AT5G03560

Pentacotripeptide-repeat region of PRORP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015042
Physical Location & Seq
Reverse (-)
900315 .. 902770
2456 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G03560.3

Sequence Viewer

Length: 726 bp
ATGGCGGTTCGTCTCGCGAGGTCATTGGCTGCGTCACCCTCGTCACGTCCATCGTGTTTATCCCTCGGAAATCGCTTCTCAGCCTCAGATATCACTTCATCTGCGATTAACGGCGGCGAGTTTTCTGATTTCGTTAGAGCTTTCGCCTTTTATTCGTCTTCGTCCTCTTGGTGGTCGTCTCCCGATGATTTGACGGCGTCATCGAAGAGGAAAGAGAAGAAGACTACAGAGCGTTTCTCTGCCGTGATTGACGCAGTCCATGACCGGAAACTCCCGCCGGAGCTACGTGGGCGGCGCGATTTCGTAAGGTCAGAGACTGATATAATCAACGTGGTCGAGCAAAGGATATGGCATTCAATGGAAGAAGGCCACTTTGAGAACTTACCCGGTAAAGGCAAACCCTTGAACCTCCATACAAATCCTCACGCAGACCCAGCGGAGGATACATTGTATCGGATTCTTAACAAGAACGGGTTTGCTCCCGAATGGGTGGAGCTCAACAAAGAGATAAGAAACAAAGCAAAAGAATGGAGAGTTTCACTGAAGAAAGCATGGACAATGAAACTCGAGGAAGACCAATCGGGATGGGAAGAGAGATCAGATTTGCTGAAAAACGAATTGAAACAAATCAATAACATGGTATTCAGGTACAATCTGATCGTTCCTTTCGGCCGTCAAATGTTTGGACTGAAGTGGGAGAAAGAGATTGATCGCTTGAAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 Ribosomal_L15e

Protein Analysis

241

Amino Acids

27.83

Weight (kDa)

9.09

Isoelectric Point (pI)

