Rorug03G0116900

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0015042
Physical Location & Seq
Reverse (-)
9505857 .. 9506922
1066 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0116900.1

Sequence Viewer

Length: 444 bp
ATGAAGCAGTATCTTTCGGATATAGGTGTCTCTGAAACACTTCATACAGAGATTCTCGATAAGTTGTTCCCGGTGATTGACGCTGCCGAGACCTACGAGGTGCCTATTCTTTTGGCCATATTCGAGGGTATTTACCGGAGGGATAGTGATGAGATCTTGAGTTTCACTCCTACAGCTGAATCTGCAATCGAGGGTTTGGAGAAGGTGAGACTTGATGCTGCCATTATTGGACAATCACCGATGTGTGCTATATGTTGGAAGGATTTTGCACCCGAAGATGTTGGTCAGCTGATGGTTACTCGCATGCCCTGCTCACACTGTTATCACGGAGATTGCATTGTCCGCTGGCTGAGCATTAATCATCGATGTCCCATGTGCCGATTCCCGATGCCAGTGGACACCCAGCCATCATCATCGAATCCCCAGAGTCCTCCTCCTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1992

Protein Analysis

147

Amino Acids

16.47

Weight (kDa)

4.73

Isoelectric Point (pI)

63.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 75 - 127 2.8e-07 RING-H2 zinc finger domain
zf-RING_2 PF13639 81 - 127 2.6e-12 Ring finger domain
zf-RING_11 PF17123 82 - 113 3.7e-08 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015042)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03560
fragaria_vesca FvH4_6g17220
malus_domestica MD12G1102800.v1.1
prunus_persica Prupe.7G122900_v2.0.a1
pyrus_communis pycom12g10090
rosa_chinensis RchiOBHm_Chr3g0471301
rosa_laevigata RLG00000024189
rosa_multiflora Rmu_co8050216.1_g000001 Rmu_sc0020748.1_g000002
rosa_roxburghii Rroxscaffold_6G00410090
rosa_rugosa Rorug03G0116900
rosa_samantha Rh3AG166400 Rh3BG191800 Rh3CG182100 Rh3DG183900
rosa_wichuraiana Rw3G015660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 100
AciI CCGC 1 cut(s) 343
AcoI YGGCCR 1 cut(s) 114
AleI CACNNNNGTG 1 cut(s) 241
AluBI AGCT 2 cut(s) 176, 289
AluI AGCT 2 cut(s) 176, 289
Alw26I GTCTC 3 cut(s) 34, 83, 202
AoxI GGCC 1 cut(s) 114
ApeKI GCWGC 2 cut(s) 83, 218
AseI ATTAAT 1 cut(s) 357
Asp700I GAANNNNTTC 1 cut(s) 39
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 3 cut(s) 85, 217, 228
BalI TGGCCA 1 cut(s) 116
BanI GGYRCC 1 cut(s) 100
BbvI GCAGC 2 cut(s) 70, 205
BccI CCATC 2 cut(s) 286, 415
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 3 cut(s) 34, 83, 202
BfmI CTRYAG 1 cut(s) 171
BglII AGATCT 1 cut(s) 153
BisI GCNGC 2 cut(s) 84, 219
BlpI GCTNAGC 1 cut(s) 350
BlsI GCNGC 2 cut(s) 85, 220
Bme1390I CCNGG 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 71
BmsI GCATC 2 cut(s) 205, 378
