Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020748.1

Orthogroup ID

OG0015042

Physical Location & Seq

Genomic Coordinates Reverse (-)

2267 .. 2506

Gene Structure 240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020748.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ctgaacaaagagatcaggagtcaggcggcggaatggaggagggctctgaagaaagcttgggagaagagaaatggtgatggagatcaggagaaatgggtggagacttgtgaggctttgaaagtgcagttgttgcagattaataacaaggttttggagtataatctgattgttccttttgggcgccaaatgtttggaatcaagtgggagaaggagctggatggtatggaaatgaaagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1992

Protein Analysis

79

Amino Acids

9.44

Weight (kDa)

8.05

Isoelectric Point (pI)

40.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03560
fragaria_vesca	FvH4_6g17220
malus_domestica	MD12G1102800.v1.1
prunus_persica	Prupe.7G122900_v2.0.a1
pyrus_communis	pycom12g10090
rosa_chinensis	RchiOBHm_Chr3g0471301
rosa_laevigata	RLG00000024189
rosa_multiflora	Rmu_co8050216.1_g000001 Rmu_sc0020748.1_g000002
rosa_roxburghii	Rroxscaffold_6G00410090
rosa_rugosa	Rorug03G0116900
rosa_samantha	Rh3AG166400 Rh3BG191800 Rh3CG182100 Rh3DG183900
rosa_wichuraiana	Rw3G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	180
AciI	CCGC	2 cut(s)	26, 29
AcuI	CTGAAG	1 cut(s)	68
AcyI	GRCGYC	1 cut(s)	181
AgsI	TTSAA	1 cut(s)	118
AluBI	AGCT	2 cut(s)	56, 214
AluI	AGCT	2 cut(s)	56, 214
Alw26I	GTCTC	1 cut(s)	95
AseI	ATTAAT	1 cut(s)	138
AspLEI	GCGC	1 cut(s)	183
AsuHPI	GGTGA	1 cut(s)	86
BanI	GGYRCC	1 cut(s)	180
BanII	GRGCYC	1 cut(s)	46
BccI	CCATC	2 cut(s)	71, 212
BcoDI	GTCTC	1 cut(s)	95
BfoI	RGCGCY	1 cut(s)	184
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
BmiI	GGNNCC	1 cut(s)	182
BplI	GAGNNNNNCTC	2 cut(s)	28, 60
BsaBI	GATNNNNATC	1 cut(s)	81
BsaHI	GRCGYC	1 cut(s)	181
Bse8I	GATNNNNATC	1 cut(s)	81
BseGI	GGATG	1 cut(s)	223
BseJI	GATNNNNATC	1 cut(s)	81
BseRI	GAGGAG	1 cut(s)	52
BsgI	GTGCAG	1 cut(s)	143
BshNI	GGYRCC	1 cut(s)	180
BsmAI	GTCTC	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	2 cut(s)	12, 82
BspACI	CCGC	2 cut(s)	26, 29
BspLI	GGNNCC	1 cut(s)	182
BspT107I	GGYRCC	1 cut(s)	180
BssMI	GATC	2 cut(s)	12, 82
BssNI	GRCGYC	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	59
BstACI	GRCGYC	1 cut(s)	181
BstAPI	GCANNNNNTGC	1 cut(s)	130
BstF5I	GGATG	1 cut(s)	223
BstH2I	RGCGCY	1 cut(s)	184
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	2 cut(s)	15, 85
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	2 cut(s)	12, 82
BstMWI	GCNNNNNNNGC	1 cut(s)	130
BstXI	CCANNNNNNTGG	1 cut(s)	191
BtsCI	GGATG	1 cut(s)	223
CfoI	GCGC	1 cut(s)	183
CviJI	RGCY	4 cut(s)	44, 56, 113, 214
CviKI_1	RGCY	4 cut(s)	44, 56, 113, 214
DinI	GGCGCC	1 cut(s)	182
DpnI	GATC	2 cut(s)	14, 84
DpnII	GATC	2 cut(s)	12, 82
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
EciI	GGCGGA	1 cut(s)	44
Eco24I	GRGCYC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	68
EcoT38I	GRGCYC	1 cut(s)	46
EgeI	GGCGCC	1 cut(s)	182
EheI	GGCGCC	1 cut(s)	182
FaiI	YATR	2 cut(s)	159, 224
Fnu4HI	GCNGC	1 cut(s)	27
FokI	GGATG	1 cut(s)	230
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	1 cut(s)	27
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	1 cut(s)	27
HaeII	RGCGCY	1 cut(s)	184
HhaI	GCGC	1 cut(s)	183
Hin1I	GRCGYC	1 cut(s)	181
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HindIII	AAGCTT	1 cut(s)	54
HinfI	GANTC	2 cut(s)	19, 195
HphI	GGTGA	1 cut(s)	86
Hpy188I	TCNGA	2 cut(s)	48, 165
Hpy188III	TCNNGA	2 cut(s)	16, 86
HpyAV	CCTTC	1 cut(s)	202
HpyCH4V	TGCA	2 cut(s)	124, 133
HpyF10VI	GCNNNNNNNGC	1 cut(s)	130
Hsp92I	GRCGYC	1 cut(s)	181
HspAI	GCGC	1 cut(s)	181
KasI	GGCGCC	1 cut(s)	180
Kzo9I	GATC	2 cut(s)	12, 82
LmnI	GCTCC	1 cut(s)	211
LpnPI	CCDG	3 cut(s)	8, 71, 200
MalI	GATC	2 cut(s)	14, 84
MboI	GATC	2 cut(s)	12, 82
MboII	GAAGA	2 cut(s)	61, 76
MhlI	GDGCHC	1 cut(s)	46
Mly113I	GGCGCC	1 cut(s)	181
MlyI	GAGTC	1 cut(s)	28
MnlI	CCTC	3 cut(s)	30, 33, 103
MseI	TTAA	1 cut(s)	138
MwoI	GCNNNNNNNGC	1 cut(s)	130
NarI	GGCGCC	1 cut(s)	181
NdeII	GATC	2 cut(s)	12, 82
NlaIV	GGNNCC	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	195
PkrI	GCNGC	1 cut(s)	28
PleI	GAGTC	1 cut(s)	27
PluTI	GGCGCC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	27
PshBI	ATTAAT	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	182
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	2 cut(s)	12, 82
SchI	GAGTC	1 cut(s)	28
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	3 cut(s)	58, 150, 216
SfoI	GGCGCC	1 cut(s)	182
SgeI	CNNG	8 cut(s)	28, 35, 69, 98, 117, 157, 211, 227
SsiI	CCGC	2 cut(s)	26, 29
SspDI	GGCGCC	1 cut(s)	180
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	195
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
VspI	ATTAAT	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.