Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004634

Physical Location & Seq

Genomic Coordinates Forward (+)

9910039 .. 9912285

Gene Structure 2247 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0122800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGATTGCCCTCAAACACATTCAAATCTCTTTCAACGGCACCAGACATACCATTTTACAGTCGGGAAGATTTCCCAGCACAAAGAACTCCATCTTGCGCTTCAGCAAGTCCAATGATTCCGATTCCGAATCAGAGACTCCTTCGCCTGAGGGAGATACTCGCAAGCAAGAGCTGCTGGTGAGGATAGCAATGCTTCAAGCTCAGAAAGTCCGGCTTGCGGATTACTTAGATGAAAGATCAGAATATCTTACTAAATTCGGAGAAGATGCCACTGCAGAGTTTGACAAGATTGGAGAAGATGCCCTCAAAGGACTGGATGAAGCCAGCGCTCGGATAATGGAGAATATGGACAGCCGCATGCAGGCGTTTGAGGAATCTACAGGAGTGAACATATCGGAGATCGAAGAAAATGAAAATGAGTTAGCAGCATTCGAAGATCAGATTGAAAAAGACCGAAATGAAGGGCTATTTTTCAAGAATCTGACGCCGGGGAAACCCATAAAAAAGTTAGACGCTACAGAGGAAATAAAGAAGATCAAGGAGCTTACTAAAGAAAGTGCAGGATCAGAAACCAGGAGGAATATTTACCTTGTATTGATTGGCCTGCTACTCATAGAAATTGTTGACTCTTTCATCACTTCAACGCCCGATTGGAGAAAAGTTGCATTTCTCGGGGTAATTTTAGTGGGTTTGGTTACTCAGTTCATCTATGAGCAGAAAATGCTATCAGAAAAAGAAATAGCAGAAGAGAAGAAGACAGAGGAAGAAAGAAGACCCAAAATTAAGAAAGACCTGCTGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF868

Protein Analysis

267

Amino Acids

30.47

Weight (kDa)

5.01

Isoelectric Point (pI)

