pycom12g01520

PAN domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Forward (+)
1245978 .. 1247938
1961 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g01520.3

Sequence Viewer

Length: 1563 bp
ATGTTGCAAGTTGCAAACAGTCAATCATCTCTCTCTCTCTCTCTGATATTCATTTCCATTATGGAAACGTTCACCAACTCAGTCACTCGTCTAAGTTCACCTCAGCTTCTTTTTCTCACACTTGTTTTACTCTACGTCACATCACCACCTTGCGCCACCTCTGCCCAAGCGGAGCTTTCCAGAGGCTTCAAAGCCACTCCGGACCCTTCAATCCAAACCTTCCAACCTGTGCTCACTGACCCAACCGGCAACTTTTCACTGGGTTTCCTCCGAGTCAACAAAACCCAACTCGCTCTGGCCCTCCTCCACGTGCCATCCTCCGACCCTGTCTGGCTCGCTAACCCTGCCCAACTCGCCCGCTGGTCCGACCGCACGACCCTCCTCTTCAACGGTAGCCTAGTCCTCTCAGATCCCCAGTCGAAGGTATTCTGGTCAACTCACTCCGAAATCGGCGACCGGCTTGCAGTCCTCGACACCTCTAACGTCCAAATCCAAACGACCCAGGACACCGTTCTATGGCAGAGTTTTGACTTTCCAACAAATACCCTCGTCGAGAATCAGAATTTCACATCGACTATGAAGCTTGTCTCATCGAACGGCCTATACTCAATGCGATTGGGGAACAATTTCATGGGTCTGTTCGCCAAGTTCAAACCGGGTTCAAATGCAGACCAAATGTACTGGAAACGCAAAGCCATGGAAGCCAAGGCCAAAGTCGTCGAAGGAAAAGGACCTATTTACGCCCGTGTTGATCCGGACGGGTTCATTGGAATGTACCAAACCGGGAACCCAACTCCGGTCGACATCCAAGCGTTCATGACCTTTCCAAGGCTAATCAACGGCCTCCGTAAGGTCAGGTTGGAAGCGGACGGAAACCTCAAGGCGTATTACTGGGACGGTTCCAACTGGGCTTTGGATTTCCAGGCGATTGCCGCCACGTGCGAGCTTCCCAGTCCATGCGGTTCGTTCGGTTTGTGCGGGGCCGGGAATGGTTCGTGTTCGTGTTTGAATAACCAGACGGAGTTCCATTCCGGTGAGTGTTTTCCGGTTCAGACCGGCGACTTCTGCGGTTCCGGATGGCGGGAAATTAAAAGCTTCCGGGTTTTAAGGAGAAACGGCGTGGAGCTGCCGTACAAGGAGTTGATGGAGTATAAAATGATGTCGTCTTACGGTGAATGCGAAAGAACTTGTGAAAGGAACTGTAGCTGTTGGGGCGCGGTGTACAATAACGGGTCCGGGTTTTGTTACTTGATGGATTACCCGATCCAGAGTTTGGTGGGCGTTGGGGATGAGAGTAAGATGGGTTATTTTAAGGTGCGGGAGGGTGCAGGGAGGAAGAAAATAAATGTGGGTGTGGGGGTTGGGATTGGGGTGGTTTGTGTGGCGCTTTTGATATTTGTTGGGGTAGTGGGTGTTTGGAGGTTTAGGGCAATGATGTATGAAATGACATTTTTTTGGTTTGGGGCCTTTGGAGGATGGAGTTTAACCGACATTGATGTTGATCACCAACTCTTTTGTGTCTGTGATGGTGGGGGTCCAAGACTTAATCCTTATTGTATTTAA

Protein Analysis

521

Amino Acids

57.48

Weight (kDa)

6.87

Isoelectric Point (pI)

