Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8311235.1

Orthogroup ID

OG0016223

Physical Location & Seq

Genomic Coordinates Reverse (-)

334 .. 920

Gene Structure 587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8311235.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 587 bp

tgatcaagcttctcaaaagcacaaagacggccgaccaaatcaacacccagctcagcacatcaaaccaaggcatcactatctttgcaccaactgacaatgcctttgcatccctcaaagcaggcacgctaaactccatttcagaacaacaaaagctccaactactccagttccatatcctcccctcttactattctacctcacagttccaaaccgccagcaaccctttgcatacacaggcagggaatagcgatgatgggcagttcccactcaatgtgaccacatcaggcaaccaagtaaacataacaactggggttgtcactgcctcagtggctaataccatatttacagacaaccagctagctgtgtatcaggtggaccaggtgctccttcctttggcaatttttggctcaccagcacccgctccagcgccagctgctaaaacaagtgttaaaggttctgatgctcctgccgcagggtcgtcatcgaatgacagtcctgttgacgcatctgctgcaattggcctgaagcaccagacaatgaaagcagtgtccatggcattaacaatgcttgcagcattcttgttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009832 GO:0009834 GO:0009987 GO:0016020 GO:0031224 GO:0031225 GO:0042546 GO:0044085 GO:0044425 GO:0044464 GO:0071554 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

194

Amino Acids

20.14

Weight (kDa)

6.29

Isoelectric Point (pI)

