AT5G03700

PAN domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013446
Physical Location & Seq
Reverse (-)
965562 .. 967432
1871 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G03700.1

Sequence Viewer

Length: 1449 bp
ATGGAAGGTTTGTGTTTAAACTCTTTCACTCGTGTTTTACTTTTATTGTTCGTTTTCTTGGTTTTTTCTCATAAATGGCAACGAGTCAACGCGGTCGAACCGGTTTTGGAGCTGGTAAAAGGCTTTGAAGCTAAACCGGACTCGTCCATCGACTCGTTCCAGCCTCTCCTCACTGACTCAAACGGTAACTTTTCATTCGGGTTCTTAAGGGTAAACGGGTCACGTCTCTCTCTCGCCGTCACCCACCCAAATTTAACGGATCCACTATGGGTTCTCGACCCGACCCGCTCAGCTAGCTGGTCGCATAAAACGAAACTCTTCTTCAATGGTAGTCTCGTAATTATCGATCCTTCTTCAAGGTTAGAATGGTCAACTCATACTAACGGAGACCGTCTAATCCTCCGTAACGACTCAAATCTTCAAGTGGTGAAAACGTCGACGTTCGTTGAGTGGGAGAGTTTTGATTTTCCCGGAAATACCCTCGTCGAAAGCCAGAATTTCACATCTGCCATGGCTTTGGTTTCACCCAATGGTTTATATTCGATGCGGTTAGGTAGCGATTTCATCGGTTTATACGCTAAAGTCAGCGAAGAGTCTCAACAGTTTTACTGGAAACACAGTGCTCTTCAAGCTAAAGCCAAAGTCAAAGACGGAGCTGGTCCAATTCTCGCTCGGATTAACCCGAATGGTTATCTCGGTATGTACCAAACCGGAAGTATACCAATCGATGTTGAAGCGTTTAATAGTTTTCAAAGACCGGTCAACGGTTTACTAATTCTCCGATTAGAATCCGACGGGAATCTCCGGGGATATCTCTGGGATGGATCTCACTGGGCATTGAATTACGAAGCAATTCGTGAAACTTGTGATCTACCAAATCCGTGTGGTCCGTATAGTCTATGTACTCCCGGATCGGGTTGTTCGTGTATTGATAACAGAACCGTGATCGGAGAGTGTACTCACGCGGCTTCATCACCGGCGGATTTTTGTGATAAGACGACGGAGTTTAAAGTGGTGAGACGTGACGGCGTTGAAGTGCCGTTTAAGGAACTGATGGATCATAAAACGACGTCATCTTTAGGAGAGTGTGAGGAGATGTGTGTGGATAATTGCAAGTGTTTCGGGGCGGTTTACAATAACGGGTCTGGGTTTTGTTATTTGGTTAATTACCCGATTCGGACGATGTTGGGTGTTGCGGATCCGAGTAAATTGGGTTATTTTAAGGTACGTGAAGGTGTAGGGAAGAAAAAGAGTCGAGTAGGATTAACGGTTGGGATGTCTTTGCTTGCTGTGATTGCTTTGGTTTTAATGGTGGCGATGGTTTATGTCGGGTTTAGGAATTGGAGAAGAGAGAAACGGGTACTAGAAGAAGATAATGGGTTATCACCCGGCCCATATAAAAATCTCGGGTCGGATAGTTTTAATTCCGTTGAAATGAGTCGGAGATGA

Protein Analysis

482

Amino Acids

53.59

Weight (kDa)

6.72

Isoelectric Point (pI)