50.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 205 - 345 7.6e-10 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 211 - 327 4.5e-10 Fungal tetratrico peptide repeats
PPR_3 PF13812 219 - 275 3.2e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 230 - 278 3.5e-13 PPR repeat family
PPR_2 PF13041 301 - 338 1.2e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015042)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03560
fragaria_vesca FvH4_6g17220
malus_domestica MD12G1102800.v1.1
prunus_persica Prupe.7G122900_v2.0.a1
pyrus_communis pycom12g10090
rosa_chinensis RchiOBHm_Chr3g0471301
rosa_laevigata RLG00000024189
rosa_multiflora Rmu_co8050216.1_g000001 Rmu_sc0020748.1_g000002
rosa_roxburghii Rroxscaffold_6G00410090
rosa_rugosa Rorug03G0116900
rosa_samantha Rh3AG166400 Rh3BG191800 Rh3CG182100 Rh3DG183900
rosa_wichuraiana Rw3G015660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 17, 297
AciI CCGC 5 cut(s) 5, 114, 275, 292, 437
AcoI YGGCCR 1 cut(s) 670
AcuI CTGAAG 2 cut(s) 563, 710
AcyI GRCGYC 1 cut(s) 197
AfaI GTAC 1 cut(s) 650
AfiI CCNNNNNNNGG 3 cut(s) 171, 392, 439
AgsI TTSAA 4 cut(s) 357, 406, 622, 718
AjiI CACGTC 1 cut(s) 47
AluBI AGCT 3 cut(s) 140, 283, 496
AluI AGCT 3 cut(s) 140, 283, 496
Alw21I GWGCWC 1 cut(s) 498
Alw26I GTCTC 3 cut(s) 17, 183, 308
AlwNI CAGNNNCTG 1 cut(s) 317
Ama87I CYCGRG 1 cut(s) 566
AoxI GGCC 2 cut(s) 367, 670
ApeKI GCWGC 1 cut(s) 29
AspLEI GCGC 1 cut(s) 297
AsuC2I CCSGG 1 cut(s) 387
AsuHPI GGTGA 1 cut(s) 27
AvaI CYCGRG 1 cut(s) 566
BanII GRGCYC 1 cut(s) 498
BbsI GAAGAC 3 cut(s) 150, 227, 579
Bbv12I GWGCWC 1 cut(s) 498
BbvI GCAGC 1 cut(s) 16
BccI CCATC 2 cut(s) 58, 579
BceAI ACGGC 4 cut(s) 127, 210, 227, 657
BciVI GTATCC 1 cut(s) 436
BcnI CCSGG 1 cut(s) 387
BcoDI GTCTC 3 cut(s) 17, 183, 308
BfmI CTRYAG 1 cut(s) 225
BfuI GTATCC 1 cut(s) 436
BisI GCNGC 3 cut(s) 30, 115, 293
BlsI GCNGC 3 cut(s) 31, 116, 294
Bme1390I CCNGG 1 cut(s) 387
BmeT110I CYCGRG 1 cut(s) 566
BmgBI CACGTC 1 cut(s) 47
BmrFI CCNGG 1 cut(s) 387
BpiI GAAGAC 3 cut(s) 150, 227, 579
BplI GAGNNNNNCTC 2 cut(s) 221, 253
BpuMI CCSGG 1 cut(s) 387
BsaAI YACGTR 1 cut(s) 287
BsaHI GRCGYC 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 64
BsaWI WCCGGW 1 cut(s) 264
Bsc4I CCNNNNNNNGG 3 cut(s) 171, 392, 439
BseDI CCNNGG 1 cut(s) 64
BseGI GGATG 1 cut(s) 590
BseLI CCNNNNNNNGG 3 cut(s) 171, 392, 439
BseMII CTCAG 2 cut(s) 93, 99
BseX3I CGGCCG 1 cut(s) 670
BseXI GCAGC 1 cut(s) 16
BseYI CCCAGC 1 cut(s) 433
Bsh1236I CGCG 2 cut(s) 17, 297
Bsh1285I CGRYCG 1 cut(s) 673
BshFI GGCC 2 cut(s) 369, 672
BsiEI CGRYCG 1 cut(s) 673
