MD12G1018200.v1.1

Phytosulfokines

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0004634
Physical Location & Seq
Reverse (-)
1740431 .. 1741485
1055 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1018200.v1.1.491

Sequence Viewer

Length: 249 bp
ATGAAGCAGATGAAGAATTACCAAAACTTTCTCATATTTTCTGTCTTTATTTTTCTTCTTCTCTCCAACCCATCATCTGCTCGTGCTCGTCTTCAGCAGCAAAACAAAGCTTCCCTAACTGGAAGCAATGATCTTGTAAATCTGATGGGATCAGAAGAATGCGATGAGAAAGATGAAGAGTGTCTGCGGAGAAGGATGATTGCTGAAGCTCACTTGGATTATATTTACACCCAAAACCATAAGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PSK

Protein Analysis

83

Amino Acids

9.58

Weight (kDa)

6.71

Isoelectric Point (pI)

66.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSK PF06404 28 - 82 4.7e-18 Phytosulfokine precursor protein (PSK)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 187
AclWI GGATC 1 cut(s) 157
AcuI CTGAAG 2 cut(s) 77, 225
AluBI AGCT 2 cut(s) 110, 209
AluI AGCT 2 cut(s) 110, 209
Alw21I GWGCWC 1 cut(s) 88
AlwI GGATC 1 cut(s) 157
ApeKI GCWGC 1 cut(s) 97
BauI CACGAG 1 cut(s) 81
BbsI GAAGAC 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 88
BbvI GCAGC 1 cut(s) 109
BccI CCATC 2 cut(s) 79, 139
BisI GCNGC 1 cut(s) 98
BlsI GCNGC 1 cut(s) 99
BpiI GAAGAC 1 cut(s) 83
Bse1I ACTGG 1 cut(s) 124
Bse3DI GCAATG 1 cut(s) 133
BseGI GGATG 1 cut(s) 201
BseMI GCAATG 1 cut(s) 133
BseNI ACTGG 1 cut(s) 124
BseXI GCAGC 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 88
BsmI GAATGC 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 88
Bsp143I GATC 2 cut(s) 130, 149
BspACI CCGC 1 cut(s) 187
BspPI GGATC 1 cut(s) 157
BsrDI GCAATG 1 cut(s) 133
BsrI ACTGG 1 cut(s) 124
BssMI GATC 2 cut(s) 130, 149
BssSI CACGAG 1 cut(s) 81
Bst2BI CACGAG 1 cut(s) 81
Bst6I CTCTTC 1 cut(s) 171
BstF5I GGATG 1 cut(s) 201
BstKTI GATC 2 cut(s) 133, 152
BstMBI GATC 2 cut(s) 130, 149
BstV1I GCAGC 1 cut(s) 109
BstV2I GAAGAC 1 cut(s) 83
BtgZI GCGATG 1 cut(s) 177
BtsCI GGATG 1 cut(s) 201
CviJI RGCY 3 cut(s) 110, 209, 244
CviKI_1 RGCY 3 cut(s) 110, 209, 244
DpnI GATC 2 cut(s) 132, 151
DpnII GATC 2 cut(s) 130, 149
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco57I CTGAAG 2 cut(s) 77, 225
FaiI YATR 4 cut(s) 35, 222, 240, 247
Fnu4HI GCNGC 1 cut(s) 98
FokI GGATG 1 cut(s) 208
Fsp4HI GCNGC 1 cut(s) 98
GluI GCNGC 1 cut(s) 98
HindIII AAGCTT 1 cut(s) 108
Hpy188I TCNGA 2 cut(s) 144, 154
HpyAV CCTTC 1 cut(s) 186
Kzo9I GATC 2 cut(s) 130, 149
LpnPI CCDG 1 cut(s) 105
Lsp1109I GCAGC 1 cut(s) 109
MalI GATC 2 cut(s) 132, 151
MboI GATC 2 cut(s) 130, 149
MboII GAAGA 6 cut(s) 25, 47, 50, 83, 167, 188
MhlI GDGCHC 1 cut(s) 88
MluCI AATT 1 cut(s) 16
MmeI TCCRAC 1 cut(s) 90
Mva1269I GAATGC 1 cut(s) 164
NdeII GATC 2 cut(s) 130, 149
PctI GAATGC 1 cut(s) 164
PkrI GCNGC 1 cut(s) 99
SatI GCNGC 1 cut(s) 98
Sau3AI GATC 2 cut(s) 130, 149
SduI GDGCHC 1 cut(s) 88
SetI ASST 2 cut(s) 112, 211
SgeI CNNG 6 cut(s) 93, 95, 99, 132, 146, 226
Sse9I AATT 1 cut(s) 16
SsiI CCGC 1 cut(s) 187
TasI AATT 1 cut(s) 16
TseI GCWGC 1 cut(s) 97
TspDTI ATGAA 3 cut(s) 17, 26, 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.