36.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013446)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03700
fragaria_vesca FvH4_6g17930
malus_domestica MD12G1018400.v1.1 MD14G1016400.v1.1
prunus_persica Prupe.7G116800_v2.0.a1
pyrus_communis pycom12g01520 pycom14g01410
rosa_chinensis RchiOBHm_Chr3g0472201
rosa_laevigata RLG00000024098
rosa_multiflora Rmu_sc0002532.1_g000034
rosa_roxburghii Rroxscaffold_6G00409160
rosa_rugosa Rorug03G0122800
rosa_samantha Rh3AG175100 Rh3BG200100 Rh3CG191600 Rh3CG198900 Rh3DG174300
rosa_wichuraiana Rw3G016620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1073
AccBSI CCGCTC 1 cut(s) 288
AccI GTMKAC 2 cut(s) 437, 718
AccII CGCG 2 cut(s) 92, 965
AciI CCGC 7 cut(s) 92, 286, 547, 965, 980, 1127, 1196
AclWI GGATC 8 cut(s) 254, 267, 341, 832, 919, 1065, 1193, 1206
AcsI RAATTY 2 cut(s) 250, 496
AcyI GRCGYC 1 cut(s) 1070
AfaI GTAC 5 cut(s) 704, 904, 958, 1227, 1362
AfiI CCNNNNNNNGG 2 cut(s) 764, 914
AflII CTTAAG 1 cut(s) 205
AgeI ACCGGT 2 cut(s) 100, 757
AjiI CACGTC 2 cut(s) 224, 1022
AluBI AGCT 6 cut(s) 112, 131, 293, 297, 632, 656
AluI AGCT 6 cut(s) 112, 131, 293, 297, 632, 656
Alw21I GWGCWC 1 cut(s) 625
Alw26I GTCTC 5 cut(s) 230, 338, 381, 600, 1012
AlwI GGATC 8 cut(s) 254, 267, 341, 832, 919, 1065, 1193, 1206
Ama87I CYCGRG 1 cut(s) 1406
AoxI GGCC 1 cut(s) 1390
ApoI RAATTY 2 cut(s) 250, 496
AsiGI ACCGGT 2 cut(s) 100, 757
Asp700I GAANNNNTTC 2 cut(s) 317, 852
AspS9I GGNCC 3 cut(s) 659, 887, 1391
AsuC2I CCSGG 4 cut(s) 471, 806, 909, 1389
AsuHPI GGTGA 6 cut(s) 232, 439, 516, 966, 1027, 1377
AsuNHI GCTAGC 1 cut(s) 293
AvaI CYCGRG 1 cut(s) 1406
AvaII GGWCC 2 cut(s) 659, 887
BamHI GGATCC 2 cut(s) 259, 1198
BauI CACGAG 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 625
BccI CCATC 4 cut(s) 155, 815, 1048, 1312
BceAI ACGGC 3 cut(s) 221, 1024, 1042
BcgI CGANNNNNNTGC 2 cut(s) 1102, 1136
BcnI CCSGG 4 cut(s) 471, 806, 909, 1389
BcoDI GTCTC 5 cut(s) 230, 338, 381, 600, 1012
BfaI CTAG 2 cut(s) 294, 1364
BfrI CTTAAG 1 cut(s) 205
BisI GCNGC 1 cut(s) 966
BlpI GCTNAGC 1 cut(s) 289
BlsI GCNGC 1 cut(s) 967
Bme1390I CCNGG 4 cut(s) 471, 806, 909, 1389
Bme18I GGWCC 2 cut(s) 659, 887
