FvH4_6g17220

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015042
Physical Location & Seq
Reverse (-)
11190151 .. 11191516
1366 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g17220.t1

Sequence Viewer

Length: 684 bp
ATGGCGACCCGGCTTGCGCGAAGACCAATAGCTTCGTCTTCTCTGTTCCGGAGATCGATGCTCCACGATTCGTCTCTGACGGCGATCGCCGCTGGCCACGGTGGCTCCGAATCGAGGCGGCTTTCGTCGTCGAGAAGCAAATCAGAGAAGCCGGAGAAGAAGAAGCCGCTGGACCGTTTATCGACGATTATAGACGCCGTTAACGAGCGCAAACTCCCTCCTGAGCTCCGCGGTCAGCGTAACACCGTCAGGTCGGAAACCGACATTATCAATGTGGTGGAGCAGAGAATATGGCATTCAATGGAAGAAGGTCAGTTTGAGAACTTGCCAGGGAAAGGAAAACCTCTAGACCTGAGCAGCAACAGCAACCCTCACGCAGACCCGGCAGACGATACATTGTATAGGATTCTCTCGAAGAATGGTTGTGCGCCGCGGTGGGTGGAGCTGAACAAGGAGATCAGGACACAGGCGGCAGAATGGAGGAGGGCTATGAAAAAAGCTTGGGAGAAGAGAAATGGTGAAGGGGGCGAGGAGAGATGGGTGGAGACTAGTGCGGCTTTGAAGGTGCAGATGAAGCAGATTAATAACAAGGTTTTGGAGTATAATCTGATTGTTCCTTTTGGGCGCCAAATGTTTGGAATCAAGTGGGAGAAGGAGCTGGAACGAATGGAGTTGAAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1992

Protein Analysis

228

Amino Acids

26.03

Weight (kDa)

9.79

Isoelectric Point (pI)