32.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03170
fragaria_vesca	FvH4_6g15700
malus_domestica	MD04G1100000.v1.1
prunus_persica	Prupe.6G238300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0469401
rosa_laevigata	RLG00000024352
rosa_multiflora	Rmu_co8311235.1_g000001 Rmu_sc0005274.1_g000010
rosa_roxburghii	Rroxscaffold_6G00411920
rosa_rugosa	Rorug03G0101500
rosa_samantha	Rh3AG150500 Rh3BG174200 Rh3CG165200 Rh3DG201300
rosa_wichuraiana	Rw3G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	421
AciI	CCGC	3 cut(s)	212, 419, 470
AcoI	YGGCCR	1 cut(s)	29
AcuI	CTGAAG	1 cut(s)	544
AfiI	CCNNNNNNNGG	2 cut(s)	393, 472
AjnI	CCWGG	1 cut(s)	377
AluBI	AGCT	6 cut(s)	9, 51, 153, 357, 361, 433
AluI	AGCT	6 cut(s)	9, 51, 153, 357, 361, 433
Alw21I	GWGCWC	1 cut(s)	386
AoxI	GGCC	2 cut(s)	29, 519
ApeKI	GCWGC	3 cut(s)	433, 511, 571
ArsI	GACNNNNNNTTYG	2 cut(s)	85, 117
AspLEI	GCGC	1 cut(s)	429
AspS9I	GGNCC	1 cut(s)	375
AsuHPI	GGTGA	1 cut(s)	401
AsuNHI	GCTAGC	1 cut(s)	357
AvaII	GGWCC	1 cut(s)	375
Bbv12I	GWGCWC	1 cut(s)	386
BbvI	GCAGC	3 cut(s)	420, 498, 583
BccI	CCATC	1 cut(s)	247
BceAI	ACGGC	1 cut(s)	44
BciT130I	CCWGG	1 cut(s)	379
BclI	TGATCA	1 cut(s)	2
BfaI	CTAG	1 cut(s)	358
BfoI	RGCGCY	1 cut(s)	430
BglI	GCCNNNNNGGC	1 cut(s)	328
BisI	GCNGC	4 cut(s)	434, 470, 512, 572
BlpI	GCTNAGC	1 cut(s)	52
BlsI	GCNGC	4 cut(s)	435, 471, 513, 573
Bme1390I	CCNGG	1 cut(s)	379
Bme18I	GGWCC	1 cut(s)	375
BmgT120I	GGNCC	1 cut(s)	375
BmrFI	CCNGG	1 cut(s)	379
BmrI	ACTGGG	1 cut(s)	317
BmsI	GCATC	4 cut(s)	80, 115, 450, 514
BmtI	GCTAGC	1 cut(s)	361
BmuI	ACTGGG	1 cut(s)	317
BpmI	CTGGAG	2 cut(s)	148, 407
Bpu1102I	GCTNAGC	1 cut(s)	52
BsaJI	CCNNGG	2 cut(s)	66, 551
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	2 cut(s)	393, 472
Bse1I	ACTGG	2 cut(s)	165, 312
BseBI	CCWGG	1 cut(s)	379
BseDI	CCNNGG	2 cut(s)	66, 551
BseGI	GGATG	1 cut(s)	106
BseLI	CCNNNNNNNGG	2 cut(s)	393, 472
BseMII	CTCAG	2 cut(s)	66, 338
BseNI	ACTGG	2 cut(s)	165, 312
BseX3I	CGGCCG	1 cut(s)	29
BseXI	GCAGC	3 cut(s)	420, 498, 583
BseYI	CCCAGC	1 cut(s)	47
Bsh1285I	CGRYCG	1 cut(s)	32
BshFI	GGCC	2 cut(s)	31, 521
BsiEI	CGRYCG	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	386
BslI	CCNNNNNNNGG	2 cut(s)	393, 472
BsmI	GAATGC	1 cut(s)	574
BsnI	GGCC	2 cut(s)	31, 521
Bsp1286I	GDGCHC	1 cut(s)	386
Bsp143I	GATC	1 cut(s)	2
Bsp1720I	GCTNAGC	1 cut(s)	52
Bsp19I	CCATGG	1 cut(s)	551
BspACI	CCGC	3 cut(s)	212, 419, 470
BspANI	GGCC	2 cut(s)	31, 521
BspCNI	CTCAG	2 cut(s)	65, 337
BspOI	GCTAGC	1 cut(s)	361
BsrBI	CCGCTC	1 cut(s)	421
BsrI	ACTGG	2 cut(s)	165, 312
BssECI	CCNNGG	2 cut(s)	66, 551
BssMI	GATC	1 cut(s)	2
BssT1I	CCWWGG	2 cut(s)	66, 551
Bst2UI	CCWGG	1 cut(s)	379
Bst4CI	ACNGT	2 cut(s)	203, 493
BstAPI	GCANNNNNTGC	1 cut(s)	511
BstC8I	GCNNGC	6 cut(s)	120, 124, 216, 359, 431, 569
BstDEI	CTNAG	2 cut(s)	52, 324
BstDSI	CCRYGG	1 cut(s)	551
BstENI	CCTNNNNNAGG	1 cut(s)	470
BstF5I	GGATG	1 cut(s)	106
BstH2I	RGCGCY	1 cut(s)	430
BstHHI	GCGC	1 cut(s)	429
BstKTI	GATC	1 cut(s)	5
BstMBI	GATC	1 cut(s)	2
BstMCI	CGRYCG	1 cut(s)	32
BstMWI	GCNNNNNNNGC	4 cut(s)	328, 433, 469, 511
BstNI	CCWGG	1 cut(s)	379
BstSCI	CCNGG	1 cut(s)	377
BstV1I	GCAGC	3 cut(s)	420, 498, 583
BstZI	CGGCCG	1 cut(s)	29
BsuRI	GGCC	2 cut(s)	31, 521
BtgI	CCRYGG	1 cut(s)	551
BtgZI	GCGATG	1 cut(s)	263
BtsCI	GGATG	1 cut(s)	106
BtsI	GCAGTG	2 cut(s)	317, 551
BtsIMutI	CAGTG	3 cut(s)	317, 332, 551
Cac8I	GCNNGC	6 cut(s)	120, 124, 216, 359, 431, 569
CfoI	GCGC	1 cut(s)	429