BsiHKAI GWGCWC 1 cut(s) 498
BsiHKCI CYCGRG 1 cut(s) 566
BsiSI CCGG 3 cut(s) 265, 278, 387
BslI CCNNNNNNNGG 3 cut(s) 171, 392, 439
BsmAI GTCTC 3 cut(s) 17, 183, 308
BsmBI CGTCTC 2 cut(s) 17, 183
BsmI GAATGC 1 cut(s) 352
BsnI GGCC 2 cut(s) 369, 672
BsoBI CYCGRG 1 cut(s) 566
Bsp1286I GDGCHC 1 cut(s) 498
Bsp143I GATC 3 cut(s) 596, 657, 709
Bsp68I TCGCGA 1 cut(s) 17
BspACI CCGC 5 cut(s) 5, 114, 275, 292, 437
BspANI GGCC 2 cut(s) 369, 672
BspCNI CTCAG 2 cut(s) 92, 98
BspFNI CGCG 2 cut(s) 17, 297
BssECI CCNNGG 1 cut(s) 64
BssMI GATC 3 cut(s) 596, 657, 709
BssNI GRCGYC 1 cut(s) 197
Bst6I CTCTTC 2 cut(s) 200, 585
BstACI GRCGYC 1 cut(s) 197
BstBAI YACGTR 1 cut(s) 287
BstDEI CTNAG 2 cut(s) 79, 85
BstF5I GGATG 1 cut(s) 590
BstFNI CGCG 2 cut(s) 17, 297
BstHHI GCGC 1 cut(s) 297
BstKTI GATC 3 cut(s) 599, 660, 712
BstMAI GTCTC 3 cut(s) 17, 183, 308
BstMBI GATC 3 cut(s) 596, 657, 709
BstMCI CGRYCG 1 cut(s) 673
BstMWI GCNNNNNNNGC 2 cut(s) 289, 434
BstSCI CCNGG 1 cut(s) 385
BstSFI CTRYAG 1 cut(s) 225
BstUI CGCG 2 cut(s) 17, 297
BstV1I GCAGC 1 cut(s) 16
BstV2I GAAGAC 3 cut(s) 150, 227, 579
BstZI CGGCCG 1 cut(s) 670
BsuI GTATCC 1 cut(s) 436
BsuRI GGCC 2 cut(s) 369, 672
BtrI CACGTC 1 cut(s) 47
BtsCI GGATG 1 cut(s) 590
BtsIMutI CAGTG 1 cut(s) 539
BtuMI TCGCGA 1 cut(s) 17
CaiI CAGNNNCTG 1 cut(s) 317
CfoI GCGC 1 cut(s) 297
CseI GACGC 3 cut(s) 21, 186, 260
Csp6I GTAC 1 cut(s) 649
CviAII CATG 3 cut(s) 260, 552, 637
CviJI RGCY 7 cut(s) 29, 83, 140, 283, 369, 496, 672
CviKI_1 RGCY 7 cut(s) 29, 83, 140, 283, 369, 496, 672
CviQI GTAC 1 cut(s) 649
DdeI CTNAG 2 cut(s) 79, 85
DpnI GATC 3 cut(s) 598, 659, 711
DpnII GATC 3 cut(s) 596, 657, 709
EaeI YGGCCR 1 cut(s) 670
EagI CGGCCG 1 cut(s) 670
Eam1104I CTCTTC 2 cut(s) 200, 585
EarI CTCTTC 2 cut(s) 200, 585
Ecl136II GAGCTC 1 cut(s) 496
EclXI CGGCCG 1 cut(s) 670
Eco24I GRGCYC 1 cut(s) 498
Eco32I GATATC 1 cut(s) 91
Eco52I CGGCCG 1 cut(s) 670
Eco53kI GAGCTC 1 cut(s) 496
Eco57I CTGAAG 2 cut(s) 563, 710
Eco88I CYCGRG 1 cut(s) 566
EcoICRI GAGCTC 1 cut(s) 496
EcoRV GATATC 1 cut(s) 91
EcoT38I GRGCYC 1 cut(s) 498
Esp3I CGTCTC 2 cut(s) 17, 183
FaeI CATG 3 cut(s) 263, 555, 640
FaiI YATR 6 cut(s) 261, 323, 349, 414, 553, 638
FatI CATG 3 cut(s) 259, 551, 636
FauI CCCGC 1 cut(s) 282
Fnu4HI GCNGC 3 cut(s) 30, 115, 293
FokI GGATG 1 cut(s) 597
FriOI GRGCYC 1 cut(s) 498
Fsp4HI GCNGC 3 cut(s) 30, 115, 293
GlaI GCGC 1 cut(s) 296
GluI GCNGC 3 cut(s) 30, 115, 293
GsaI CCCAGC 1 cut(s) 437
HaeIII GGCC 2 cut(s) 369, 672
HapII CCGG 3 cut(s) 265, 278, 387
HgaI GACGC 3 cut(s) 21, 186, 260
HhaI GCGC 1 cut(s) 297
Hin1I GRCGYC 1 cut(s) 197