52.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DJC28_CD PF09350 92 - 160 5.9e-23 DnaJ homologue, subfamily C, member 28, conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015042)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03560
fragaria_vesca FvH4_6g17220
malus_domestica MD12G1102800.v1.1
prunus_persica Prupe.7G122900_v2.0.a1
pyrus_communis pycom12g10090
rosa_chinensis RchiOBHm_Chr3g0471301
rosa_laevigata RLG00000024189
rosa_multiflora Rmu_co8050216.1_g000001 Rmu_sc0020748.1_g000002
rosa_roxburghii Rroxscaffold_6G00410090
rosa_rugosa Rorug03G0116900
rosa_samantha Rh3AG166400 Rh3BG191800 Rh3CG182100 Rh3DG183900
rosa_wichuraiana Rw3G015660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 624
AccII CGCG 3 cut(s) 19, 231, 433
AccIII TCCGGA 1 cut(s) 48
AciI CCGC 9 cut(s) 90, 118, 167, 229, 231, 431, 433, 470, 554
AcoI YGGCCR 1 cut(s) 94
AcyI GRCGYC 2 cut(s) 195, 625
AfiI CCNNNNNNNGG 2 cut(s) 114, 335
AgsI TTSAA 3 cut(s) 300, 562, 676
AhlI ACTAGT 1 cut(s) 548
AjnI CCWGG 1 cut(s) 328
AluBI AGCT 5 cut(s) 32, 226, 445, 500, 658
AluI AGCT 5 cut(s) 32, 226, 445, 500, 658
Alw21I GWGCWC 1 cut(s) 228
Alw26I GTCTC 2 cut(s) 78, 539
Aor13HI TCCGGA 1 cut(s) 48
AoxI GGCC 1 cut(s) 94
ApeKI GCWGC 1 cut(s) 357
AseI ATTAAT 1 cut(s) 582
AsiSI GCGATCGC 1 cut(s) 87
AspLEI GCGC 4 cut(s) 19, 210, 430, 627
AspS9I GGNCC 1 cut(s) 172
AsuC2I CCSGG 2 cut(s) 10, 383
AsuHPI GGTGA 1 cut(s) 530
AvaII GGWCC 1 cut(s) 172
BalI TGGCCA 1 cut(s) 96
BanI GGYRCC 1 cut(s) 624
BanII GRGCYC 1 cut(s) 228
BbsI GAAGAC 2 cut(s) 28, 30
Bbv12I GWGCWC 1 cut(s) 228
BbvI GCAGC 1 cut(s) 369
BccI CCATC 1 cut(s) 531
BceAI ACGGC 2 cut(s) 96, 182
BciT130I CCWGG 1 cut(s) 330
BcnI CCSGG 2 cut(s) 10, 383
BcoDI GTCTC 2 cut(s) 78, 539
BcuI ACTAGT 1 cut(s) 548
BfaI CTAG 2 cut(s) 347, 549
BfoI RGCGCY 1 cut(s) 628
BglI GCCNNNNNGGC 1 cut(s) 102
BisI GCNGC 7 cut(s) 90, 119, 167, 358, 431, 471, 555
BlsI GCNGC 7 cut(s) 91, 120, 168, 359, 432, 472, 556
Bme1390I CCNGG 3 cut(s) 10, 330, 383
Bme18I GGWCC 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 172
BmiI GGNNCC 2 cut(s) 106, 626
BmrFI CCNGG 3 cut(s) 10, 330, 383
BmsI GCATC 1 cut(s) 48
BpiI GAAGAC 2 cut(s) 28, 30
Bpu10I CCTNAGC 2 cut(s) 222, 353
BpuMI CCSGG 2 cut(s) 10, 383
Bsa29I ATCGAT 1 cut(s) 56
BsaHI GRCGYC 2 cut(s) 195, 625
BsaJI CCNNGG 4 cut(s) 97, 229, 329, 431
BsaWI WCCGGW 1 cut(s) 48
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 2 cut(s) 114, 335
BseAI TCCGGA 1 cut(s) 48
BseBI CCWGG 1 cut(s) 330
BseCI ATCGAT 1 cut(s) 56
BseDI CCNNGG 4 cut(s) 97, 229, 329, 431
BseLI CCNNNNNNNGG 2 cut(s) 114, 335
BseMII CTCAG 2 cut(s) 213, 344
BseRI GAGGAG 2 cut(s) 496, 545
BseXI GCAGC 1 cut(s) 369
BsgI GTGCAG 1 cut(s) 587
Bsh1236I CGCG 3 cut(s) 19, 231, 433
Bsh1285I CGRYCG 1 cut(s) 87
BshFI GGCC 1 cut(s) 96
BshNI GGYRCC 1 cut(s) 624
BshVI ATCGAT 1 cut(s) 56
BsiEI CGRYCG 1 cut(s) 87
BsiHKAI GWGCWC 1 cut(s) 228
BsiSI CCGG 4 cut(s) 10, 49, 152, 383