28.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013446)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1273
AccI GTMKAC 1 cut(s) 801
AccII CGCG 1 cut(s) 1217
AccIII TCCGGA 3 cut(s) 199, 754, 1073
AclI AACGTT 1 cut(s) 68
AclWI GGATC 3 cut(s) 404, 746, 1258
AcsI RAATTY 1 cut(s) 562
AcvI CACGTG 2 cut(s) 310, 939
AfaI GTAC 4 cut(s) 680, 776, 1133, 1223
AfiI CCNNNNNNNGG 7 cut(s) 421, 516, 796, 828, 850, 1080, 1273
AgsI TTSAA 6 cut(s) 190, 210, 388, 652, 663, 1009
AjnI CCWGG 2 cut(s) 501, 921
AluBI AGCT 7 cut(s) 106, 175, 583, 946, 1095, 1126, 1206
AluI AGCT 7 cut(s) 106, 175, 583, 946, 1095, 1126, 1206
Alw21I GWGCWC 1 cut(s) 234
Alw26I GTCTC 1 cut(s) 592
AlwI GGATC 3 cut(s) 404, 746, 1258
Aor13HI TCCGGA 3 cut(s) 199, 754, 1073
AoxI GGCC 6 cut(s) 297, 598, 708, 841, 981, 1464
ApeKI GCWGC 1 cut(s) 1126
ApoI RAATTY 1 cut(s) 562
Asp700I GAANNNNTTC 2 cut(s) 425, 626
AspLEI GCGC 3 cut(s) 155, 1217, 1387
AspS9I GGNCC 8 cut(s) 202, 298, 363, 731, 981, 1233, 1464, 1535
AsuC2I CCSGG 5 cut(s) 657, 784, 985, 1100, 1237
AsuHPI GGTGA 6 cut(s) 64, 90, 135, 1046, 1184, 1496
AvaII GGWCC 5 cut(s) 202, 363, 731, 1233, 1535
BbrPI CACGTG 2 cut(s) 310, 939
Bbv12I GWGCWC 1 cut(s) 234
BbvCI CCTCAGC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 1113
BccI CCATC 7 cut(s) 322, 1071, 1138, 1246, 1294, 1470, 1520
BceAI ACGGC 4 cut(s) 613, 856, 1114, 1132
BcgI CGANNNNNNTGC 2 cut(s) 443, 477
BciT130I CCWGG 2 cut(s) 503, 923
BclI TGATCA 1 cut(s) 1501
BcnI CCSGG 5 cut(s) 657, 784, 985, 1100, 1237
BcoDI GTCTC 1 cut(s) 592
BfaI CTAG 1 cut(s) 398
BfmI CTRYAG 1 cut(s) 1201
BfoI RGCGCY 1 cut(s) 1388
BisI GCNGC 2 cut(s) 933, 1127
BlsI GCNGC 2 cut(s) 934, 1128
Bme1390I CCNGG 7 cut(s) 503, 657, 784, 923, 985, 1100, 1237
Bme18I GGWCC 5 cut(s) 202, 363, 731, 1233, 1535
BmgT120I GGNCC 8 cut(s) 202, 298, 363, 731, 981, 1233, 1464, 1535
BmiI GGNNCC 8 cut(s) 204, 788, 901, 982, 1072, 1234, 1465, 1536
BmrFI CCNGG 7 cut(s) 503, 657, 784, 923, 985, 1100, 1237
BmrI ACTGGG 5 cut(s) 269, 409, 901, 916, 945
BmuI ACTGGG 5 cut(s) 269, 409, 901, 916, 945
Bpu10I CCTNAGC 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 863
BpuMI CCSGG 5 cut(s) 657, 784, 985, 1100, 1237
BsaAI YACGTR 2 cut(s) 310, 939
BsaBI GATNNNNATC 1 cut(s) 1500
