FvH4_3g29900

phytosulfokines 6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004634
Physical Location & Seq
Forward (+)
23001508 .. 23004215
2708 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29900.t2

Sequence Viewer

Length: 285 bp
ATGAGGCCAAGCTTTCAAACAACAGCTATTGTTCTGTGCATCTTGTTCATCATTTCTTCCTCAACAATATCAGCCAGCAGGCTTTTACAGGACAAAGAAGGACAAGAGGAGGCAAAGCTCAAGAAAATCAGTGATGGGGATTCACTTGTGGAGCTGGAAAGCAGTGACCTCATGAATCTAATGGGACTGGAAGCCTGTGTTGATGGAGATGAAGAATGTTTAAAGAGAAGAGTTACTGCAGAAGCTCACTTGGACTACATCTACACCCAGCACCATAAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PSK

Protein Analysis

95

Amino Acids

10.51

Weight (kDa)

4.9

Isoelectric Point (pI)

53.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSK PF06404 15 - 94 9.3e-23 Phytosulfokine precursor protein (PSK)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 17
AluBI AGCT 5 cut(s) 12, 26, 118, 154, 245
AluI AGCT 5 cut(s) 12, 26, 118, 154, 245
AoxI GGCC 1 cut(s) 5
BccI CCATC 2 cut(s) 128, 197
BfmI CTRYAG 1 cut(s) 237
BmsI GCATC 1 cut(s) 48
BpuEI CTTGAG 1 cut(s) 104
Bse1I ACTGG 1 cut(s) 192
BseNI ACTGG 1 cut(s) 192
BseRI GAGGAG 1 cut(s) 122
BseYI CCCAGC 1 cut(s) 267
BshFI GGCC 1 cut(s) 7
BslFI GGGAC 1 cut(s) 198
BsmFI GGGAC 1 cut(s) 198
BsnI GGCC 1 cut(s) 7
BspANI GGCC 1 cut(s) 7
BspHI TCATGA 1 cut(s) 171
BspMAI CTGCAG 1 cut(s) 241
BsrI ACTGG 1 cut(s) 192
Bst6I CTCTTC 1 cut(s) 223
BstC8I GCNNGC 2 cut(s) 76, 80
BstMWI GCNNNNNNNGC 1 cut(s) 277
BstSFI CTRYAG 1 cut(s) 237
BsuRI GGCC 1 cut(s) 7
BtsI GCAGTG 1 cut(s) 169
BtsIMutI CAGTG 2 cut(s) 136, 169
Cac8I GCNNGC 2 cut(s) 76, 80
CciI TCATGA 1 cut(s) 171
CviAII CATG 1 cut(s) 172
DraI TTTAAA 1 cut(s) 222
Eam1104I CTCTTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 223
FaeI CATG 1 cut(s) 175
FaiI YATR 2 cut(s) 173, 276
FaqI GGGAC 1 cut(s) 198
FatI CATG 1 cut(s) 171
GsaI CCCAGC 1 cut(s) 271
HaeIII GGCC 1 cut(s) 7
Hin1II CATG 1 cut(s) 175
HindIII AAGCTT 1 cut(s) 10
HinfI GANTC 2 cut(s) 140, 175
Hpy188III TCNNGA 2 cut(s) 121, 172
HpyAV CCTTC 1 cut(s) 92
HpyCH4V TGCA 2 cut(s) 39, 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 277
Hsp92II CATG 1 cut(s) 175
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 7 cut(s) 64, 74, 88, 140, 173, 208, 281
LweI GCATC 1 cut(s) 48
MaeIII GTNAC 2 cut(s) 164, 232
MboII GAAGA 3 cut(s) 48, 224, 240
MnlI CCTC 4 cut(s) 70, 100, 103, 179
MseI TTAA 1 cut(s) 221
MwoI GCNNNNNNNGC 1 cut(s) 277
NlaIII CATG 1 cut(s) 175
NmuCI GTSAC 1 cut(s) 164
PagI TCATGA 1 cut(s) 171
PfeI GAWTC 2 cut(s) 140, 175
PspFI CCCAGC 1 cut(s) 267
PstI CTGCAG 1 cut(s) 241
SaqAI TTAA 1 cut(s) 221
SetI ASST 6 cut(s) 14, 28, 120, 156, 171, 247
SfaNI GCATC 1 cut(s) 48
SfcI CTRYAG 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
TfiI GAWTC 2 cut(s) 140, 175
Tru1I TTAA 1 cut(s) 221
Tru9I TTAA 1 cut(s) 221
TscAI CASTG 2 cut(s) 136, 169
TseFI GTSAC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 164
TspDTI ATGAA 3 cut(s) 37, 188, 225
TspRI CASTG 2 cut(s) 136, 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.