55.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44735 AT3G44735
fragaria_vesca	FvH4_3g29900 FvH4_3g29900 FvH4_3g29900 FvH4_6g17920
malus_domestica	MD03G1134700.v1.1 MD11G1157500.v1.1 MD12G1018200.v1.1 MD14G1016200.v1.1
prunus_persica	Prupe.7G116900_v2.0.a1
pyrus_communis	pycom03g09070 pycom14g01400
rosa_chinensis	RchiOBHm_Chr3g0472171 RchiOBHm_Chr5g0055241
rosa_multiflora	Rmu_sc0002532.1_g000031 Rmu_sc0003110.1_g000017 Rmu_sc0011582.1_g000019
rosa_roxburghii	Rroxscaffold_1G00025060 Rroxscaffold_6G00409170
rosa_rugosa	Rorug03G0122800 Rorug05G0292000
rosa_samantha	Rh3AG174800 Rh3CG191300 Rh3CG198700 Rh3DG174600 Rh5AG361800 Rh5BG373400 Rh5CG395100 Rh5DG386600
rosa_wichuraiana	Rw5G034020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AciI	CCGC	2 cut(s)	218, 355
AclWI	GGATC	1 cut(s)	571
AcsI	RAATTY	1 cut(s)	254
AcuI	CTGAAG	1 cut(s)	85
AcyI	GRCGYC	1 cut(s)	485
AfeI	AGCGCT	1 cut(s)	328
AfiI	CCNNNNNNNGG	3 cut(s)	217, 330, 361
AgsI	TTSAA	6 cut(s)	23, 34, 197, 446, 475, 642
AjnI	CCWGG	1 cut(s)	572
AluBI	AGCT	3 cut(s)	172, 200, 544
AluI	AGCT	3 cut(s)	172, 200, 544
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	1 cut(s)	571
Ama87I	CYCGRG	1 cut(s)	671
Aor51HI	AGCGCT	1 cut(s)	328
AoxI	GGCC	1 cut(s)	601
ApeKI	GCWGC	3 cut(s)	172, 425, 796
ApoI	RAATTY	1 cut(s)	254
AspLEI	GCGC	2 cut(s)	99, 329
AsuC2I	CCSGG	1 cut(s)	489
AsuHPI	GGTGA	1 cut(s)	190
AsuII	TTCGAA	1 cut(s)	432
AvaI	CYCGRG	1 cut(s)	671
AxyI	CCTNAGG	1 cut(s)	147
BanI	GGYRCC	1 cut(s)	38
BbsI	GAAGAC	2 cut(s)	761, 778
BbvI	GCAGC	3 cut(s)	159, 437, 783
BccI	CCATC	1 cut(s)	98
BceAI	ACGGC	1 cut(s)	52
BciT130I	CCWGG	1 cut(s)	574
BcnI	CCSGG	1 cut(s)	489
BcoDI	GTCTC	1 cut(s)	128
BfmI	CTRYAG	4 cut(s)	273, 378, 516, 800
BfoI	RGCGCY	1 cut(s)	330
BisI	GCNGC	4 cut(s)	173, 355, 426, 797
BlsI	GCNGC	4 cut(s)	174, 356, 427, 798
Bme1390I	CCNGG	2 cut(s)	489, 574
BmeT110I	CYCGRG	1 cut(s)	671
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	2 cut(s)	489, 574
BmsI	GCATC	2 cut(s)	256, 289
BpiI	GAAGAC	2 cut(s)	761, 778
Bpu14I	TTCGAA	1 cut(s)	432
BpuMI	CCSGG	1 cut(s)	489
BsaHI	GRCGYC	1 cut(s)	485
BsaJI	CCNNGG	1 cut(s)	488
Bsc4I	CCNNNNNNNGG	3 cut(s)	217, 330, 361
Bse1I	ACTGG	1 cut(s)	318
Bse21I	CCTNAGG	1 cut(s)	147
Bse3DI	GCAATG	1 cut(s)	195
BseBI	CCWGG	1 cut(s)	574
BseDI	CCNNGG	1 cut(s)	488
BseGI	GGATG	1 cut(s)	322
BseLI	CCNNNNNNNGG	3 cut(s)	217, 330, 361
BseMI	GCAATG	1 cut(s)	195
BseMII	CTCAG	3 cut(s)	138, 215, 713
BseNI	ACTGG	1 cut(s)	318
BseXI	GCAGC	3 cut(s)	159, 437, 783
BseYI	CCCAGC	1 cut(s)	74
BsgI	GTGCAG	1 cut(s)	579
BshFI	GGCC	1 cut(s)	603
BshNI	GGYRCC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	671
