FvH4_6g15700

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016223
Physical Location & Seq
Reverse (-)
9793628 .. 9794368
741 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g15700.t1

Sequence Viewer

Length: 741 bp
ATGACACCCCAATACCGCTTCCCATTCTTCTTTTTTGTGATCTTCTTCTTCCATTCGCGCATTGTTTCTGCTCAATCTCCAGCAGTTGCTCCGGCACCATCAGGCACCAATGTGACCGCGGTTCTTGAAAAGGCCGGTCAGTTCACTACTTTAATCAAGCTTCTCAAAAGTACAAAGACAGCCGACCAAATCAACACGCAGCTCAGCACATCAAACCAAGGCATCACCATCTTTGCACCAACTGACAATGCCTTTGCATCCCTCAAAGCAGGCACACTAAACTCCATTACGGAACAACAAAAGCTCCAGCTACTCCAGTTCCATATCCTCCCCACTTACTATAGTACCTCACAGTTCCAAACCGCCACCAACCCTTTGCATACACAGGCCGGGAATAGCGATGATGGGCAGTTCCCGCTCAATGTGACCACATCAGGCACCCAAGTGAACATAACAACTGGGGTTGACACTGCCTCAGTGTCTAATACCATATTCACAGACAACCAGCTAGCTGTGTATCAGGTGGACCAGGTCCTCCTTCCTCAAGCAATTTTTGGCTCACCAGCGCCCGCTCCAGCGCCAGCTGCTCCCAAAAAGAGTGTTAAAGGTTCTGATTCTCCTTCAGCAGGGTCATCATCCGATGACAGTCCTGTTGATGCATCTGCTGCAATGGGGCTGAAGCACCAGACCATCAAAGCTGCGTCCCTTGGAGTGGCAATGTTTACAGCATTCTTGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009832 GO:0009834 GO:0009987 GO:0016020 GO:0031224 GO:0031225 GO:0042546 GO:0044085 GO:0044425 GO:0044464 GO:0071554 GO:0071669 GO:0071840 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

247

Amino Acids

25.98

Weight (kDa)

6.9

Isoelectric Point (pI)

