) 584, 662, 722
Tsp45I GTSAC 3 cut(s) 112, 424, 466
TspDTI ATGAA 1 cut(s) 704
TspRI CASTG 3 cut(s) 475, 483, 702
VpaK11BI GGWCC 1 cut(s) 526
XagI CCTNNNNNAGG 1 cut(s) 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.