BmeT110I CYCGRG 1 cut(s) 1406
BmgBI CACGTC 2 cut(s) 224, 1022
BmgT120I GGNCC 3 cut(s) 659, 887, 1391
BmiI GGNNCC 2 cut(s) 261, 1200
BmrFI CCNGG 4 cut(s) 471, 806, 909, 1389
BmrI ACTGGG 1 cut(s) 841
BmsI GCATC 1 cut(s) 534
BmtI GCTAGC 1 cut(s) 297
BmuI ACTGGG 1 cut(s) 841
Bpu1102I GCTNAGC 1 cut(s) 289
BpuMI CCSGG 4 cut(s) 471, 806, 909, 1389
Bsa29I ATCGAT 2 cut(s) 345, 726
BsaAI YACGTR 1 cut(s) 1229
BsaBI GATNNNNATC 1 cut(s) 787
BsaHI GRCGYC 1 cut(s) 1070
BsaI GGTCTC 1 cut(s) 381
BsaJI CCNNGG 2 cut(s) 510, 805
BsaWI WCCGGW 4 cut(s) 100, 136, 710, 757
BsaXI ACNNNNNCTCC 2 cut(s) 762, 792
Bsc4I CCNNNNNNNGG 2 cut(s) 764, 914
Bse118I RCCGGY 3 cut(s) 100, 757, 976
Bse1I ACTGG 2 cut(s) 614, 836
Bse8I GATNNNNATC 1 cut(s) 787
BseCI ATCGAT 2 cut(s) 345, 726
BseDI CCNNGG 2 cut(s) 510, 805
BseGI GGATG 2 cut(s) 826, 1281
BseJI GATNNNNATC 1 cut(s) 787
BseLI CCNNNNNNNGG 2 cut(s) 764, 914
BseMII CTCAG 1 cut(s) 303
BseNI ACTGG 2 cut(s) 614, 836
BseRI GAGGAG 2 cut(s) 158, 1106
Bsh1236I CGCG 2 cut(s) 92, 965
Bsh1285I CGRYCG 1 cut(s) 96
BshFI GGCC 1 cut(s) 1392
BshTI ACCGGT 2 cut(s) 100, 757
BshVI ATCGAT 2 cut(s) 345, 726
BsiEI CGRYCG 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 625
BsiHKCI CYCGRG 1 cut(s) 1406
BsiSI CCGG 9 cut(s) 101, 137, 471, 711, 758, 805, 909, 977, 1389
BslI CCNNNNNNNGG 2 cut(s) 764, 914
BsmAI GTCTC 5 cut(s) 230, 338, 381, 600, 1012
BsmBI CGTCTC 2 cut(s) 230, 1012
BsnI GGCC 1 cut(s) 1392
Bso31I GGTCTC 1 cut(s) 381
BsoBI CYCGRG 1 cut(s) 1406
Bsp1286I GDGCHC 1 cut(s) 625
Bsp143I GATC 8 cut(s) 259, 346, 824, 868, 911, 945, 1057, 1198
Bsp1720I GCTNAGC 1 cut(s) 289
Bsp19I CCATGG 1 cut(s) 510
BspACI CCGC 7 cut(s) 92, 286, 547, 965, 980, 1127, 1196
BspANI GGCC 1 cut(s) 1392
BspCNI CTCAG 1 cut(s) 302
BspDI ATCGAT 2 cut(s) 345, 726
BspFNI CGCG 2 cut(s) 92, 965
BspLI GGNNCC 2 cut(s) 261, 1200
BspOI GCTAGC 1 cut(s) 297
BspPI GGATC 8 cut(s) 254, 267, 341, 832, 919, 1065, 1193, 1206
BspQI GCTCTTC 1 cut(s) 630
BspTI CTTAAG 1 cut(s) 205
BspTNI GGTCTC 1 cut(s) 381
BsrBI CCGCTC 1 cut(s) 288
BsrFI RCCGGY 3 cut(s) 100, 757, 976
BsrI ACTGG 2 cut(s) 614, 836
BssAI RCCGGY 3 cut(s) 100, 757, 976