BsaJI CCNNGG 4 cut(s) 501, 696, 705, 827
BsaWI WCCGGW 6 cut(s) 199, 754, 796, 1031, 1045, 1073
BsaXI ACNNNNNCTCC 2 cut(s) 1115, 1145
Bsc4I CCNNNNNNNGG 7 cut(s) 421, 516, 796, 828, 850, 1080, 1273
Bse118I RCCGGY 3 cut(s) 245, 456, 1055
Bse1I ACTGG 6 cut(s) 264, 415, 686, 896, 911, 951
Bse3DI GCAATG 1 cut(s) 1437
Bse8I GATNNNNATC 1 cut(s) 1500
BseAI TCCGGA 3 cut(s) 199, 754, 1073
BseBI CCWGG 2 cut(s) 503, 923
BseDI CCNNGG 4 cut(s) 501, 696, 705, 827
BseGI GGATG 5 cut(s) 314, 804, 1082, 1294, 1481
BseJI GATNNNNATC 1 cut(s) 1500
BseLI CCNNNNNNNGG 7 cut(s) 421, 516, 796, 828, 850, 1080, 1273
BseMI GCAATG 1 cut(s) 1437
BseMII CTCAG 3 cut(s) 93, 116, 420
BseNI ACTGG 6 cut(s) 264, 415, 686, 896, 911, 951
BseRI GAGGAG 2 cut(s) 293, 371
BseXI GCAGC 1 cut(s) 1113
BsgI GTGCAG 1 cut(s) 1347
Bsh1236I CGCG 1 cut(s) 1217
Bsh1285I CGRYCG 3 cut(s) 370, 457, 801
BshFI GGCC 6 cut(s) 299, 600, 710, 843, 983, 1466
BsiEI CGRYCG 3 cut(s) 370, 457, 801
BsiHKAI GWGCWC 1 cut(s) 234
BslFI GGGAC 1 cut(s) 908
BslI CCNNNNNNNGG 7 cut(s) 421, 516, 796, 828, 850, 1080, 1273
BsmAI GTCTC 1 cut(s) 592
BsmFI GGGAC 1 cut(s) 908
BsmI GAATGC 1 cut(s) 1181
BsnI GGCC 6 cut(s) 299, 600, 710, 843, 983, 1466
Bsp1286I GDGCHC 1 cut(s) 234
Bsp13I TCCGGA 3 cut(s) 199, 754, 1073
Bsp1407I TGTACA 1 cut(s) 1221
Bsp143I GATC 4 cut(s) 409, 751, 1263, 1501
Bsp19I CCATGG 1 cut(s) 696
BspANI GGCC 6 cut(s) 299, 600, 710, 843, 983, 1466
BspCNI CTCAG 3 cut(s) 92, 115, 419
BspEI TCCGGA 3 cut(s) 199, 754, 1073
BspFNI CGCG 1 cut(s) 1217
BspHI TCATGA 1 cut(s) 816
BspLI GGNNCC 8 cut(s) 204, 788, 901, 982, 1072, 1234, 1465, 1536
BspPI GGATC 3 cut(s) 404, 746, 1258
BsrDI GCAATG 1 cut(s) 1437
BsrFI RCCGGY 3 cut(s) 245, 456, 1055
BsrGI TGTACA 1 cut(s) 1221
BsrI ACTGG 6 cut(s) 264, 415, 686, 896, 911, 951
BssAI RCCGGY 3 cut(s) 245, 456, 1055
BssECI CCNNGG 4 cut(s) 501, 696, 705, 827
BssMI GATC 4 cut(s) 409, 751, 1263, 1501
BssT1I CCWWGG 3 cut(s) 696, 705, 827
Bst2UI CCWGG 2 cut(s) 503, 923
Bst4CI ACNGT 6 cut(s) 20, 392, 511, 899, 1172, 1202
Bst6I CTCTTC 1 cut(s) 389
BstAUI TGTACA 1 cut(s) 1221
BstBAI YACGTR 2 cut(s) 310, 939
BstC8I GCNNGC 4 cut(s) 336, 358, 462, 944
BstDEI CTNAG 4 cut(s) 79, 92, 102, 406
BstDSI CCRYGG 1 cut(s) 696
BstENI CCTNNNNNAGG 2 cut(s) 826, 848
