Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8050216.1

Orthogroup ID

OG0015042

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 543

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8050216.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 229 bp

ctgaacaaagagatcaggagtcaggcggcggaatggaggagggctctgaagaaagcttgggagatgagaaatggtgatggagatcaggagaaatgggtggagacttgtgaggctttgaaattgcagttgaagcagattaataacaaggttttggagtataatgactataatctgattgttccttttgggcgccaaatgtttggaatcaagtgggagaaggagctggatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1992

Protein Analysis

76

Amino Acids

9.16

Weight (kDa)

8.05

Isoelectric Point (pI)

38.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03560
fragaria_vesca	FvH4_6g17220
malus_domestica	MD12G1102800.v1.1
prunus_persica	Prupe.7G122900_v2.0.a1
pyrus_communis	pycom12g10090
rosa_chinensis	RchiOBHm_Chr3g0471301
rosa_laevigata	RLG00000024189
rosa_multiflora	Rmu_co8050216.1_g000001 Rmu_sc0020748.1_g000002
rosa_roxburghii	Rroxscaffold_6G00410090
rosa_rugosa	Rorug03G0116900
rosa_samantha	Rh3AG166400 Rh3BG191800 Rh3CG182100 Rh3DG183900
rosa_wichuraiana	Rw3G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	189
AciI	CCGC	2 cut(s)	26, 29
AcuI	CTGAAG	1 cut(s)	68
AcyI	GRCGYC	1 cut(s)	190
AgsI	TTSAA	2 cut(s)	118, 130
AluBI	AGCT	2 cut(s)	56, 223
AluI	AGCT	2 cut(s)	56, 223
Alw26I	GTCTC	1 cut(s)	95
AseI	ATTAAT	1 cut(s)	138
AspLEI	GCGC	1 cut(s)	192
AsuHPI	GGTGA	1 cut(s)	86
BanI	GGYRCC	1 cut(s)	189
BanII	GRGCYC	1 cut(s)	46
BccI	CCATC	1 cut(s)	71
BcoDI	GTCTC	1 cut(s)	95
BfoI	RGCGCY	1 cut(s)	193
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
BmiI	GGNNCC	1 cut(s)	191
BplI	GAGNNNNNCTC	2 cut(s)	28, 60
BsaBI	GATNNNNATC	1 cut(s)	81
BsaHI	GRCGYC	1 cut(s)	190
Bse8I	GATNNNNATC	1 cut(s)	81
BseJI	GATNNNNATC	1 cut(s)	81
BseRI	GAGGAG	1 cut(s)	52
BshNI	GGYRCC	1 cut(s)	189
BsmAI	GTCTC	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	2 cut(s)	12, 82
BspACI	CCGC	2 cut(s)	26, 29
BspLI	GGNNCC	1 cut(s)	191
BspT107I	GGYRCC	1 cut(s)	189
BssMI	GATC	2 cut(s)	12, 82
BssNI	GRCGYC	1 cut(s)	190
BstACI	GRCGYC	1 cut(s)	190
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	2 cut(s)	15, 85
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	2 cut(s)	12, 82
BstMWI	GCNNNNNNNGC	1 cut(s)	130
BstXI	CCANNNNNNTGG	1 cut(s)	200
CfoI	GCGC	1 cut(s)	192
CviJI	RGCY	4 cut(s)	44, 56, 113, 223
CviKI_1	RGCY	4 cut(s)	44, 56, 113, 223
DinI	GGCGCC	1 cut(s)	191
DpnI	GATC	2 cut(s)	14, 84
DpnII	GATC	2 cut(s)	12, 82
EciI	GGCGGA	1 cut(s)	44
Eco24I	GRGCYC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	68
EcoT38I	GRGCYC	1 cut(s)	46
EgeI	GGCGCC	1 cut(s)	191
EheI	GGCGCC	1 cut(s)	191
FaiI	YATR	2 cut(s)	159, 168
Fnu4HI	GCNGC	1 cut(s)	27
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	1 cut(s)	27
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	1 cut(s)	27
HaeII	RGCGCY	1 cut(s)	193
HhaI	GCGC	1 cut(s)	192
Hin1I	GRCGYC	1 cut(s)	190
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HindIII	AAGCTT	1 cut(s)	54
HinfI	GANTC	2 cut(s)	19, 204
HphI	GGTGA	1 cut(s)	86
Hpy188I	TCNGA	2 cut(s)	48, 174
Hpy188III	TCNNGA	2 cut(s)	16, 86
HpyAV	CCTTC	1 cut(s)	211
HpyCH4V	TGCA	1 cut(s)	124
HpyF10VI	GCNNNNNNNGC	1 cut(s)	130
Hsp92I	GRCGYC	1 cut(s)	190
HspAI	GCGC	1 cut(s)	190
KasI	GGCGCC	1 cut(s)	189
Kzo9I	GATC	2 cut(s)	12, 82
LmnI	GCTCC	1 cut(s)	220
LpnPI	CCDG	3 cut(s)	8, 71, 209
MalI	GATC	2 cut(s)	14, 84
MboI	GATC	2 cut(s)	12, 82
MboII	GAAGA	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	1 cut(s)	119
Mly113I	GGCGCC	1 cut(s)	190
MlyI	GAGTC	1 cut(s)	28
MnlI	CCTC	3 cut(s)	30, 33, 103
MseI	TTAA	1 cut(s)	138
MwoI	GCNNNNNNNGC	1 cut(s)	130
NarI	GGCGCC	1 cut(s)	190
NdeII	GATC	2 cut(s)	12, 82
NlaIV	GGNNCC	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	204
PkrI	GCNGC	1 cut(s)	28
PleI	GAGTC	1 cut(s)	27
PluTI	GGCGCC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	27
PshBI	ATTAAT	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	2 cut(s)	12, 82
SchI	GAGTC	1 cut(s)	28
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	3 cut(s)	58, 150, 225
SfoI	GGCGCC	1 cut(s)	191
SgeI	CNNG	7 cut(s)	28, 35, 69, 98, 117, 157, 220
Sse9I	AATT	1 cut(s)	119
SsiI	CCGC	2 cut(s)	26, 29
SspDI	GGCGCC	1 cut(s)	189
TasI	AATT	1 cut(s)	119
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	204
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
VspI	ATTAAT	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.