BssECI CCNNGG 2 cut(s) 510, 805
BssMI GATC 8 cut(s) 259, 346, 824, 868, 911, 945, 1057, 1198
BssNAI GTATAC 1 cut(s) 719
BssNI GRCGYC 1 cut(s) 1070
BssSI CACGAG 1 cut(s) 30
BssT1I CCWWGG 1 cut(s) 510
Bst1107I GTATAC 1 cut(s) 719
Bst2BI CACGAG 1 cut(s) 30
Bst4CI ACNGT 7 cut(s) 185, 392, 603, 620, 767, 943, 1270
Bst6I CTCTTC 4 cut(s) 323, 585, 630, 1342
BstACI GRCGYC 1 cut(s) 1070
BstAFI CTTAAG 1 cut(s) 205
BstBAI YACGTR 1 cut(s) 1229
BstC8I GCNNGC 2 cut(s) 295, 1287
BstDEI CTNAG 1 cut(s) 289
BstDSI CCRYGG 1 cut(s) 510
BstF5I GGATG 2 cut(s) 826, 1281
BstFNI CGCG 2 cut(s) 92, 965
BstKTI GATC 8 cut(s) 262, 349, 827, 871, 914, 948, 1060, 1201
BstMAI GTCTC 5 cut(s) 230, 338, 381, 600, 1012
BstMBI GATC 8 cut(s) 259, 346, 824, 868, 911, 945, 1057, 1198
BstMCI CGRYCG 1 cut(s) 96
BstMWI GCNNNNNNNGC 3 cut(s) 294, 629, 1295
BstSCI CCNGG 4 cut(s) 469, 804, 907, 1387
BstUI CGCG 2 cut(s) 92, 965
BstX2I RGATCY 3 cut(s) 259, 824, 1198
BstXI CCANNNNNNTGG 1 cut(s) 517
BstYI RGATCY 3 cut(s) 259, 824, 1198
BstZ17I GTATAC 1 cut(s) 719
Bsu15I ATCGAT 2 cut(s) 345, 726
BsuRI GGCC 1 cut(s) 1392
BsuTUI ATCGAT 2 cut(s) 345, 726
BtgI CCRYGG 1 cut(s) 510
BtgZI GCGATG 1 cut(s) 1331
BtrI CACGTC 2 cut(s) 224, 1022
BtsCI GGATG 2 cut(s) 826, 1281
BtsIMutI CAGTG 3 cut(s) 171, 625, 829
Cac8I GCNNGC 2 cut(s) 295, 1287
Cfr10I RCCGGY 3 cut(s) 100, 757, 976
Cfr13I GGNCC 3 cut(s) 659, 887, 1391
ClaI ATCGAT 2 cut(s) 345, 726
Csp6I GTAC 5 cut(s) 703, 903, 957, 1226, 1361
CspAI ACCGGT 2 cut(s) 100, 757
CviAII CATG 1 cut(s) 511
CviQI GTAC 5 cut(s) 703, 903, 957, 1226, 1361
DdeI CTNAG 1 cut(s) 289
DpnI GATC 8 cut(s) 261, 348, 826, 870, 913, 947, 1059, 1200
DpnII GATC 8 cut(s) 259, 346, 824, 868, 911, 945, 1057, 1198
DraI TTTAAA 2 cut(s) 18, 1009
Eam1104I CTCTTC 4 cut(s) 323, 585, 630, 1342
EarI CTCTTC 4 cut(s) 323, 585, 630, 1342
EciI GGCGGA 1 cut(s) 995
Eco130I CCWWGG 1 cut(s) 510
Eco31I GGTCTC 1 cut(s) 381
Eco32I GATATC 1 cut(s) 812
Eco47I GGWCC 2 cut(s) 659, 887
Eco88I CYCGRG 1 cut(s) 1406
EcoRV GATATC 1 cut(s) 812
EcoT14I CCWWGG 1 cut(s) 510
ErhI CCWWGG 1 cut(s) 510
Esp3I CGTCTC 2 cut(s) 230, 1012
FaeI CATG 1 cut(s) 514
FatI CATG 1 cut(s) 510