BstF5I GGATG 5 cut(s) 314, 804, 1082, 1294, 1481
BstFNI CGCG 1 cut(s) 1217
BstH2I RGCGCY 1 cut(s) 1388
BstHHI GCGC 3 cut(s) 155, 1217, 1387
BstKTI GATC 4 cut(s) 412, 754, 1266, 1504
BstMAI GTCTC 1 cut(s) 592
BstMBI GATC 4 cut(s) 409, 751, 1263, 1501
BstMCI CGRYCG 3 cut(s) 370, 457, 801
BstMWI GCNNNNNNNGC 7 cut(s) 161, 344, 353, 701, 932, 1065, 1212
BstNI CCWGG 2 cut(s) 503, 923
BstSCI CCNGG 7 cut(s) 501, 655, 782, 921, 983, 1098, 1235
BstSFI CTRYAG 1 cut(s) 1201
BstUI CGCG 1 cut(s) 1217
BstV1I GCAGC 1 cut(s) 1113
BstX2I RGATCY 1 cut(s) 409
BstYI RGATCY 1 cut(s) 409
BsuRI GGCC 6 cut(s) 299, 600, 710, 843, 983, 1466
BtgI CCRYGG 1 cut(s) 696
BtsCI GGATG 5 cut(s) 314, 804, 1082, 1294, 1481
BtsIMutI CAGTG 2 cut(s) 234, 257
Cac8I GCNNGC 4 cut(s) 336, 358, 462, 944
CciI TCATGA 1 cut(s) 816
CfoI GCGC 3 cut(s) 155, 1217, 1387
Cfr10I RCCGGY 3 cut(s) 245, 456, 1055
Cfr13I GGNCC 8 cut(s) 202, 298, 363, 731, 981, 1233, 1464, 1535
Csp6I GTAC 4 cut(s) 679, 775, 1132, 1222
CviAII CATG 4 cut(s) 631, 697, 817, 957
CviQI GTAC 4 cut(s) 679, 775, 1132, 1222
DdeI CTNAG 4 cut(s) 79, 92, 102, 406
DpnI GATC 4 cut(s) 411, 753, 1265, 1503
DpnII GATC 4 cut(s) 409, 751, 1263, 1501
Eam1104I CTCTTC 1 cut(s) 389
EarI CTCTTC 1 cut(s) 389
Eco130I CCWWGG 3 cut(s) 696, 705, 827
Eco47I GGWCC 5 cut(s) 202, 363, 731, 1233, 1535
Eco72I CACGTG 2 cut(s) 310, 939
EcoNI CCTNNNNNAGG 2 cut(s) 826, 848
EcoO109I RGGNCCY 2 cut(s) 731, 1464
EcoRII CCWGG 2 cut(s) 501, 921
EcoT14I CCWWGG 3 cut(s) 696, 705, 827
ErhI CCWWGG 3 cut(s) 696, 705, 827
FaeI CATG 4 cut(s) 634, 700, 820, 960
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FaqI GGGAC 1 cut(s) 908
FatI CATG 4 cut(s) 630, 696, 816, 956
FauI CCCGC 4 cut(s) 365, 971, 1074, 1311
FbaI TGATCA 1 cut(s) 1501
FblI GTMKAC 1 cut(s) 801
Fnu4HI GCNGC 2 cut(s) 933, 1127
FokI GGATG 5 cut(s) 301, 791, 1089, 1301, 1488
Fsp4HI GCNGC 2 cut(s) 933, 1127
FspBI CTAG 1 cut(s) 398
GlaI GCGC 3 cut(s) 154, 1216, 1386
GluI GCNGC 2 cut(s) 933, 1127
HaeII RGCGCY 1 cut(s) 1388
HaeIII GGCC 6 cut(s) 299, 600, 710, 843, 983, 1466
HhaI GCGC 3 cut(s) 155, 1217, 1387
Hin1II CATG 4 cut(s) 634, 700, 820, 960
Hin6I GCGC 3 cut(s) 153, 1215, 1385
HinP1I GCGC 3 cut(s) 153, 1215, 1385
HincII GTYRAC 3 cut(s) 277, 435, 802