BslI CCNNNNNNNGG 2 cut(s) 114, 335
BsmAI GTCTC 2 cut(s) 78, 539
BsmBI CGTCTC 1 cut(s) 78
BsmI GAATGC 1 cut(s) 295
BsnI GGCC 1 cut(s) 96
Bsp1286I GDGCHC 1 cut(s) 228
Bsp13I TCCGGA 1 cut(s) 48
Bsp143I GATC 3 cut(s) 53, 84, 456
BspACI CCGC 9 cut(s) 90, 118, 167, 229, 231, 431, 433, 470, 554
BspANI GGCC 1 cut(s) 96
BspCNI CTCAG 2 cut(s) 214, 345
BspDI ATCGAT 1 cut(s) 56
BspEI TCCGGA 1 cut(s) 48
BspFNI CGCG 3 cut(s) 19, 231, 433
BspLI GGNNCC 2 cut(s) 106, 626
BspT107I GGYRCC 1 cut(s) 624
BssECI CCNNGG 4 cut(s) 97, 229, 329, 431
BssMI GATC 3 cut(s) 53, 84, 456
BssNI GRCGYC 2 cut(s) 195, 625
Bst2UI CCWGG 1 cut(s) 330
Bst4CI ACNGT 3 cut(s) 101, 176, 247
Bst6I CTCTTC 1 cut(s) 503
BstACI GRCGYC 2 cut(s) 195, 625
BstC8I GCNNGC 2 cut(s) 15, 94
BstDEI CTNAG 2 cut(s) 222, 353
BstDSI CCRYGG 3 cut(s) 97, 229, 431
BstFNI CGCG 3 cut(s) 19, 231, 433
BstH2I RGCGCY 1 cut(s) 628
BstHHI GCGC 4 cut(s) 19, 210, 430, 627
BstKTI GATC 3 cut(s) 56, 87, 459
BstMAI GTCTC 2 cut(s) 78, 539
BstMBI GATC 3 cut(s) 53, 84, 456
BstMCI CGRYCG 1 cut(s) 87
BstMWI GCNNNNNNNGC 5 cut(s) 89, 102, 363, 383, 574
BstNI CCWGG 1 cut(s) 330
BstSCI CCNGG 3 cut(s) 8, 328, 381
BstUI CGCG 3 cut(s) 19, 231, 433
BstV1I GCAGC 1 cut(s) 369
BstV2I GAAGAC 2 cut(s) 28, 30
BstXI CCANNNNNNTGG 1 cut(s) 635
Bsu15I ATCGAT 1 cut(s) 56
BsuRI GGCC 1 cut(s) 96
BsuTUI ATCGAT 1 cut(s) 56
BtgI CCRYGG 3 cut(s) 97, 229, 431
Cac8I GCNNGC 2 cut(s) 15, 94
CfoI GCGC 4 cut(s) 19, 210, 430, 627
Cfr13I GGNCC 1 cut(s) 172
Cfr42I CCGCGG 2 cut(s) 232, 434
ClaI ATCGAT 1 cut(s) 56
CseI GACGC 1 cut(s) 203
DdeI CTNAG 2 cut(s) 222, 353
DinI GGCGCC 1 cut(s) 626
DpnI GATC 3 cut(s) 55, 86, 458
DpnII GATC 3 cut(s) 53, 84, 456
EaeI YGGCCR 1 cut(s) 94
Eam1104I CTCTTC 1 cut(s) 503
EarI CTCTTC 1 cut(s) 503
Ecl136II GAGCTC 1 cut(s) 226
Eco24I GRGCYC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 172
Eco53kI GAGCTC 1 cut(s) 226
EcoICRI GAGCTC 1 cut(s) 226
EcoRII CCWGG 1 cut(s) 328
EcoT38I GRGCYC 1 cut(s) 228
EgeI GGCGCC 1 cut(s) 626
EheI GGCGCC 1 cut(s) 626
Esp3I CGTCTC 1 cut(s) 78
FaiI YATR 5 cut(s) 191, 292, 402, 491, 603
Fnu4HI GCNGC 7 cut(s) 90, 119, 167, 358, 431, 471, 555
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 7 cut(s) 90, 119, 167, 358, 431, 471, 555
FspBI CTAG 2 cut(s) 347, 549
GlaI GCGC 4 cut(s) 18, 209, 429, 626
GluI GCNGC 7 cut(s) 90, 119, 167, 358, 431, 471, 555
HaeII RGCGCY 1 cut(s) 628
HaeIII GGCC 1 cut(s) 96
HapII CCGG 4 cut(s) 10, 49, 152, 383
HgaI GACGC 1 cut(s) 203
HhaI GCGC 4 cut(s) 19, 210, 430, 627
Hin1I GRCGYC 2 cut(s) 195, 625
Hin6I GCGC 4 cut(s) 17, 208, 428, 625
HinP1I GCGC 4 cut(s) 17, 208, 428, 625
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HindIII AAGCTT 1 cut(s) 498
HinfI GANTC 4 cut(s) 68, 110, 406, 639
HpaI GTTAAC 1 cut(s) 202
HpaII CCGG 4 cut(s) 10, 49, 152, 383
HphI GGTGA 1 cut(s) 530
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 5 cut(s) 78, 109, 145, 256, 609
Hpy188III TCNNGA 6 cut(s) 49, 132, 221, 347, 412, 460