FauI CCCGC 1 cut(s) 293
FblI GTMKAC 2 cut(s) 437, 718
Fnu4HI GCNGC 1 cut(s) 966
FokI GGATG 2 cut(s) 833, 1288
Fsp4HI GCNGC 1 cut(s) 966
FspBI CTAG 2 cut(s) 294, 1364
GluI GCNGC 1 cut(s) 966
HaeIII GGCC 1 cut(s) 1392
HapII CCGG 9 cut(s) 101, 137, 471, 711, 758, 805, 909, 977, 1389
Hin1I GRCGYC 1 cut(s) 1070
Hin1II CATG 1 cut(s) 514
HincII GTYRAC 4 cut(s) 88, 372, 438, 763
HindII GTYRAC 4 cut(s) 88, 372, 438, 763
HpaII CCGG 9 cut(s) 101, 137, 471, 711, 758, 805, 909, 977, 1389
HphI GGTGA 6 cut(s) 232, 439, 516, 966, 1027, 1377
Hpy166II GTNNAC 9 cut(s) 88, 214, 372, 438, 719, 763, 770, 957, 1132
Hpy188I TCNGA 8 cut(s) 675, 782, 793, 950, 1179, 1203, 1414, 1443
Hpy188III TCNNGA 2 cut(s) 275, 857
Hpy8I GTNNAC 9 cut(s) 88, 214, 372, 438, 719, 763, 770, 957, 1132
Hpy99I CGWCG 6 cut(s) 439, 442, 488, 797, 1003, 1072
HpyAV CCTTC 2 cut(s) 360, 1226
HpyCH4III ACNGT 7 cut(s) 185, 392, 603, 620, 767, 943, 1270
HpyCH4IV ACGT 6 cut(s) 223, 434, 440, 1021, 1070, 1228
HpyCH4V TGCA 1 cut(s) 1113
HpyF10VI GCNNNNNNNGC 3 cut(s) 294, 629, 1295
HpyF3I CTNAG 1 cut(s) 289
HpySE526I ACGT 6 cut(s) 223, 434, 440, 1021, 1070, 1228
Hsp92I GRCGYC 1 cut(s) 1070
Hsp92II CATG 1 cut(s) 514
Kzo9I GATC 8 cut(s) 259, 346, 824, 868, 911, 945, 1057, 1198
LguI GCTCTTC 1 cut(s) 630
LmnI GCTCC 2 cut(s) 109, 653
LweI GCATC 1 cut(s) 534
MaeI CTAG 2 cut(s) 294, 1364
MaeII ACGT 6 cut(s) 223, 434, 440, 1021, 1070, 1228
MaeIII GTNAC 5 cut(s) 185, 219, 238, 404, 1022
MalI GATC 8 cut(s) 261, 348, 826, 870, 913, 947, 1059, 1200
MbiI CCGCTC 1 cut(s) 288
MboI GATC 8 cut(s) 259, 346, 824, 868, 911, 945, 1057, 1198
MflI RGATCY 3 cut(s) 259, 824, 1198
MhlI GDGCHC 1 cut(s) 625
MlyI GAGTC 8 cut(s) 93, 134, 146, 170, 404, 602, 1261, 1447
MmeI TCCRAC 3 cut(s) 816, 1392, 1421
MnlI CCTC 5 cut(s) 174, 179, 410, 491, 1084
MroXI GAANNNNTTC 2 cut(s) 317, 852
MspCI CTTAAG 1 cut(s) 205
MspI CCGG 9 cut(s) 101, 137, 471, 711, 758, 805, 909, 977, 1389
MspR9I CCNGG 4 cut(s) 471, 806, 909, 1389
MssI GTTTAAAC 1 cut(s) 18
MvnI CGCG 2 cut(s) 92, 965
MwoI GCNNNNNNNGC 3 cut(s) 294, 629, 1295
NciI CCSGG 4 cut(s) 471, 806, 909, 1389
NcoI CCATGG 1 cut(s) 510