HindII GTYRAC 3 cut(s) 277, 435, 802
HindIII AAGCTT 2 cut(s) 581, 1093
HinfI GANTC 2 cut(s) 273, 556
HphI GGTGA 6 cut(s) 64, 90, 135, 1046, 1184, 1496
Hpy166II GTNNAC 6 cut(s) 72, 98, 277, 435, 802, 1222
Hpy188I TCNGA 8 cut(s) 45, 272, 322, 367, 409, 445, 561, 1053
Hpy188III TCNNGA 7 cut(s) 180, 200, 553, 755, 817, 1074, 1267
Hpy8I GTNNAC 6 cut(s) 72, 98, 277, 435, 802, 1222
Hpy99I CGWCG 2 cut(s) 554, 722
HpyAV CCTTC 4 cut(s) 216, 229, 415, 716
HpyCH4III ACNGT 6 cut(s) 20, 392, 511, 899, 1172, 1202
HpyCH4IV ACGT 5 cut(s) 68, 135, 309, 483, 938
HpyCH4V TGCA 5 cut(s) 7, 14, 464, 668, 1328
HpyF10VI GCNNNNNNNGC 7 cut(s) 161, 344, 353, 701, 932, 1065, 1212
HpyF3I CTNAG 4 cut(s) 79, 92, 102, 406
HpySE526I ACGT 5 cut(s) 68, 135, 309, 483, 938
Hsp92II CATG 4 cut(s) 634, 700, 820, 960
HspAI GCGC 3 cut(s) 153, 1215, 1385
Kpn2I TCCGGA 3 cut(s) 199, 754, 1073
Ksp22I TGATCA 1 cut(s) 1501
Kzo9I GATC 4 cut(s) 409, 751, 1263, 1501
LmnI GCTCC 2 cut(s) 172, 1123
Lsp1109I GCAGC 1 cut(s) 1113
MaeI CTAG 1 cut(s) 398
MaeII ACGT 5 cut(s) 68, 135, 309, 483, 938
MaeIII GTNAC 3 cut(s) 82, 136, 1244
MalI GATC 4 cut(s) 411, 753, 1265, 1503
MboI GATC 4 cut(s) 409, 751, 1263, 1501
MboII GAAGA 2 cut(s) 376, 1348
MflI RGATCY 1 cut(s) 409
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 3 cut(s) 562, 625, 1086
MlyI GAGTC 1 cut(s) 282
MmeI TCCRAC 6 cut(s) 247, 345, 390, 560, 840, 927
MroI TCCGGA 3 cut(s) 199, 754, 1073
MroXI GAANNNNTTC 2 cut(s) 425, 626
MseI TTAA 6 cut(s) 1089, 1106, 1311, 1484, 1545, 1561
MslI CAYNNNNRTG 2 cut(s) 770, 1032
MspA1I CMGCKG 1 cut(s) 360
MspR9I CCNGG 7 cut(s) 503, 657, 784, 923, 985, 1100, 1237
Mva1269I GAATGC 1 cut(s) 1181
MvaI CCWGG 2 cut(s) 503, 923
MvnI CGCG 1 cut(s) 1217
MwoI GCNNNNNNNGC 7 cut(s) 161, 344, 353, 701, 932, 1065, 1212
NciI CCSGG 5 cut(s) 657, 784, 985, 1100, 1237
NcoI CCATGG 1 cut(s) 696
NdeII GATC 4 cut(s) 409, 751, 1263, 1501
NlaIII CATG 4 cut(s) 634, 700, 820, 960
NlaIV GGNNCC 8 cut(s) 204, 788, 901, 982, 1072, 1234, 1465, 1536
NmuCI GTSAC 2 cut(s) 82, 136
PagI TCATGA 1 cut(s) 816
PcsI WCGNNNNNNNCGW 1 cut(s) 1176
PctI GAATGC 1 cut(s) 1181
PdmI GAANNNNTTC 2 cut(s) 425, 626
PfeI GAWTC 1 cut(s) 556
PflFI GACNNNGTC 1 cut(s) 326
PflMI CCANNNNNTGG 1 cut(s) 1273
PkrI GCNGC 2 cut(s) 934, 1128