BplI GAGNNNNNCTC 3 cut(s) 151, 183, 418
Bpu1102I GCTNAGC 1 cut(s) 350
BpuEI CTTGAG 1 cut(s) 178
BpuMI CCSGG 1 cut(s) 71
Bsa29I ATCGAT 1 cut(s) 364
BsaI GGTCTC 1 cut(s) 83
BsaWI WCCGGW 1 cut(s) 135
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bse1I ACTGG 1 cut(s) 392
BseCI ATCGAT 1 cut(s) 364
BseMII CTCAG 1 cut(s) 341
BseNI ACTGG 1 cut(s) 392
BseRI GAGGAG 1 cut(s) 423
BseXI GCAGC 2 cut(s) 70, 205
BseYI CCCAGC 1 cut(s) 402
BshFI GGCC 1 cut(s) 116
BshNI GGYRCC 1 cut(s) 100
BshVI ATCGAT 1 cut(s) 364
BsiSI CCGG 2 cut(s) 71, 136
BslFI GGGAC 1 cut(s) 354
BsmAI GTCTC 3 cut(s) 34, 83, 202
BsmFI GGGAC 1 cut(s) 354
BsnI GGCC 1 cut(s) 116
Bso31I GGTCTC 1 cut(s) 83
Bsp143I GATC 1 cut(s) 153
Bsp1720I GCTNAGC 1 cut(s) 350
BspACI CCGC 1 cut(s) 343
BspANI GGCC 1 cut(s) 116
BspCNI CTCAG 1 cut(s) 342
BspDI ATCGAT 1 cut(s) 364
BspLI GGNNCC 1 cut(s) 102
BspT107I GGYRCC 1 cut(s) 100
BspTNI GGTCTC 1 cut(s) 83
BsrI ACTGG 1 cut(s) 392
BssMI GATC 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 320
BstAPI GCANNNNNTGC 1 cut(s) 309
BstC8I GCNNGC 2 cut(s) 305, 347
BstDEI CTNAG 1 cut(s) 350
BstKTI GATC 1 cut(s) 156
BstMAI GTCTC 3 cut(s) 34, 83, 202
BstMBI GATC 1 cut(s) 153
BstMWI GCNNNNNNNGC 4 cut(s) 182, 309, 342, 351
BstNSI RCATGY 1 cut(s) 307
BstSCI CCNGG 1 cut(s) 69
BstSFI CTRYAG 1 cut(s) 171
BstV1I GCAGC 2 cut(s) 70, 205
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
Bsu15I ATCGAT 1 cut(s) 364
BsuRI GGCC 1 cut(s) 116
BsuTUI ATCGAT 1 cut(s) 364
BtsIMutI CAGTG 2 cut(s) 316, 399
Cac8I GCNNGC 2 cut(s) 305, 347
ClaI ATCGAT 1 cut(s) 364
CseI GACGC 1 cut(s) 89
CviAII CATG 2 cut(s) 304, 373
CviJI RGCY 5 cut(s) 116, 176, 289, 349, 406
CviKI_1 RGCY 5 cut(s) 116, 176, 289, 349, 406
DdeI CTNAG 1 cut(s) 350
DpnI GATC 1 cut(s) 155
DpnII GATC 1 cut(s) 153
EaeI YGGCCR 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 83
FaeI CATG 2 cut(s) 307, 376
FaiI YATR 7 cut(s) 23, 45, 119, 251, 253, 305, 374
FaqI GGGAC 1 cut(s) 354
FatI CATG 2 cut(s) 303, 372
Fnu4HI GCNGC 2 cut(s) 84, 219
Fsp4HI GCNGC 2 cut(s) 84, 219
GluI GCNGC 2 cut(s) 84, 219
GsaI CCCAGC 1 cut(s) 406
HaeIII GGCC 1 cut(s) 116
HapII CCGG 2 cut(s) 71, 136
HgaI GACGC 1 cut(s) 89
Hin1II CATG 2 cut(s) 307, 376
HinfI GANTC 5 cut(s) 52, 179, 381, 418, 427
HpaII CCGG 2 cut(s) 71, 136
HphI GGTGA 3 cut(s) 85, 217, 228
Hpy166II GTNNAC 1 cut(s) 397
Hpy188I TCNGA 2 cut(s) 19, 34
Hpy188III TCNNGA 3 cut(s) 56, 157, 385