BsiSI	CCGG	2 cut(s)	211, 488
BslI	CCNNNNNNNGG	3 cut(s)	217, 330, 361
BsmAI	GTCTC	1 cut(s)	128
BsmI	GAATGC	1 cut(s)	428
BsnI	GGCC	1 cut(s)	603
BsoBI	CYCGRG	1 cut(s)	671
Bsp119I	TTCGAA	1 cut(s)	432
Bsp143I	GATC	5 cut(s)	236, 399, 436, 534, 563
BspACI	CCGC	2 cut(s)	218, 355
BspANI	GGCC	1 cut(s)	603
BspCNI	CTCAG	3 cut(s)	139, 214, 712
BspLI	GGNNCC	1 cut(s)	40
BspMAI	CTGCAG	1 cut(s)	277
BspPI	GGATC	1 cut(s)	571
BspT104I	TTCGAA	1 cut(s)	432
BspT107I	GGYRCC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	318
BssECI	CCNNGG	1 cut(s)	488
BssMI	GATC	5 cut(s)	236, 399, 436, 534, 563
BssNI	GRCGYC	1 cut(s)	485
Bst2UI	CCWGG	1 cut(s)	574
Bst4CI	ACNGT	1 cut(s)	60
Bst6I	CTCTTC	1 cut(s)	741
BstACI	GRCGYC	1 cut(s)	485
BstAPI	GCANNNNNTGC	2 cut(s)	172, 721
BstBI	TTCGAA	1 cut(s)	432
BstC8I	GCNNGC	6 cut(s)	164, 216, 325, 359, 363, 605
BstDEI	CTNAG	4 cut(s)	147, 201, 226, 699
BstF5I	GGATG	1 cut(s)	322
BstH2I	RGCGCY	1 cut(s)	330
BstHHI	GCGC	2 cut(s)	99, 329
BstKTI	GATC	5 cut(s)	239, 402, 439, 537, 566
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	5 cut(s)	236, 399, 436, 534, 563
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 721
BstNI	CCWGG	1 cut(s)	574
BstNSI	RCATGY	1 cut(s)	361
BstSCI	CCNGG	2 cut(s)	487, 572
BstSFI	CTRYAG	4 cut(s)	273, 378, 516, 800
BstV1I	GCAGC	3 cut(s)	159, 437, 783
BstV2I	GAAGAC	2 cut(s)	761, 778
Bsu36I	CCTNAGG	1 cut(s)	147
BsuRI	GGCC	1 cut(s)	603
BtsCI	GGATG	1 cut(s)	322
BtsI	GCAGTG	1 cut(s)	270
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	6 cut(s)	164, 216, 325, 359, 363, 605
CfoI	GCGC	2 cut(s)	99, 329
CseI	GACGC	2 cut(s)	493, 521
CviAII	CATG	1 cut(s)	358
CviJI	RGCY	8 cut(s)	172, 200, 214, 323, 354, 466, 544, 603
CviKI_1	RGCY	8 cut(s)	172, 200, 214, 323, 354, 466, 544, 603
DdeI	CTNAG	4 cut(s)	147, 201, 226, 699
DpnI	GATC	5 cut(s)	238, 401, 438, 536, 565
DpnII	GATC	5 cut(s)	236, 399, 436, 534, 563
Eam1104I	CTCTTC	1 cut(s)	741
EarI	CTCTTC	1 cut(s)	741
Eco47III	AGCGCT	1 cut(s)	328
Eco57I	CTGAAG	1 cut(s)	85
Eco81I	CCTNAGG	1 cut(s)	147
Eco88I	CYCGRG	1 cut(s)	671
EcoRII	CCWGG	1 cut(s)	572
FaeI	CATG	1 cut(s)	361
FaiI	YATR	8 cut(s)	48, 347, 359, 392, 500, 614, 711, 802
FalI	AAGNNNNNCTT	2 cut(s)	198, 230
FatI	CATG	1 cut(s)	357
Fnu4HI	GCNGC	4 cut(s)	173, 355, 426, 797
FokI	GGATG	1 cut(s)	329
Fsp4HI	GCNGC	4 cut(s)	173, 355, 426, 797
GlaI	GCGC	2 cut(s)	98, 328
GluI	GCNGC	4 cut(s)	173, 355, 426, 797
GsaI	CCCAGC	1 cut(s)	78
HaeII	RGCGCY	1 cut(s)	330
HaeIII	GGCC	1 cut(s)	603
HapII	CCGG	2 cut(s)	211, 488
HgaI	GACGC	2 cut(s)	493, 521
HhaI	GCGC	2 cut(s)	99, 329
Hin1I	GRCGYC	1 cut(s)	485
Hin1II	CATG	1 cut(s)	361