PleI GAGTC 1 cut(s) 281
PmaCI CACGTG 2 cut(s) 310, 939
PmlI CACGTG 2 cut(s) 310, 939
PpsI GAGTC 1 cut(s) 281
Ppu21I YACGTR 2 cut(s) 310, 939
PpuMI RGGWCCY 1 cut(s) 731
Psp1406I AACGTT 1 cut(s) 68
Psp5II RGGWCCY 1 cut(s) 731
Psp6I CCWGG 2 cut(s) 501, 921
PspCI CACGTG 2 cut(s) 310, 939
PspGI CCWGG 2 cut(s) 501, 921
PspN4I GGNNCC 8 cut(s) 204, 788, 901, 982, 1072, 1234, 1465, 1536
PspPI GGNCC 8 cut(s) 202, 298, 363, 731, 981, 1233, 1464, 1535
PspPPI RGGWCCY 1 cut(s) 731
PsrI GAACNNNNNNTAC 2 cut(s) 587, 619
PsuI RGATCY 1 cut(s) 409
PsyI GACNNNGTC 1 cut(s) 326
RsaI GTAC 4 cut(s) 680, 776, 1133, 1223
RsaNI GTAC 4 cut(s) 679, 775, 1132, 1222
RseI CAYNNNNRTG 2 cut(s) 770, 1032
SalI GTCGAC 1 cut(s) 800
SaqAI TTAA 6 cut(s) 1089, 1106, 1311, 1484, 1545, 1561
SatI GCNGC 2 cut(s) 933, 1127
Sau3AI GATC 4 cut(s) 409, 751, 1263, 1501
Sau96I GGNCC 8 cut(s) 202, 298, 363, 731, 981, 1233, 1464, 1535
SchI GAGTC 1 cut(s) 282
ScrFI CCNGG 7 cut(s) 503, 657, 784, 923, 985, 1100, 1237
SduI GDGCHC 1 cut(s) 234
SfcI CTRYAG 1 cut(s) 1201
SinI GGWCC 5 cut(s) 202, 363, 731, 1233, 1535
SmiMI CAYNNNNRTG 2 cut(s) 770, 1032
SmlI CTYRAG 1 cut(s) 878
SmoI CTYRAG 1 cut(s) 878
Sse9I AATT 3 cut(s) 562, 625, 1086
SspMI CTAG 1 cut(s) 398
StyD4I CCNGG 7 cut(s) 501, 655, 782, 921, 983, 1098, 1235
StyI CCWWGG 3 cut(s) 696, 705, 827
TaaI ACNGT 6 cut(s) 20, 392, 511, 899, 1172, 1202
TaiI ACGT 5 cut(s) 71, 138, 312, 486, 941
TaqI TCGA 7 cut(s) 419, 471, 552, 572, 593, 720, 801
TasI AATT 3 cut(s) 562, 625, 1086
TatI WGTACW 2 cut(s) 678, 1221
TauI GCSGC 1 cut(s) 935
TfiI GAWTC 1 cut(s) 556
Tru1I TTAA 6 cut(s) 1089, 1106, 1311, 1484, 1545, 1561
Tru9I TTAA 6 cut(s) 1089, 1106, 1311, 1484, 1545, 1561
TscAI CASTG 2 cut(s) 241, 264
TseFI GTSAC 2 cut(s) 82, 136
TseI GCWGC 1 cut(s) 1126
Tsp45I GTSAC 2 cut(s) 82, 136
TspDTI ATGAA 6 cut(s) 40, 593, 619, 754, 805, 1455
TspGWI ACGGA 3 cut(s) 836, 885, 1034
TspRI CASTG 2 cut(s) 241, 264
Tth111I GACNNNGTC 1 cut(s) 326
Van91I CCANNNNNTGG 1 cut(s) 1273
VpaK11BI GGWCC 5 cut(s) 202, 363, 731, 1233, 1535
XagI CCTNNNNNAGG 2 cut(s) 826, 848
XapI RAATTY 1 cut(s) 562
XcmI CCANNNNNNNNNTGG 1 cut(s) 910
XmiI GTMKAC 1 cut(s) 801
XmnI GAANNNNTTC 2 cut(s) 425, 626
XspI CTAG 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.