Cfr13I	GGNCC	1 cut(s)	375
CseI	GACGC	1 cut(s)	511
CsiI	ACCWGGT	1 cut(s)	377
CviAII	CATG	1 cut(s)	552
DdeI	CTNAG	2 cut(s)	52, 324
DpnI	GATC	1 cut(s)	4
DpnII	GATC	1 cut(s)	2
EaeI	YGGCCR	1 cut(s)	29
EagI	CGGCCG	1 cut(s)	29
EclXI	CGGCCG	1 cut(s)	29
Eco130I	CCWWGG	2 cut(s)	66, 551
Eco47I	GGWCC	1 cut(s)	375
Eco52I	CGGCCG	1 cut(s)	29
Eco57I	CTGAAG	1 cut(s)	544
EcoNI	CCTNNNNNAGG	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	377
EcoT14I	CCWWGG	2 cut(s)	66, 551
ErhI	CCWWGG	2 cut(s)	66, 551
FaeI	CATG	1 cut(s)	555
FaiI	YATR	5 cut(s)	173, 230, 301, 340, 553
FatI	CATG	1 cut(s)	551
FauI	CCCGC	1 cut(s)	426
FbaI	TGATCA	1 cut(s)	2
Fnu4HI	GCNGC	4 cut(s)	434, 470, 512, 572
FokI	GGATG	1 cut(s)	93
Fsp4HI	GCNGC	4 cut(s)	434, 470, 512, 572
FspBI	CTAG	1 cut(s)	358
GlaI	GCGC	1 cut(s)	428
GluI	GCNGC	4 cut(s)	434, 470, 512, 572
GsaI	CCCAGC	1 cut(s)	51
GsuI	CTGGAG	2 cut(s)	148, 407
HaeII	RGCGCY	1 cut(s)	430
HaeIII	GGCC	2 cut(s)	31, 521
HgaI	GACGC	1 cut(s)	511
HhaI	GCGC	1 cut(s)	429
Hin1II	CATG	1 cut(s)	555
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HincII	GTYRAC	1 cut(s)	501
HindII	GTYRAC	1 cut(s)	501
HindIII	AAGCTT	1 cut(s)	7
HphI	GGTGA	1 cut(s)	401
Hpy166II	GTNNAC	3 cut(s)	297, 375, 501
Hpy188I	TCNGA	2 cut(s)	141, 459
Hpy8I	GTNNAC	3 cut(s)	297, 375, 501
HpyAV	CCTTC	1 cut(s)	397
HpyCH4III	ACNGT	2 cut(s)	203, 493
HpyCH4V	TGCA	5 cut(s)	85, 106, 228, 514, 571
HpyF10VI	GCNNNNNNNGC	4 cut(s)	328, 433, 469, 511
HpyF3I	CTNAG	2 cut(s)	52, 324
Hsp92II	CATG	1 cut(s)	555
HspAI	GCGC	1 cut(s)	427
Ksp22I	TGATCA	1 cut(s)	2
Kzo9I	GATC	1 cut(s)	2
LmnI	GCTCC	4 cut(s)	158, 389, 426, 468
Lsp1109I	GCAGC	3 cut(s)	420, 498, 583
LweI	GCATC	4 cut(s)	80, 115, 450, 514
MabI	ACCWGGT	1 cut(s)	377
MaeI	CTAG	1 cut(s)	358
MaeIII	GTNAC	2 cut(s)	273, 315
MalI	GATC	1 cut(s)	4
MbiI	CCGCTC	1 cut(s)	421
MboI	GATC	1 cut(s)	2
MfeI	CAATTG	1 cut(s)	515
MhlI	GDGCHC	1 cut(s)	386
MluCI	AATT	2 cut(s)	398, 515
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	5 cut(s)	121, 187, 192, 207, 333
MseI	TTAA	2 cut(s)	449, 559
MspA1I	CMGCKG	1 cut(s)	433
MspR9I	CCNGG	1 cut(s)	379
MunI	CAATTG	1 cut(s)	515
Mva1269I	GAATGC	1 cut(s)	574
MvaI	CCWGG	1 cut(s)	379
MwoI	GCNNNNNNNGC	4 cut(s)	328, 433, 469, 511
NcoI	CCATGG	1 cut(s)	551
NdeII	GATC	1 cut(s)	2
NheI	GCTAGC	1 cut(s)	357
NlaIII	CATG	1 cut(s)	555
NmuCI	GTSAC	2 cut(s)	273, 315
PctI	GAATGC	1 cut(s)	574
PkrI	GCNGC	4 cut(s)	435, 471, 513, 573
Psp6I	CCWGG	1 cut(s)	377
PspFI	CCCAGC	1 cut(s)	47
PspGI	CCWGG	1 cut(s)	377
PspPI	GGNCC	1 cut(s)	375
PvuII	CAGCTG	1 cut(s)	433
SaqAI	TTAA	2 cut(s)	449, 559
SatI	GCNGC	4 cut(s)	434, 470, 512, 572
Sau3AI	GATC	1 cut(s)	2
Sau96I	GGNCC	1 cut(s)	375
ScrFI	CCNGG	1 cut(s)	379
SduI	GDGCHC	1 cut(s)	386
SexAI	ACCWGGT	1 cut(s)	377
SfaNI	GCATC	4 cut(s)	80, 115, 450, 514
SinI	GGWCC	1 cut(s)	375
Sse9I	AATT	2 cut(s)	398, 515
SsiI	CCGC	3 cut(s)	212, 419, 470
SspMI	CTAG	1 cut(s)	358
StyD4I	CCNGG	1 cut(s)	377
StyI	CCWWGG	2 cut(s)	66, 551
TaaI	ACNGT	2 cut(s)	203, 493
TaqI	TCGA	1 cut(s)	484
TasI	AATT	2 cut(s)	398, 515
TauI	GCSGC	1 cut(s)	472
Tru1I	TTAA	2 cut(s)	449, 559
Tru9I	TTAA	2 cut(s)	449, 559
TscAI	CASTG	3 cut(s)	324, 332, 551
TseFI	GTSAC	2 cut(s)	273, 315
TseI	GCWGC	3 cut(s)	433, 511, 571
Tsp45I	GTSAC	2 cut(s)	273, 315
TspDTI	ATGAA	1 cut(s)	553
TspRI	CASTG	3 cut(s)	324, 332, 551
VpaK11BI	GGWCC	1 cut(s)	375
XagI	CCTNNNNNAGG	1 cut(s)	470
XspI	CTAG	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.