Hin6I	GCGC	2 cut(s)	97, 327
HinP1I	GCGC	2 cut(s)	97, 327
HincII	GTYRAC	1 cut(s)	625
HindII	GTYRAC	1 cut(s)	625
HinfI	GANTC	7 cut(s)	116, 122, 128, 136, 374, 478, 626
HpaII	CCGG	2 cut(s)	211, 488
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	2 cut(s)	388, 625
Hpy188III	TCNNGA	2 cut(s)	63, 475
Hpy8I	GTNNAC	2 cut(s)	388, 625
HpyAV	CCTTC	2 cut(s)	150, 455
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4V	TGCA	4 cut(s)	275, 361, 560, 665
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 721
HpyF3I	CTNAG	4 cut(s)	147, 201, 226, 699
Hsp92I	GRCGYC	1 cut(s)	485
Hsp92II	CATG	1 cut(s)	361
HspAI	GCGC	2 cut(s)	97, 327
Kzo9I	GATC	5 cut(s)	236, 399, 436, 534, 563
LmnI	GCTCC	1 cut(s)	541
Lsp1109I	GCAGC	3 cut(s)	159, 437, 783
LweI	GCATC	2 cut(s)	256, 289
MaeIII	GTNAC	1 cut(s)	694
MalI	GATC	5 cut(s)	238, 401, 438, 536, 565
MboI	GATC	5 cut(s)	236, 399, 436, 534, 563
MluCI	AATT	4 cut(s)	254, 618, 678, 780
MlyI	GAGTC	2 cut(s)	130, 620
MnlI	CCTC	8 cut(s)	20, 142, 174, 314, 364, 514, 570, 754
MseI	TTAA	1 cut(s)	783
MspI	CCGG	2 cut(s)	211, 488
MspR9I	CCNGG	2 cut(s)	489, 574
Mva1269I	GAATGC	1 cut(s)	428
MvaI	CCWGG	1 cut(s)	574
MwoI	GCNNNNNNNGC	2 cut(s)	172, 721
NciI	CCSGG	1 cut(s)	489
NdeII	GATC	5 cut(s)	236, 399, 436, 534, 563
NlaIII	CATG	1 cut(s)	361
NlaIV	GGNNCC	1 cut(s)	40
NspI	RCATGY	1 cut(s)	361
NspV	TTCGAA	1 cut(s)	432
PaeI	GCATGC	1 cut(s)	361
PctI	GAATGC	1 cut(s)	428
PfeI	GAWTC	5 cut(s)	116, 122, 128, 374, 478
PkrI	GCNGC	4 cut(s)	174, 356, 427, 798
PleI	GAGTC	2 cut(s)	130, 620
PpsI	GAGTC	2 cut(s)	130, 620
Psp6I	CCWGG	1 cut(s)	572
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	572
PspN4I	GGNNCC	1 cut(s)	40
PstI	CTGCAG	1 cut(s)	277
SaqAI	TTAA	1 cut(s)	783
SatI	GCNGC	4 cut(s)	173, 355, 426, 797
Sau3AI	GATC	5 cut(s)	236, 399, 436, 534, 563
SchI	GAGTC	2 cut(s)	130, 620
ScrFI	CCNGG	2 cut(s)	489, 574
SetI	ASST	5 cut(s)	174, 202, 546, 591, 795
SfaNI	GCATC	2 cut(s)	256, 289
SfcI	CTRYAG	4 cut(s)	273, 378, 516, 800
SfuI	TTCGAA	1 cut(s)	432
SphI	GCATGC	1 cut(s)	361
Sse9I	AATT	4 cut(s)	254, 618, 678, 780
SsiI	CCGC	2 cut(s)	218, 355
SspI	AATATT	1 cut(s)	583
StyD4I	CCNGG	2 cut(s)	487, 572
TaaI	ACNGT	1 cut(s)	60
TaqI	TCGA	2 cut(s)	402, 432
TaqII	GACCGA	1 cut(s)	468
TasI	AATT	4 cut(s)	254, 618, 678, 780
TauI	GCSGC	1 cut(s)	357
TfiI	GAWTC	5 cut(s)	116, 122, 128, 374, 478
Tru1I	TTAA	1 cut(s)	783
Tru9I	TTAA	1 cut(s)	783
TscAI	CASTG	1 cut(s)	277
TseI	GCWGC	3 cut(s)	172, 425, 796
TspDTI	ATGAA	6 cut(s)	246, 333, 426, 474, 622, 694
TspRI	CASTG	1 cut(s)	277
XapI	RAATTY	1 cut(s)	254
XceI	RCATGY	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.