Hpy8I GTNNAC 1 cut(s) 397
HpyAV CCTTC 2 cut(s) 196, 253
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4V TGCA 3 cut(s) 185, 269, 336
HpyF10VI GCNNNNNNNGC 4 cut(s) 182, 309, 342, 351
HpyF3I CTNAG 1 cut(s) 350
Hsp92II CATG 2 cut(s) 307, 376
Kzo9I GATC 1 cut(s) 153
LpnPI CCDG 7 cut(s) 84, 149, 322, 331, 405, 416, 437
Lsp1109I GCAGC 2 cut(s) 70, 205
LweI GCATC 2 cut(s) 205, 378
MaeIII GTNAC 1 cut(s) 295
MalI GATC 1 cut(s) 155
MboI GATC 1 cut(s) 153
MboII GAAGA 1 cut(s) 287
MflI RGATCY 1 cut(s) 153
MlsI TGGCCA 1 cut(s) 116
MluCI AATT 1 cut(s) 439
MluNI TGGCCA 1 cut(s) 116
MlyI GAGTC 1 cut(s) 436
MmeI TCCRAC 1 cut(s) 236
MnlI CCTC 6 cut(s) 91, 118, 132, 184, 441, 444
Mox20I TGGCCA 1 cut(s) 116
MroXI GAANNNNTTC 1 cut(s) 39
MscI TGGCCA 1 cut(s) 116
MseI TTAA 2 cut(s) 357, 442
MslI CAYNNNNRTG 1 cut(s) 241
Msp20I TGGCCA 1 cut(s) 116
MspA1I CMGCKG 3 cut(s) 176, 289, 345
MspI CCGG 2 cut(s) 71, 136
MspR9I CCNGG 1 cut(s) 71
MwoI GCNNNNNNNGC 4 cut(s) 182, 309, 342, 351
NciI CCSGG 1 cut(s) 71
NdeII GATC 1 cut(s) 153
NlaIII CATG 2 cut(s) 307, 376
NlaIV GGNNCC 1 cut(s) 102
NmeAIII GCCGAG 1 cut(s) 112
NspI RCATGY 1 cut(s) 307
OliI CACNNNNGTG 1 cut(s) 241
PaeI GCATGC 1 cut(s) 307
PdmI GAANNNNTTC 1 cut(s) 39
PfeI GAWTC 4 cut(s) 52, 179, 381, 418
PkrI GCNGC 2 cut(s) 85, 220
PleI GAGTC 1 cut(s) 435
PpsI GAGTC 1 cut(s) 435
PshBI ATTAAT 1 cut(s) 357
PspFI CCCAGC 1 cut(s) 402
PspN4I GGNNCC 1 cut(s) 102
PsuI RGATCY 1 cut(s) 153
PvuII CAGCTG 2 cut(s) 176, 289
RseI CAYNNNNRTG 1 cut(s) 241
SaqAI TTAA 2 cut(s) 357, 442
SatI GCNGC 2 cut(s) 84, 219
Sau3AI GATC 1 cut(s) 153
SchI GAGTC 1 cut(s) 436
ScrFI CCNGG 1 cut(s) 71
SetI ASST 6 cut(s) 28, 95, 102, 178, 207, 291
SfaNI GCATC 2 cut(s) 205, 378
SfcI CTRYAG 1 cut(s) 171
SmiMI CAYNNNNRTG 1 cut(s) 241
SmlI CTYRAG 1 cut(s) 157
SmoI CTYRAG 1 cut(s) 157
SphI GCATGC 1 cut(s) 307
Sse9I AATT 1 cut(s) 439
SsiI CCGC 1 cut(s) 343
StyD4I CCNGG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 320
TaqI TCGA 5 cut(s) 57, 123, 189, 364, 416
TasI AATT 1 cut(s) 439
TfiI GAWTC 4 cut(s) 52, 179, 381, 418
Tru1I TTAA 2 cut(s) 357, 442
Tru9I TTAA 2 cut(s) 357, 442
TscAI CASTG 2 cut(s) 323, 399
TseI GCWGC 2 cut(s) 83, 218
TspDTI ATGAA 2 cut(s) 17, 32
TspGWI ACGGA 1 cut(s) 342
TspRI CASTG 2 cut(s) 323, 399
VspI ATTAAT 1 cut(s) 357
XceI RCATGY 1 cut(s) 307
XmnI GAANNNNTTC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.