Rroxscaffold_6G00409170

Phytosulfokines

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0004634
Physical Location & Seq
Forward (+)
31739683 .. 31740391
709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00409170.1

Sequence Viewer

Length: 237 bp
ATGAAGAAGCAGAGTCTCCTCCTCGTCATCTTTTCTCTCTTTCTTTTCCTCGTCATCTCATCACATGCTCGTCATCTTCCACATGACCAAGGCTCATCAACTGCTGCTGCAGATCATGACATCATGGACCTAATGGGGTCGGAAGAATGCCATGAGAAAGATGAAGAGTGTCTACAGAGAAGGATGATTGCAGAAGCTCACCTGGATTATATCTACACCCAGCACCAGAAGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PSK

Protein Analysis

78

Amino Acids

9.01

Weight (kDa)

5.7

Isoelectric Point (pI)

63.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSK PF06404 21 - 78 2.9e-17 Phytosulfokine precursor protein (PSK)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 172
AjnI CCWGG 1 cut(s) 201
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
Alw26I GTCTC 1 cut(s) 20
ApeKI GCWGC 2 cut(s) 104, 107
AspS9I GGNCC 1 cut(s) 127
AsuHPI GGTGA 1 cut(s) 191
AvaII GGWCC 1 cut(s) 127
BarI GAAGNNNNNNTAC 2 cut(s) 156, 188
BbvI GCAGC 2 cut(s) 91, 94
BciT130I CCWGG 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 20
BfmI CTRYAG 2 cut(s) 108, 173
BisI GCNGC 2 cut(s) 105, 108
BlsI GCNGC 2 cut(s) 106, 109
Bme1390I CCNGG 1 cut(s) 203
Bme18I GGWCC 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 127
BmrFI CCNGG 1 cut(s) 203
BsaJI CCNNGG 1 cut(s) 88
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 1 cut(s) 88
BseGI GGATG 1 cut(s) 189
BseRI GAGGAG 2 cut(s) 8, 11
BseXI GCAGC 2 cut(s) 91, 94
BseYI CCCAGC 1 cut(s) 219
BsmAI GTCTC 1 cut(s) 20
BsmI GAATGC 1 cut(s) 152
Bsp143I GATC 1 cut(s) 112
BspHI TCATGA 1 cut(s) 115
BspMAI CTGCAG 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 1 cut(s) 112
BssT1I CCWWGG 1 cut(s) 88
Bst2UI CCWGG 1 cut(s) 203
Bst6I CTCTTC 1 cut(s) 159
BstF5I GGATG 1 cut(s) 189
BstKTI GATC 1 cut(s) 115
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 1 cut(s) 112
BstMWI GCNNNNNNNGC 1 cut(s) 229
BstNI CCWGG 1 cut(s) 203
BstNSI RCATGY 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 201
BstSFI CTRYAG 2 cut(s) 108, 173
BstV1I GCAGC 2 cut(s) 91, 94
BtsCI GGATG 1 cut(s) 189
CciI TCATGA 1 cut(s) 115
Cfr13I GGNCC 1 cut(s) 127
CviAII CATG 5 cut(s) 65, 83, 116, 124, 152
CviJI RGCY 3 cut(s) 93, 197, 232
CviKI_1 RGCY 3 cut(s) 93, 197, 232
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 88
Eco47I GGWCC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 88
FaeI CATG 5 cut(s) 68, 86, 119, 127, 155
FaiI YATR 7 cut(s) 66, 84, 117, 125, 153, 210, 235
FatI CATG 5 cut(s) 64, 82, 115, 123, 151
FblI GTMKAC 1 cut(s) 172
Fnu4HI GCNGC 2 cut(s) 105, 108
FokI GGATG 1 cut(s) 196
Fsp4HI GCNGC 2 cut(s) 105, 108
GluI GCNGC 2 cut(s) 105, 108
GsaI CCCAGC 1 cut(s) 223
Hin1II CATG 5 cut(s) 68, 86, 119, 127, 155
HinfI GANTC 1 cut(s) 13
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 1 cut(s) 173
Hpy188I TCNGA 1 cut(s) 142
Hpy188III TCNNGA 1 cut(s) 116
Hpy8I GTNNAC 1 cut(s) 173
HpyAV CCTTC 1 cut(s) 174
HpyCH4V TGCA 2 cut(s) 110, 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 229
Hsp92II CATG 5 cut(s) 68, 86, 119, 127, 155
Kzo9I GATC 1 cut(s) 112
LpnPI CCDG 3 cut(s) 188, 215, 233
Lsp1109I GCAGC 2 cut(s) 91, 94
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MboII GAAGA 4 cut(s) 16, 68, 155, 176
MlyI GAGTC 1 cut(s) 22
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 3 cut(s) 29, 32, 59
MspR9I CCNGG 1 cut(s) 203
Mva1269I GAATGC 1 cut(s) 152
MvaI CCWGG 1 cut(s) 203
MwoI GCNNNNNNNGC 1 cut(s) 229
NdeII GATC 1 cut(s) 112
NlaIII CATG 5 cut(s) 68, 86, 119, 127, 155
NspI RCATGY 1 cut(s) 68
PagI TCATGA 1 cut(s) 115
PctI GAATGC 1 cut(s) 152
PkrI GCNGC 2 cut(s) 106, 109
PleI GAGTC 1 cut(s) 21
PpsI GAGTC 1 cut(s) 21
Psp6I CCWGG 1 cut(s) 201
PspFI CCCAGC 1 cut(s) 219
PspGI CCWGG 1 cut(s) 201
PspPI GGNCC 1 cut(s) 127
PstI CTGCAG 1 cut(s) 112
SatI GCNGC 2 cut(s) 105, 108
Sau3AI GATC 1 cut(s) 112
Sau96I GGNCC 1 cut(s) 127
SchI GAGTC 1 cut(s) 22
ScrFI CCNGG 1 cut(s) 203
SetI ASST 3 cut(s) 132, 199, 204
SfcI CTRYAG 2 cut(s) 108, 173
SinI GGWCC 1 cut(s) 127
StyD4I CCNGG 1 cut(s) 201
StyI CCWWGG 1 cut(s) 88
TseI GCWGC 2 cut(s) 104, 107
TspDTI ATGAA 2 cut(s) 17, 177
VpaK11BI GGWCC 1 cut(s) 127
XceI RCATGY 1 cut(s) 68
XmiI GTMKAC 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.