35.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 47 - 181 6.3e-23 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016223)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03170
fragaria_vesca FvH4_6g15700
malus_domestica MD04G1100000.v1.1
prunus_persica Prupe.6G238300_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0469401
rosa_laevigata RLG00000024352
rosa_multiflora Rmu_co8311235.1_g000001 Rmu_sc0005274.1_g000010
rosa_roxburghii Rroxscaffold_6G00411920
rosa_rugosa Rorug03G0101500
rosa_samantha Rh3AG150500 Rh3BG174200 Rh3CG165200 Rh3DG201300
rosa_wichuraiana Rw3G014190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 94, 104, 437
AccBSI CCGCTC 2 cut(s) 418, 572
AccII CGCG 2 cut(s) 58, 119
AciI CCGC 6 cut(s) 16, 117, 119, 363, 416, 570
AcuI CTGAAG 2 cut(s) 606, 698
AfaI GTAC 2 cut(s) 172, 346
AfiI CCNNNNNNNGG 2 cut(s) 626, 712
AgsI TTSAA 1 cut(s) 128
AjnI CCWGG 1 cut(s) 528
AleI CACNNNNGTG 2 cut(s) 110, 443
AluBI AGCT 8 cut(s) 160, 202, 304, 310, 508, 512, 584, 698
AluI AGCT 8 cut(s) 160, 202, 304, 310, 508, 512, 584, 698
AoxI GGCC 2 cut(s) 132, 387
ApeKI GCWGC 4 cut(s) 199, 584, 665, 698
ArsI GACNNNNNNTTYG 2 cut(s) 236, 268
AspLEI GCGC 3 cut(s) 60, 568, 580
AspS9I GGNCC 2 cut(s) 526, 532
AsuC2I CCSGG 1 cut(s) 391
AsuHPI GGTGA 2 cut(s) 217, 552
AsuNHI GCTAGC 1 cut(s) 508
AvaII GGWCC 2 cut(s) 526, 532
BaeI ACNNNNGTAYC 2 cut(s) 328, 361
BanI GGYRCC 3 cut(s) 94, 104, 437
BbvI GCAGC 4 cut(s) 211, 571, 652, 685
BccI CCATC 4 cut(s) 106, 236, 398, 698
BciT130I CCWGG 1 cut(s) 530
BcnI CCSGG 1 cut(s) 391
BfaI CTAG 1 cut(s) 509
BfmI CTRYAG 1 cut(s) 340
BfoI RGCGCY 2 cut(s) 569, 581
BisI GCNGC 4 cut(s) 200, 585, 666, 699
BlpI GCTNAGC 1 cut(s) 203
BlsI GCNGC 4 cut(s) 201, 586, 667, 700
Bme1390I CCNGG 2 cut(s) 391, 530
Bme18I GGWCC 2 cut(s) 526, 532
BmgT120I GGNCC 2 cut(s) 526, 532
BmiI GGNNCC 3 cut(s) 96, 106, 439
BmrFI CCNGG 2 cut(s) 391, 530
BmrI ACTGGG 1 cut(s) 468
BmsI GCATC 4 cut(s) 231, 266, 646, 668
BmtI GCTAGC 1 cut(s) 512
BmuI ACTGGG 1 cut(s) 468
BpmI CTGGAG 4 cut(s) 63, 290, 299, 558
Bpu1102I GCTNAGC 1 cut(s) 203
BpuEI CTTGAG 1 cut(s) 528
BpuMI CCSGG 1 cut(s) 391
BsaJI CCNNGG 3 cut(s) 117, 217, 706
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 2 cut(s) 626, 712
Bse118I RCCGGY 1 cut(s) 134
Bse1I ACTGG 2 cut(s) 316, 463
Bse3DI GCAATG 2 cut(s) 675, 723
BseBI CCWGG 1 cut(s) 530
BseDI CCNNGG 3 cut(s) 117, 217, 706
BseGI GGATG 2 cut(s) 257, 635
BseLI CCNNNNNNNGG 2 cut(s) 626, 712
BseMI GCAATG 2 cut(s) 675, 723
BseMII CTCAG 2 cut(s) 217, 489
BseNI ACTGG 2 cut(s) 316, 463
BseXI GCAGC 4 cut(s) 211, 571, 652, 685
Bsh1236I CGCG 2 cut(s) 58, 119
BshFI GGCC 2 cut(s) 134, 389
BshNI GGYRCC 3 cut(s) 94, 104, 437
BsiSI CCGG 3 cut(s) 92, 135, 390
BslFI GGGAC 1 cut(s) 688
BslI CCNNNNNNNGG 2 cut(s) 626, 712
BsmFI GGGAC 1 cut(s) 688