Hpy8I GTNNAC 1 cut(s) 202
Hpy99I CGWCG 3 cut(s) 130, 133, 187
HpyAV CCTTC 4 cut(s) 302, 515, 556, 646
HpyCH4III ACNGT 3 cut(s) 101, 176, 247
HpyCH4V TGCA 1 cut(s) 568
HpyF10VI GCNNNNNNNGC 5 cut(s) 89, 102, 363, 383, 574
HpyF3I CTNAG 2 cut(s) 222, 353
Hsp92I GRCGYC 2 cut(s) 195, 625
HspAI GCGC 4 cut(s) 17, 208, 428, 625
KasI GGCGCC 1 cut(s) 624
Kpn2I TCCGGA 1 cut(s) 48
KspAI GTTAAC 1 cut(s) 202
KspI CCGCGG 2 cut(s) 232, 434
Kzo9I GATC 3 cut(s) 53, 84, 456
LmnI GCTCC 6 cut(s) 66, 110, 231, 280, 442, 655
Lsp1109I GCAGC 1 cut(s) 369
LweI GCATC 1 cut(s) 48
MaeI CTAG 2 cut(s) 347, 549
MaeIII GTNAC 1 cut(s) 239
MalI GATC 3 cut(s) 55, 86, 458
MboI GATC 3 cut(s) 53, 84, 456
MboII GAAGA 7 cut(s) 30, 33, 169, 172, 317, 427, 520
MhlI GDGCHC 1 cut(s) 228
MlsI TGGCCA 1 cut(s) 96
MluNI TGGCCA 1 cut(s) 96
Mly113I GGCGCC 1 cut(s) 625
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 7 cut(s) 108, 228, 354, 381, 474, 477, 523
Mox20I TGGCCA 1 cut(s) 96
MroI TCCGGA 1 cut(s) 48
MscI TGGCCA 1 cut(s) 96
MseI TTAA 2 cut(s) 201, 582
Msp20I TGGCCA 1 cut(s) 96
MspA1I CMGCKG 4 cut(s) 92, 169, 231, 433
MspI CCGG 4 cut(s) 10, 49, 152, 383
MspR9I CCNGG 3 cut(s) 10, 330, 383
Mva1269I GAATGC 1 cut(s) 295
MvaI CCWGG 1 cut(s) 330
MvnI CGCG 3 cut(s) 19, 231, 433
MwoI GCNNNNNNNGC 5 cut(s) 89, 102, 363, 383, 574
NarI GGCGCC 1 cut(s) 625
NciI CCSGG 2 cut(s) 10, 383
NdeII GATC 3 cut(s) 53, 84, 456
NlaIV GGNNCC 2 cut(s) 106, 626
PcsI WCGNNNNNNNCGW 2 cut(s) 105, 201
PctI GAATGC 1 cut(s) 295
PfeI GAWTC 4 cut(s) 68, 110, 406, 639
PkrI GCNGC 7 cut(s) 91, 120, 168, 359, 432, 472, 556
Ple19I CGATCG 1 cut(s) 87
PluTI GGCGCC 1 cut(s) 628
PshBI ATTAAT 1 cut(s) 582
Psp124BI GAGCTC 1 cut(s) 228
Psp6I CCWGG 1 cut(s) 328
PspGI CCWGG 1 cut(s) 328
PspN4I GGNNCC 2 cut(s) 106, 626
PspPI GGNCC 1 cut(s) 172
PvuI CGATCG 1 cut(s) 87
RgaI GCGATCGC 1 cut(s) 87
SacI GAGCTC 1 cut(s) 228
SacII CCGCGG 2 cut(s) 232, 434
SaqAI TTAA 2 cut(s) 201, 582
SatI GCNGC 7 cut(s) 90, 119, 167, 358, 431, 471, 555
Sau3AI GATC 3 cut(s) 53, 84, 456
Sau96I GGNCC 1 cut(s) 172
ScrFI CCNGG 3 cut(s) 10, 330, 383
SduI GDGCHC 1 cut(s) 228
SfaAI GCGATCGC 1 cut(s) 87
SfaNI GCATC 1 cut(s) 48
SfoI GGCGCC 1 cut(s) 626
Sfr303I CCGCGG 2 cut(s) 232, 434
SgfI GCGATCGC 1 cut(s) 87
SgrBI CCGCGG 2 cut(s) 232, 434
SinI GGWCC 1 cut(s) 172
SpeI ACTAGT 1 cut(s) 548
SsiI CCGC 9 cut(s) 90, 118, 167, 229, 231, 431, 433, 470, 554
SspDI GGCGCC 1 cut(s) 624
SspMI CTAG 2 cut(s) 347, 549
SstI GAGCTC 1 cut(s) 228
StyD4I CCNGG 3 cut(s) 8, 328, 381
TaaI ACNGT 3 cut(s) 101, 176, 247
TaqI TCGA 5 cut(s) 56, 113, 131, 182, 413
TauI GCSGC 6 cut(s) 92, 121, 169, 433, 473, 557
TfiI GAWTC 4 cut(s) 68, 110, 406, 639
Tru1I TTAA 2 cut(s) 201, 582
Tru9I TTAA 2 cut(s) 201, 582
TseI GCWGC 1 cut(s) 357
TspDTI ATGAA 2 cut(s) 506, 587
VpaK11BI GGWCC 1 cut(s) 172
VspI ATTAAT 1 cut(s) 582
XbaI TCTAGA 1 cut(s) 346
XspI CTAG 2 cut(s) 347, 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.