Hin1II CATG 3 cut(s) 263, 555, 640
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HinfI GANTC 1 cut(s) 457
HpaII CCGG 3 cut(s) 265, 278, 387
HphI GGTGA 1 cut(s) 27
Hpy188I TCNGA 7 cut(s) 68, 88, 127, 313, 456, 601, 657
Hpy188III TCNNGA 4 cut(s) 16, 182, 482, 582
HpyAV CCTTC 1 cut(s) 359
HpyCH4IV ACGT 3 cut(s) 46, 286, 330
HpyF10VI GCNNNNNNNGC 2 cut(s) 289, 434
HpyF3I CTNAG 2 cut(s) 79, 85
HpySE526I ACGT 3 cut(s) 46, 286, 330
Hsp92I GRCGYC 1 cut(s) 197
Hsp92II CATG 3 cut(s) 263, 555, 640
HspAI GCGC 1 cut(s) 295
Kzo9I GATC 3 cut(s) 596, 657, 709
LmnI GCTCC 3 cut(s) 280, 484, 493
LpnPI CCDG 5 cut(s) 278, 291, 400, 447, 631
Lsp1109I GCAGC 1 cut(s) 16
MaeII ACGT 3 cut(s) 46, 286, 330
MaeIII GTNAC 2 cut(s) 33, 42
MalI GATC 3 cut(s) 598, 659, 711
MboI GATC 3 cut(s) 596, 657, 709
MboII GAAGA 8 cut(s) 150, 217, 229, 232, 374, 556, 584, 602
MhlI GDGCHC 1 cut(s) 498
MluCI AATT 1 cut(s) 617
MseI TTAA 2 cut(s) 108, 462
MspA1I CMGCKG 1 cut(s) 437
MspI CCGG 3 cut(s) 265, 278, 387
MspR9I CCNGG 1 cut(s) 387
Mva1269I GAATGC 1 cut(s) 352
MvnI CGCG 2 cut(s) 17, 297
MwoI GCNNNNNNNGC 2 cut(s) 289, 434
NciI CCSGG 1 cut(s) 387
NdeII GATC 3 cut(s) 596, 657, 709
NlaIII CATG 3 cut(s) 263, 555, 640
NmuCI GTSAC 2 cut(s) 33, 42
NruI TCGCGA 1 cut(s) 17
PaeR7I CTCGAG 1 cut(s) 566
PcsI WCGNNNNNNNCGW 1 cut(s) 200
PctI GAATGC 1 cut(s) 352
PfeI GAWTC 1 cut(s) 457
PflFI GACNNNGTC 2 cut(s) 196, 254
PkrI GCNGC 3 cut(s) 31, 116, 294
Ppu21I YACGTR 1 cut(s) 287
Psp124BI GAGCTC 1 cut(s) 498
PspFI CCCAGC 1 cut(s) 433
PspXI VCTCGAGB 1 cut(s) 566
PstNI CAGNNNCTG 1 cut(s) 317
PsyI GACNNNGTC 2 cut(s) 196, 254
RruI TCGCGA 1 cut(s) 17
RsaI GTAC 1 cut(s) 650
RsaNI GTAC 1 cut(s) 649
SacI GAGCTC 1 cut(s) 498
SaqAI TTAA 2 cut(s) 108, 462
SatI GCNGC 3 cut(s) 30, 115, 293
Sau3AI GATC 3 cut(s) 596, 657, 709
ScrFI CCNGG 1 cut(s) 387
SduI GDGCHC 1 cut(s) 498
SfcI CTRYAG 1 cut(s) 225
Sfr274I CTCGAG 1 cut(s) 566
SlaI CTCGAG 1 cut(s) 566
SmlI CTYRAG 1 cut(s) 566
SmoI CTYRAG 1 cut(s) 566
Sse9I AATT 1 cut(s) 617
SsiI CCGC 5 cut(s) 5, 114, 275, 292, 437
SstI GAGCTC 1 cut(s) 498
StyD4I CCNGG 1 cut(s) 385
TaiI ACGT 3 cut(s) 49, 289, 333
TaqI TCGA 3 cut(s) 203, 336, 567
TasI AATT 1 cut(s) 617
TauI GCSGC 2 cut(s) 117, 295
TfiI GAWTC 1 cut(s) 457
Tru1I TTAA 2 cut(s) 108, 462
Tru9I TTAA 2 cut(s) 108, 462
TscAI CASTG 1 cut(s) 546
TseFI GTSAC 2 cut(s) 33, 42
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 2 cut(s) 33, 42
TspDTI ATGAA 2 cut(s) 87, 575
TspRI CASTG 1 cut(s) 546
Tth111I GACNNNGTC 2 cut(s) 196, 254
XhoI CTCGAG 1 cut(s) 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.