FvH4_6g17920

Phytosulfokines

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004634
Physical Location & Seq
Reverse (-)
11755290 .. 11756049
760 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g17920.t1

Sequence Viewer

Length: 240 bp
ATGAAGAAGCAGAATCTCCTCCTCGTCATCTTTTCTCTCTTTCTTTTCCTCATCATCTCATCACATGCTCGTCGTCTTCCACAAGACCAAGCCTCAGCAACCGCCGCTGCAGATCATGATGACATCATGGACCTGATGGGATCGGAAGAATGCCATGAGAAAGATGAAGAGTGTCTCCAGCGAAGGATGGTTGCAGAAGCTCACCTGGATTATATCTACACCCAGCACCAGAAGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PSK

Protein Analysis

80

Amino Acids

9.16

Weight (kDa)

5.36

Isoelectric Point (pI)

64.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSK PF06404 20 - 79 1.1e-17 Phytosulfokine precursor protein (PSK)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 102, 105
AclWI GGATC 1 cut(s) 148
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
Alw26I GTCTC 1 cut(s) 179
AlwI GGATC 1 cut(s) 148
ApeKI GCWGC 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 130
AsuHPI GGTGA 1 cut(s) 194
AvaII GGWCC 1 cut(s) 130
BbsI GAAGAC 1 cut(s) 68
BbvCI CCTCAGC 1 cut(s) 94
BbvI GCAGC 1 cut(s) 94
BccI CCATC 2 cut(s) 130, 181
BciT130I CCWGG 1 cut(s) 206
BcoDI GTCTC 1 cut(s) 179
BfmI CTRYAG 1 cut(s) 108
BisI GCNGC 2 cut(s) 105, 108
BlsI GCNGC 2 cut(s) 106, 109
Bme1390I CCNGG 1 cut(s) 206
Bme18I GGWCC 1 cut(s) 130
BmgT120I GGNCC 1 cut(s) 130
BmrFI CCNGG 1 cut(s) 206
BpiI GAAGAC 1 cut(s) 68
BpmI CTGGAG 1 cut(s) 161
Bpu10I CCTNAGC 1 cut(s) 94
BseBI CCWGG 1 cut(s) 206
BseGI GGATG 1 cut(s) 192
BseMII CTCAG 1 cut(s) 108
BseRI GAGGAG 2 cut(s) 8, 11
BseXI GCAGC 1 cut(s) 94
BseYI CCCAGC 1 cut(s) 222
BsmAI GTCTC 1 cut(s) 179
BsmI GAATGC 1 cut(s) 155
Bsp143I GATC 2 cut(s) 112, 140
BspACI CCGC 2 cut(s) 102, 105
BspCNI CTCAG 1 cut(s) 107
BspHI TCATGA 1 cut(s) 115
BspMAI CTGCAG 1 cut(s) 112
BspPI GGATC 1 cut(s) 148
BssMI GATC 2 cut(s) 112, 140
Bst2UI CCWGG 1 cut(s) 206
Bst6I CTCTTC 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 94
BstF5I GGATG 1 cut(s) 192
BstKTI GATC 2 cut(s) 115, 143
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 2 cut(s) 112, 140
BstMWI GCNNNNNNNGC 2 cut(s) 104, 232
BstNI CCWGG 1 cut(s) 206
BstNSI RCATGY 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 204
BstSFI CTRYAG 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 94
BstV2I GAAGAC 1 cut(s) 68
BtsCI GGATG 1 cut(s) 192
CciI TCATGA 1 cut(s) 115
Cfr13I GGNCC 1 cut(s) 130
CviAII CATG 4 cut(s) 65, 116, 127, 155
CviJI RGCY 3 cut(s) 92, 200, 235
CviKI_1 RGCY 3 cut(s) 92, 200, 235
DdeI CTNAG 1 cut(s) 94
DpnI GATC 2 cut(s) 114, 142
DpnII GATC 2 cut(s) 112, 140
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 204
FaeI CATG 4 cut(s) 68, 119, 130, 158
FaiI YATR 6 cut(s) 66, 117, 128, 156, 213, 238
FatI CATG 4 cut(s) 64, 115, 126, 154
Fnu4HI GCNGC 2 cut(s) 105, 108
FokI GGATG 1 cut(s) 199
Fsp4HI GCNGC 2 cut(s) 105, 108
GluI GCNGC 2 cut(s) 105, 108
GsaI CCCAGC 1 cut(s) 226
GsuI CTGGAG 1 cut(s) 161
Hin1II CATG 4 cut(s) 68, 119, 130, 158
HinfI GANTC 1 cut(s) 13
HphI GGTGA 1 cut(s) 194
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 1 cut(s) 116
Hpy99I CGWCG 1 cut(s) 75
HpyAV CCTTC 1 cut(s) 177
HpyCH4V TGCA 2 cut(s) 110, 194
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 232
HpyF3I CTNAG 1 cut(s) 94
Hsp92II CATG 4 cut(s) 68, 119, 130, 158
Kzo9I GATC 2 cut(s) 112, 140
LpnPI CCDG 5 cut(s) 146, 191, 191, 218, 236
Lsp1109I GCAGC 1 cut(s) 94
MalI GATC 2 cut(s) 114, 142
MboI GATC 2 cut(s) 112, 140
MboII GAAGA 4 cut(s) 16, 68, 158, 179
MnlI CCTC 4 cut(s) 29, 32, 59, 103
MspA1I CMGCKG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 206
Mva1269I GAATGC 1 cut(s) 155
MvaI CCWGG 1 cut(s) 206
MwoI GCNNNNNNNGC 2 cut(s) 104, 232
NdeII GATC 2 cut(s) 112, 140
NlaIII CATG 4 cut(s) 68, 119, 130, 158
NspI RCATGY 1 cut(s) 68
PagI TCATGA 1 cut(s) 115
PctI GAATGC 1 cut(s) 155
PfeI GAWTC 1 cut(s) 13
PkrI GCNGC 2 cut(s) 106, 109
Psp6I CCWGG 1 cut(s) 204
PspFI CCCAGC 1 cut(s) 222
PspGI CCWGG 1 cut(s) 204
PspPI GGNCC 1 cut(s) 130
PstI CTGCAG 1 cut(s) 112
SatI GCNGC 2 cut(s) 105, 108
Sau3AI GATC 2 cut(s) 112, 140
Sau96I GGNCC 1 cut(s) 130
ScrFI CCNGG 1 cut(s) 206
SetI ASST 3 cut(s) 135, 202, 207
SfcI CTRYAG 1 cut(s) 108
SinI GGWCC 1 cut(s) 130
SsiI CCGC 2 cut(s) 102, 105
StyD4I CCNGG 1 cut(s) 204
TauI GCSGC 1 cut(s) 107
TfiI GAWTC 1 cut(s) 13
TseI GCWGC 1 cut(s) 107
TspDTI ATGAA 2 cut(s) 17, 180
VpaK11BI GGWCC 1 cut(s) 130
XceI RCATGY 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.