AT3G44735

Phytosulfokines

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004634
Physical Location & Seq
Reverse (-)
16291147 .. 16292464
1318 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G44735.1

Sequence Viewer

Length: 246 bp
ATGAAGCAAAGCTTGTGCCTGGCAGTTCTCTTCCTCATTTTATCAACAAGTTCATCTGCAATTCGAAGAGGAAAAGAAGATCAAGAGATAAATCCATTAGTTTCAGCTACATCAGTGGAAGAGGACTCAGTTAATAAATTGATGGGGATGGAATATTGTGGAGAAGGAGATGAAGAATGTTTGAGGAGAAGGATGATGACGGAATCTCACTTAGACTATATTTACACACAGCACCATAAGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PSK

Protein Analysis

81

Amino Acids

9.29

Weight (kDa)

5.46

Isoelectric Point (pI)

82.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSK PF06404 10 - 81 8.9e-19 Phytosulfokine precursor protein (PSK)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 2 cut(s) 12, 107
AluI AGCT 2 cut(s) 12, 107
AsuII TTCGAA 1 cut(s) 64
BccI CCATC 2 cut(s) 136, 142
BciT130I CCWGG 1 cut(s) 20
Bme1390I CCNGG 1 cut(s) 20
BmrFI CCNGG 1 cut(s) 20
Bpu14I TTCGAA 1 cut(s) 64
BseBI CCWGG 1 cut(s) 20
BseGI GGATG 2 cut(s) 153, 198
BseMII CTCAG 1 cut(s) 141
BseRI GAGGAG 1 cut(s) 199
Bsp119I TTCGAA 1 cut(s) 64
Bsp143I GATC 1 cut(s) 79
BspCNI CTCAG 1 cut(s) 140
BspT104I TTCGAA 1 cut(s) 64
BssMI GATC 1 cut(s) 79
Bst2UI CCWGG 1 cut(s) 20
Bst6I CTCTTC 3 cut(s) 35, 61, 114
BstBI TTCGAA 1 cut(s) 64
BstDEI CTNAG 2 cut(s) 127, 211
BstF5I GGATG 2 cut(s) 153, 198
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstMWI GCNNNNNNNGC 1 cut(s) 238
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 18
BtsCI GGATG 2 cut(s) 153, 198
BtsIMutI CAGTG 1 cut(s) 120
CviJI RGCY 2 cut(s) 12, 107
CviKI_1 RGCY 2 cut(s) 12, 107
DdeI CTNAG 2 cut(s) 127, 211
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
Eam1104I CTCTTC 3 cut(s) 35, 61, 114
EarI CTCTTC 3 cut(s) 35, 61, 114
EcoRII CCWGG 1 cut(s) 18
FaiI YATR 2 cut(s) 219, 237
FalI AAGNNNNNCTT 1 cut(s) 28
FokI GGATG 2 cut(s) 160, 205
HindIII AAGCTT 1 cut(s) 10
HinfI GANTC 2 cut(s) 125, 203
Hpy188III TCNNGA 1 cut(s) 83
HpyAV CCTTC 2 cut(s) 158, 183
HpyCH4V TGCA 1 cut(s) 59
HpyF10VI GCNNNNNNNGC 1 cut(s) 238
HpyF3I CTNAG 2 cut(s) 127, 211
Kzo9I GATC 1 cut(s) 79
LpnPI CCDG 2 cut(s) 5, 32
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MboII GAAGA 5 cut(s) 22, 78, 89, 131, 185
MluCI AATT 2 cut(s) 60, 137
MlyI GAGTC 1 cut(s) 119
MnlI CCTC 4 cut(s) 44, 62, 115, 177
MseI TTAA 1 cut(s) 132
MspR9I CCNGG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 238
NdeII GATC 1 cut(s) 79
NspV TTCGAA 1 cut(s) 64
PfeI GAWTC 1 cut(s) 203
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
SaqAI TTAA 1 cut(s) 132
Sau3AI GATC 1 cut(s) 79
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 20
SetI ASST 2 cut(s) 14, 109
SfuI TTCGAA 1 cut(s) 64
SgeI CNNG 5 cut(s) 25, 31, 32, 60, 95
Sse9I AATT 2 cut(s) 60, 137
SspI AATATT 1 cut(s) 155
StyD4I CCNGG 1 cut(s) 18
TaqI TCGA 1 cut(s) 64
TasI AATT 2 cut(s) 60, 137
TfiI GAWTC 1 cut(s) 203
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 1 cut(s) 120
TspDTI ATGAA 3 cut(s) 17, 42, 186
TspGWI ACGGA 1 cut(s) 215
TspRI CASTG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.