BsmI GAATGC 1 cut(s) 728
BsnI GGCC 2 cut(s) 134, 389
Bsp143I GATC 1 cut(s) 39
Bsp1720I GCTNAGC 1 cut(s) 203
BspACI CCGC 6 cut(s) 16, 117, 119, 363, 416, 570
BspANI GGCC 2 cut(s) 134, 389
BspCNI CTCAG 2 cut(s) 216, 488
BspFNI CGCG 2 cut(s) 58, 119
BspLI GGNNCC 3 cut(s) 96, 106, 439
BspOI GCTAGC 1 cut(s) 512
BspT107I GGYRCC 3 cut(s) 94, 104, 437
BsrBI CCGCTC 2 cut(s) 418, 572
BsrDI GCAATG 2 cut(s) 675, 723
BsrFI RCCGGY 1 cut(s) 134
BsrI ACTGG 2 cut(s) 316, 463
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 3 cut(s) 117, 217, 706
BssMI GATC 1 cut(s) 39
BssT1I CCWWGG 2 cut(s) 217, 706
Bst2UI CCWGG 1 cut(s) 530
Bst4CI ACNGT 2 cut(s) 354, 647
BstAPI GCANNNNNTGC 1 cut(s) 665
BstC8I GCNNGC 4 cut(s) 271, 510, 570, 582
BstDEI CTNAG 2 cut(s) 203, 475
BstDSI CCRYGG 1 cut(s) 117
BstENI CCTNNNNNAGG 1 cut(s) 624
BstF5I GGATG 2 cut(s) 257, 635
BstFNI CGCG 2 cut(s) 58, 119
BstH2I RGCGCY 2 cut(s) 569, 581
BstHHI GCGC 3 cut(s) 60, 568, 580
BstKTI GATC 1 cut(s) 42
BstMBI GATC 1 cut(s) 39
BstMWI GCNNNNNNNGC 3 cut(s) 415, 584, 665
BstNI CCWGG 1 cut(s) 530
BstSCI CCNGG 2 cut(s) 389, 528
BstSFI CTRYAG 1 cut(s) 340
BstUI CGCG 2 cut(s) 58, 119
BstV1I GCAGC 4 cut(s) 211, 571, 652, 685
BsuRI GGCC 2 cut(s) 134, 389
BtgI CCRYGG 1 cut(s) 117
BtgZI GCGATG 1 cut(s) 414
BtsCI GGATG 2 cut(s) 257, 635
BtsI GCAGTG 1 cut(s) 468
BtsIMutI CAGTG 2 cut(s) 468, 483
Cac8I GCNNGC 4 cut(s) 271, 510, 570, 582
CfoI GCGC 3 cut(s) 60, 568, 580
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 2 cut(s) 526, 532
Cfr42I CCGCGG 1 cut(s) 120
CseI GACGC 1 cut(s) 690
CsiI ACCWGGT 1 cut(s) 528
Csp6I GTAC 2 cut(s) 171, 345
CviQI GTAC 2 cut(s) 171, 345
DdeI CTNAG 2 cut(s) 203, 475
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
Eco130I CCWWGG 2 cut(s) 217, 706
Eco47I GGWCC 2 cut(s) 526, 532
Eco57I CTGAAG 2 cut(s) 606, 698
EcoNI CCTNNNNNAGG 1 cut(s) 624
EcoO109I RGGNCCY 1 cut(s) 532
EcoRII CCWGG 1 cut(s) 528
EcoT14I CCWWGG 2 cut(s) 217, 706
EcoT22I ATGCAT 1 cut(s) 661
ErhI CCWWGG 2 cut(s) 217, 706
FaiI YATR 5 cut(s) 324, 342, 381, 452, 491
FaqI GGGAC 1 cut(s) 688
FauI CCCGC 2 cut(s) 423, 577
Fnu4HI GCNGC 4 cut(s) 200, 585, 666, 699
FokI GGATG 2 cut(s) 244, 622
Fsp4HI GCNGC 4 cut(s) 200, 585, 666, 699
FspBI CTAG 1 cut(s) 509
GlaI GCGC 3 cut(s) 59, 567, 579
GluI GCNGC 4 cut(s) 200, 585, 666, 699
GsuI CTGGAG 4 cut(s) 63, 290, 299, 558
HaeII RGCGCY 2 cut(s) 569, 581
HaeIII GGCC 2 cut(s) 134, 389
HapII CCGG 3 cut(s) 92, 135, 390
HgaI GACGC 1 cut(s) 690
HhaI GCGC 3 cut(s) 60, 568, 580
Hin6I GCGC 3 cut(s) 58, 566, 578
HinP1I GCGC 3 cut(s) 58, 566, 578
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HindIII AAGCTT 1 cut(s) 158
HinfI GANTC 1 cut(s) 614
HpaII CCGG 3 cut(s) 92, 135, 390
HphI GGTGA 2 cut(s) 217, 552
Hpy166II GTNNAC 5 cut(s) 144, 448, 466, 526, 723
Hpy188I TCNGA 2 cut(s) 613, 640
Hpy188III TCNNGA 1 cut(s) 125
