Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002532.1

Orthogroup ID

OG0004634

Physical Location & Seq

Genomic Coordinates Reverse (-)

150802 .. 151149

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002532.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

atgaagaagcagagtctcctcctagtcatcttttctctctttcttttcctcgtcatctcatcacatgctcgtcatcttccaaatgaccaaggctcatcaactgccgctgcagatcatggcatcatggacctaatgggatcggaggaatgccatgagaaagatgaagagtgtctacagaggaggatgattgcagaagctcacctagattatatctacacccagcaccagaagccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PSK

Protein Analysis

78

Amino Acids

8.93

Weight (kDa)

5.78

Isoelectric Point (pI)

61.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44735 AT3G44735
fragaria_vesca	FvH4_3g29900 FvH4_3g29900 FvH4_3g29900 FvH4_6g17920
malus_domestica	MD03G1134700.v1.1 MD11G1157500.v1.1 MD12G1018200.v1.1 MD14G1016200.v1.1
prunus_persica	Prupe.7G116900_v2.0.a1
pyrus_communis	pycom03g09070 pycom14g01400
rosa_chinensis	RchiOBHm_Chr3g0472171 RchiOBHm_Chr5g0055241
rosa_multiflora	Rmu_sc0002532.1_g000031 Rmu_sc0003110.1_g000017 Rmu_sc0011582.1_g000019
rosa_roxburghii	Rroxscaffold_1G00025060 Rroxscaffold_6G00409170
rosa_rugosa	Rorug03G0122800 Rorug05G0292000
rosa_samantha	Rh3AG174800 Rh3CG191300 Rh3CG198700 Rh3DG174600 Rh5AG361800 Rh5BG373400 Rh5CG395100 Rh5DG386600
rosa_wichuraiana	Rw5G034020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	172
AciI	CCGC	1 cut(s)	105
AclWI	GGATC	1 cut(s)	145
AluBI	AGCT	1 cut(s)	197
AluI	AGCT	1 cut(s)	197
Alw26I	GTCTC	1 cut(s)	20
AlwI	GGATC	1 cut(s)	145
ApeKI	GCWGC	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	127
BarI	GAAGNNNNNNTAC	2 cut(s)	156, 188
BbvI	GCAGC	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	20
BfaI	CTAG	2 cut(s)	23, 203
BfmI	CTRYAG	2 cut(s)	108, 173
BisI	GCNGC	2 cut(s)	105, 108
BlsI	GCNGC	2 cut(s)	106, 109
Bme18I	GGWCC	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	127
BmsI	GCATC	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	88
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	1 cut(s)	189
BseRI	GAGGAG	2 cut(s)	8, 193
BseXI	GCAGC	1 cut(s)	94
BseYI	CCCAGC	1 cut(s)	219
BsmAI	GTCTC	1 cut(s)	20
BsmI	GAATGC	1 cut(s)	152
Bsp143I	GATC	2 cut(s)	112, 137
BspACI	CCGC	1 cut(s)	105
BspMAI	CTGCAG	1 cut(s)	112
BspPI	GGATC	1 cut(s)	145
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	2 cut(s)	112, 137
BssT1I	CCWWGG	1 cut(s)	88
Bst6I	CTCTTC	1 cut(s)	159
BstF5I	GGATG	1 cut(s)	189
BstKTI	GATC	2 cut(s)	115, 140
BstMAI	GTCTC	1 cut(s)	20
BstMBI	GATC	2 cut(s)	112, 137
BstMWI	GCNNNNNNNGC	1 cut(s)	229
BstNSI	RCATGY	1 cut(s)	68
BstSFI	CTRYAG	2 cut(s)	108, 173
BstV1I	GCAGC	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	127
CviAII	CATG	4 cut(s)	65, 116, 124, 152
CviJI	RGCY	3 cut(s)	93, 197, 232
CviKI_1	RGCY	3 cut(s)	93, 197, 232
DpnI	GATC	2 cut(s)	114, 139
DpnII	GATC	2 cut(s)	112, 137
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	4 cut(s)	68, 119, 127, 155
FaiI	YATR	6 cut(s)	66, 117, 125, 153, 210, 235
FatI	CATG	4 cut(s)	64, 115, 123, 151
FblI	GTMKAC	1 cut(s)	172
Fnu4HI	GCNGC	2 cut(s)	105, 108
FokI	GGATG	1 cut(s)	196
Fsp4HI	GCNGC	2 cut(s)	105, 108
FspBI	CTAG	2 cut(s)	23, 203
GluI	GCNGC	2 cut(s)	105, 108
GsaI	CCCAGC	1 cut(s)	223
Hin1II	CATG	4 cut(s)	68, 119, 127, 155
HinfI	GANTC	1 cut(s)	13
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188I	TCNGA	1 cut(s)	142
Hpy8I	GTNNAC	1 cut(s)	173
HpyCH4V	TGCA	2 cut(s)	110, 191
HpyF10VI	GCNNNNNNNGC	1 cut(s)	229
Hsp92II	CATG	4 cut(s)	68, 119, 127, 155
Kzo9I	GATC	2 cut(s)	112, 137
LpnPI	CCDG	1 cut(s)	233
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	1 cut(s)	129
MaeI	CTAG	2 cut(s)	23, 203
MalI	GATC	2 cut(s)	114, 139
MboI	GATC	2 cut(s)	112, 137
MboII	GAAGA	3 cut(s)	16, 68, 176
MlyI	GAGTC	1 cut(s)	22
MnlI	CCTC	5 cut(s)	29, 59, 136, 171, 174
MspA1I	CMGCKG	1 cut(s)	107
Mva1269I	GAATGC	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	229
NdeII	GATC	2 cut(s)	112, 137
NlaIII	CATG	4 cut(s)	68, 119, 127, 155
NspI	RCATGY	1 cut(s)	68
PctI	GAATGC	1 cut(s)	152
PkrI	GCNGC	2 cut(s)	106, 109
PleI	GAGTC	1 cut(s)	21
PpsI	GAGTC	1 cut(s)	21
PspFI	CCCAGC	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	127
PstI	CTGCAG	1 cut(s)	112
SatI	GCNGC	2 cut(s)	105, 108
Sau3AI	GATC	2 cut(s)	112, 137
Sau96I	GGNCC	1 cut(s)	127
SchI	GAGTC	1 cut(s)	22
SetI	ASST	3 cut(s)	132, 199, 204
SfaNI	GCATC	1 cut(s)	129
SfcI	CTRYAG	2 cut(s)	108, 173
SinI	GGWCC	1 cut(s)	127
SsiI	CCGC	1 cut(s)	105
SspMI	CTAG	2 cut(s)	23, 203
StyI	CCWWGG	1 cut(s)	88
TauI	GCSGC	1 cut(s)	107
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	2 cut(s)	17, 177
VpaK11BI	GGWCC	1 cut(s)	127
XceI	RCATGY	1 cut(s)	68
XmiI	GTMKAC	1 cut(s)	172
XspI	CTAG	2 cut(s)	23, 203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.