MD11G1157500.v1.1

phytosulfokines 6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0004634
Physical Location & Seq
Reverse (-)
15199717 .. 15200525
809 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1157500.v1.1.491

Sequence Viewer

Length: 285 bp
ATGAAGCAAAGCTTCAAATCAGGCGCTGTCGTTGTTCTCTCCATATTTTTCATCCTTTTTTCCTCAACATTATCGATCCGTCTCTTAGTGTACAAAGAAGGACAAGAGAAGGTGAAGCTCAATGAAATGGTTAATGGGGGTTCACTTGTAGAATTGAAAGGCAGTGAACTAATGAATCTTATGGGGGTGGAGGATTGTGTTGATGGAGATGAGGACTGTTCAAAGAGAAGGATAATGGCAGAAGCTCACTTGGACTACATCTACACACAGCACCATAAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PSK

Protein Analysis

95

Amino Acids

10.6

Weight (kDa)

5.87

Isoelectric Point (pI)

29.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSK PF06404 16 - 94 4.1e-20 Phytosulfokine precursor protein (PSK)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 70
AfaI GTAC 1 cut(s) 92
AgsI TTSAA 3 cut(s) 16, 157, 222
AluBI AGCT 3 cut(s) 12, 118, 245
AluI AGCT 3 cut(s) 12, 118, 245
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 1 cut(s) 70
AlwNI CAGNNNCTG 1 cut(s) 26
AspLEI GCGC 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 124
BccI CCATC 1 cut(s) 197
BcoDI GTCTC 1 cut(s) 86
BfoI RGCGCY 1 cut(s) 27
Bsa29I ATCGAT 1 cut(s) 74
BseCI ATCGAT 1 cut(s) 74
BseGI GGATG 1 cut(s) 51
BshVI ATCGAT 1 cut(s) 74
BsmAI GTCTC 1 cut(s) 86
BsmBI CGTCTC 1 cut(s) 86
Bsp1407I TGTACA 1 cut(s) 90
Bsp143I GATC 1 cut(s) 75
BspDI ATCGAT 1 cut(s) 74
BspPI GGATC 1 cut(s) 70
BsrGI TGTACA 1 cut(s) 90
BssMI GATC 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 218
BstAUI TGTACA 1 cut(s) 90
BstDEI CTNAG 1 cut(s) 85
BstF5I GGATG 1 cut(s) 51
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 1 cut(s) 78
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 1 cut(s) 75
BstMWI GCNNNNNNNGC 1 cut(s) 277
Bsu15I ATCGAT 1 cut(s) 74
BsuTUI ATCGAT 1 cut(s) 74
BtsCI GGATG 1 cut(s) 51
BtsI GCAGTG 1 cut(s) 169
BtsIMutI CAGTG 1 cut(s) 169
CaiI CAGNNNCTG 1 cut(s) 26
CfoI GCGC 1 cut(s) 26
ClaI ATCGAT 1 cut(s) 74
Csp6I GTAC 1 cut(s) 91
CviJI RGCY 4 cut(s) 12, 118, 245, 280
CviKI_1 RGCY 4 cut(s) 12, 118, 245, 280
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 1 cut(s) 85
DpnI GATC 1 cut(s) 77
DpnII GATC 1 cut(s) 75
Esp3I CGTCTC 1 cut(s) 86
FaiI YATR 3 cut(s) 44, 182, 276
FalI AAGNNNNNCTT 1 cut(s) 28
FokI GGATG 1 cut(s) 38
GlaI GCGC 1 cut(s) 25
HaeII RGCGCY 1 cut(s) 27
HhaI GCGC 1 cut(s) 26
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HindIII AAGCTT 1 cut(s) 10
HinfI GANTC 1 cut(s) 175
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 3 cut(s) 91, 143, 167
Hpy8I GTNNAC 3 cut(s) 91, 143, 167
HpyAV CCTTC 3 cut(s) 92, 103, 222
HpyCH4III ACNGT 1 cut(s) 218
HpyF10VI GCNNNNNNNGC 1 cut(s) 277
HpyF3I CTNAG 1 cut(s) 85
HspAI GCGC 1 cut(s) 24
Kzo9I GATC 1 cut(s) 75
LpnPI CCDG 1 cut(s) 6
MalI GATC 1 cut(s) 77
MboI GATC 1 cut(s) 75
MluCI AATT 1 cut(s) 152
MnlI CCTC 3 cut(s) 73, 184, 205
MseI TTAA 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 277
NdeII GATC 1 cut(s) 75
PfeI GAWTC 1 cut(s) 175
PstNI CAGNNNCTG 1 cut(s) 26
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
SaqAI TTAA 1 cut(s) 132
Sau3AI GATC 1 cut(s) 75
SetI ASST 4 cut(s) 14, 114, 120, 247
SgeI CNNG 4 cut(s) 33, 116, 158, 262
Sse9I AATT 1 cut(s) 152
TaaI ACNGT 1 cut(s) 218
TaqI TCGA 1 cut(s) 74
TasI AATT 1 cut(s) 152
TatI WGTACW 1 cut(s) 90
TfiI GAWTC 1 cut(s) 175
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 1 cut(s) 169
TspDTI ATGAA 4 cut(s) 17, 40, 138, 188
TspGWI ACGGA 1 cut(s) 68
TspRI CASTG 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.