NdeII GATC 8 cut(s) 259, 346, 824, 868, 911, 945, 1057, 1198
NheI GCTAGC 1 cut(s) 293
NlaIII CATG 1 cut(s) 514
NlaIV GGNNCC 2 cut(s) 261, 1200
NmuCI GTSAC 3 cut(s) 219, 238, 1022
PciSI GCTCTTC 1 cut(s) 630
PcsI WCGNNNNNNNCGW 3 cut(s) 308, 342, 920
PdmI GAANNNNTTC 2 cut(s) 317, 852
PfeI GAWTC 3 cut(s) 788, 799, 1174
PfoI TCCNGGA 2 cut(s) 469, 907
PinAI ACCGGT 2 cut(s) 100, 757
PkrI GCNGC 1 cut(s) 967
PleI GAGTC 8 cut(s) 92, 134, 146, 170, 404, 601, 1260, 1446
PmeI GTTTAAAC 1 cut(s) 18
PpsI GAGTC 8 cut(s) 92, 134, 146, 170, 404, 601, 1260, 1446
Ppu21I YACGTR 1 cut(s) 1229
PspN4I GGNNCC 2 cut(s) 261, 1200
PspPI GGNCC 3 cut(s) 659, 887, 1391
PsuI RGATCY 3 cut(s) 259, 824, 1198
RsaI GTAC 5 cut(s) 704, 904, 958, 1227, 1362
RsaNI GTAC 5 cut(s) 703, 903, 957, 1226, 1361
SalI GTCGAC 1 cut(s) 436
SapI GCTCTTC 1 cut(s) 630
SatI GCNGC 1 cut(s) 966
Sau3AI GATC 8 cut(s) 259, 346, 824, 868, 911, 945, 1057, 1198
Sau96I GGNCC 3 cut(s) 659, 887, 1391
SchI GAGTC 8 cut(s) 93, 134, 146, 170, 404, 602, 1261, 1447
ScrFI CCNGG 4 cut(s) 471, 806, 909, 1389
SduI GDGCHC 1 cut(s) 625
SfaNI GCATC 1 cut(s) 534
SgrAI CRCCGGYG 1 cut(s) 976
SgrDI CGTCGACG 1 cut(s) 436
SinI GGWCC 2 cut(s) 659, 887
SmlI CTYRAG 1 cut(s) 205
SmoI CTYRAG 1 cut(s) 205
SsiI CCGC 7 cut(s) 92, 286, 547, 965, 980, 1127, 1196
SspMI CTAG 2 cut(s) 294, 1364
StyD4I CCNGG 4 cut(s) 469, 804, 907, 1387
StyI CCWWGG 1 cut(s) 510
TaaI ACNGT 7 cut(s) 185, 392, 603, 620, 767, 943, 1270
TaiI ACGT 6 cut(s) 226, 437, 443, 1024, 1073, 1231
TaqI TCGA 9 cut(s) 96, 150, 276, 345, 437, 486, 542, 726, 1255
TatI WGTACW 2 cut(s) 902, 956
TauI GCSGC 1 cut(s) 968
TfiI GAWTC 3 cut(s) 788, 799, 1174
TscAI CASTG 3 cut(s) 178, 625, 836
TseFI GTSAC 3 cut(s) 219, 238, 1022
Tsp45I GTSAC 3 cut(s) 219, 238, 1022
TspDTI ATGAA 3 cut(s) 183, 553, 960
TspGWI ACGGA 8 cut(s) 272, 392, 399, 666, 870, 879, 1016, 1417
TspRI CASTG 3 cut(s) 178, 625, 836
Vha464I CTTAAG 1 cut(s) 205
VpaK11BI GGWCC 2 cut(s) 659, 887
XapI RAATTY 2 cut(s) 250, 496
XmiI GTMKAC 2 cut(s) 437, 718
XmnI GAANNNNTTC 2 cut(s) 317, 852
XspI CTAG 2 cut(s) 294, 1364
ZraI GACGTC 1 cut(s) 1071
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.