Hpy8I GTNNAC 5 cut(s) 144, 448, 466, 526, 723
HpyAV CCTTC 2 cut(s) 548, 630
HpyCH4III ACNGT 2 cut(s) 354, 647
HpyCH4V TGCA 5 cut(s) 236, 257, 379, 659, 668
HpyF10VI GCNNNNNNNGC 3 cut(s) 415, 584, 665
HpyF3I CTNAG 2 cut(s) 203, 475
HspAI GCGC 3 cut(s) 58, 566, 578
KspI CCGCGG 1 cut(s) 120
Kzo9I GATC 1 cut(s) 39
LmnI GCTCC 4 cut(s) 94, 309, 577, 592
Lsp1109I GCAGC 4 cut(s) 211, 571, 652, 685
LweI GCATC 4 cut(s) 231, 266, 646, 668
MabI ACCWGGT 1 cut(s) 528
MaeI CTAG 1 cut(s) 509
MaeIII GTNAC 2 cut(s) 112, 424
MalI GATC 1 cut(s) 41
MbiI CCGCTC 2 cut(s) 418, 572
MboI GATC 1 cut(s) 39
MboII GAAGA 4 cut(s) 19, 34, 37, 40
MluCI AATT 1 cut(s) 549
MnlI CCTC 6 cut(s) 272, 338, 358, 484, 545, 552
Mph1103I ATGCAT 1 cut(s) 661
MseI TTAA 2 cut(s) 152, 603
MslI CAYNNNNRTG 2 cut(s) 110, 443
MspA1I CMGCKG 2 cut(s) 119, 584
MspI CCGG 3 cut(s) 92, 135, 390
MspR9I CCNGG 2 cut(s) 391, 530
Mva1269I GAATGC 1 cut(s) 728
MvaI CCWGG 1 cut(s) 530
MvnI CGCG 2 cut(s) 58, 119
MwoI GCNNNNNNNGC 3 cut(s) 415, 584, 665
NciI CCSGG 1 cut(s) 391
NdeII GATC 1 cut(s) 39
NheI GCTAGC 1 cut(s) 508
NlaIV GGNNCC 3 cut(s) 96, 106, 439
NmuCI GTSAC 2 cut(s) 112, 424
NsiI ATGCAT 1 cut(s) 661
OliI CACNNNNGTG 2 cut(s) 110, 443
PctI GAATGC 1 cut(s) 728
PfeI GAWTC 1 cut(s) 614
PflFI GACNNNGTC 1 cut(s) 530
PkrI GCNGC 4 cut(s) 201, 586, 667, 700
PpuMI RGGWCCY 1 cut(s) 532
Psp5II RGGWCCY 1 cut(s) 532
Psp6I CCWGG 1 cut(s) 528
PspGI CCWGG 1 cut(s) 528
PspN4I GGNNCC 3 cut(s) 96, 106, 439
PspPI GGNCC 2 cut(s) 526, 532
PspPPI RGGWCCY 1 cut(s) 532
PsyI GACNNNGTC 1 cut(s) 530
PvuII CAGCTG 1 cut(s) 584
RsaI GTAC 2 cut(s) 172, 346
RsaNI GTAC 2 cut(s) 171, 345
RseI CAYNNNNRTG 2 cut(s) 110, 443
SacII CCGCGG 1 cut(s) 120
SaqAI TTAA 2 cut(s) 152, 603
SatI GCNGC 4 cut(s) 200, 585, 666, 699
Sau3AI GATC 1 cut(s) 39
Sau96I GGNCC 2 cut(s) 526, 532
ScrFI CCNGG 2 cut(s) 391, 530
SexAI ACCWGGT 1 cut(s) 528
SfaNI GCATC 4 cut(s) 231, 266, 646, 668
SfcI CTRYAG 1 cut(s) 340
Sfr303I CCGCGG 1 cut(s) 120
SgrBI CCGCGG 1 cut(s) 120
SinI GGWCC 2 cut(s) 526, 532
SmiMI CAYNNNNRTG 2 cut(s) 110, 443
SmlI CTYRAG 1 cut(s) 543
SmoI CTYRAG 1 cut(s) 543
Sse9I AATT 1 cut(s) 549
SsiI CCGC 6 cut(s) 16, 117, 119, 363, 416, 570
SspMI CTAG 1 cut(s) 509
StyD4I CCNGG 2 cut(s) 389, 528
StyI CCWWGG 2 cut(s) 217, 706
TaaI ACNGT 2 cut(s) 354, 647
TasI AATT 1 cut(s) 549
TatI WGTACW 1 cut(s) 170
TfiI GAWTC 1 cut(s) 614
Tru1I TTAA 2 cut(s) 152, 603
Tru9I TTAA 2 cut(s) 152, 603
TscAI CASTG 2 cut(s) 475, 483
TseFI GTSAC 2 cut(s) 112, 424
TseI GCWGC 4 cut(s) 199, 584, 665, 698
Tsp45I GTSAC 2 cut(s) 112, 424
TspGWI ACGGA 1 cut(s) 305
TspRI CASTG 2 cut(s) 475, 483
Tth111I GACNNNGTC 1 cut(s) 530
VpaK11BI GGWCC 2 cut(s) 526, 532
XagI CCTNNNNNAGG 1 cut(s) 624
XspI CTAG 1 cut(s) 509
Zsp2I ATGCAT 1 cut(s) 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.