Rh3BG200100

PAN domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Forward (+)
17815151 .. 17817767
2617 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG200100.1

Sequence Viewer

Length: 1482 bp
ATGGAGACTCATTTCATCAACTCAGTAACTCGTCTACGTGCAACTCAGCTCCTTCTCTGCACACTCGCTATATTACTCTTCTCACCCACCACCACCCTATCAGAGCTTCCCAGAGGCTTCAAGGCCACTCCCGACTCCTCAACCCAAACCTTCCAACCTCTCCTCTCCGACTCCACTGGCAATTTCTCCCTCGGTTTTCTCCGAGTCAATAAAACCCAGCTCGCCCTCGCCGTCCTCCACGTCCCGTCATCCGAGCCCTTCTGGCTCGCCAACCCGGCCCAACTCGCCCGCTGGTCCGACCGTACCCACCTCACTTTCAATGGCAGTCTCGTCCTTTCCGATCCTCAGACAAGGACATATTGGTCAACTCACACCGATGCTGATCATGTTATCCTCCTCAACAATTCAAACTTGCTAATACAGAGTGCCAACCAGAACGAAGCTCCAGCATGGCAGAGTTTCGACTTTCCCACAAATACCCTCGTCGAAAACCAGAATTTCACATCTAAAATGGTTCTGATTTCCTCCAACGGACTGTACTCGATGCGATTAGGGCCCGACTTCATCGGCCTCTACGCGAATTTCAATGAAGGCTCGGACCAGATTTATCTCCGGCACAAAGCAATGGAAGCCAAAACCGATATAGTCGAGAATAAAGGCCCCATTTACGCGCAGATAAACCCGGATCGGTACCTCGGTATGTACCAAACGGGTAACCCGTTACCGGCCGACGTTCAAAAGTTCAACAGCTATCAGACACCCATCACCGGCTTCCTCCGGGTCCGGTTAGAACCCGACGGGAACTTAGTCGGGTACTTCTGGGACGGGTCGAAGTGGGTTTTGGACTACCGGGCGATTTCTCAAACCTGCGAGCTTCCGAGTGCGTGCGGTTCGTACGGGTTGTGTACAGCCGGAAATGGCTGCTCGTGTTTGGATAACAGGACGGAGTTTGCCTCCGGCGAGTGCTTCGCGGCGCAGTCCGGTGACTTCTGCAGCGACGGAATCCCGAGAAATAATTTCTGGGTTTTGAGGAGGAACGGGGTTGAGCCGCCGTACAAGGAGTTGATGGGGTACCAAACGACGTCGTCGCTGGCGCAGTGCGAGAGGCTTTGTGAAAGGAACTGTAGCTGTTGGGGCGCGGTTTTTAATAACGCATCCGGGTTTTGTTACATGATGGACTACCCGATCCAAACCCTAGTGGGTGTGGGGGATGAGACCAAGATGGGGTATTTTAAGGTGCGGGAGGGTGCAGGGAGGAAGAAAATGAATGTGGGTGTTGGGGTTGGGATTGGTGTGATGTGTGGGGTGGTTTTGATTTTGGTGGGGATTGTTGGGGTTTGGAGGTTTAGGGTTTGGAAGAGGAAGAGGGGAGGAGGAGCAGTAAAGAGCCGGTTCATGGAGCAATACGGCGGCGTTTCGCCCGGCCCGTATAAGGATCTTGGATCGGCAAGCTTTAGGTCAATTGAGATGGGGAGTACATAG

Protein Analysis

493

Amino Acids

54.59

Weight (kDa)

8.13

Isoelectric Point (pI)

34.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 88 - 173 1.9e-11 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013446)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 361
AatII GACGTC 1 cut(s) 1085
Acc36I ACCTGC 1 cut(s) 875
Acc65I GGTACC 2 cut(s) 690, 1071
AccB1I GGYRCC 2 cut(s) 690, 1071
AccI GTMKAC 1 cut(s) 34
AccII CGCG 4 cut(s) 578, 671, 971, 1139
AciI CCGC 7 cut(s) 289, 888, 971, 1049, 1139, 1240, 1410
AclWI GGATC 5 cut(s) 335, 693, 1180, 1443, 1450
AcoI YGGCCR 1 cut(s) 726
AcsI RAATTY 2 cut(s) 496, 580
AcyI GRCGYC 1 cut(s) 1082
AfiI CCNNNNNNNGG 5 cut(s) 724, 767, 1224, 1396, 1432
AgsI TTSAA 6 cut(s) 121, 319, 408, 586, 737, 745
AjiI CACGTC 1 cut(s) 241
AjuI GAANNNNNNNTTGG 2 cut(s) 824, 856
AluBI AGCT 8 cut(s) 49, 106, 220, 443, 750, 874, 1128, 1452
AluI AGCT 8 cut(s) 49, 106, 220, 443, 750, 874, 1128, 1452
Alw26I GTCTC 2 cut(s) 332, 1208
AlwI GGATC 5 cut(s) 335, 693, 1180, 1443, 1450
Ama87I CYCGRG 1 cut(s) 1006
AoxI GGCC 7 cut(s) 123, 276, 554, 568, 658, 726, 1423
ApaI GGGCCC 1 cut(s) 558
ApeKI GCWGC 2 cut(s) 921, 993
ApoI RAATTY 2 cut(s) 496, 580
Asp718I GGTACC 2 cut(s) 690, 1071
AspLEI GCGC 4 cut(s) 673, 976, 1096, 1139
AspS9I GGNCC 8 cut(s) 277, 294, 554, 555, 598, 659, 781, 1424
AsuC2I CCSGG 6 cut(s) 275, 683, 779, 851, 1159, 1422
AsuHPI GGTGA 3 cut(s) 75, 757, 995
AvaI CYCGRG 1 cut(s) 1006
AvaII GGWCC 3 cut(s) 294, 598, 781
BaeGI GKGCMC 1 cut(s) 558
BaeI ACNNNNGTAYC 2 cut(s) 682, 715
BanI GGYRCC 2 cut(s) 690, 1071
BanII GRGCYC 2 cut(s) 258, 558
BauI CACGAG 1 cut(s) 925
BbvI GCAGC 2 cut(s) 908, 1005
BccI CCATC 5 cut(s) 770, 1060, 1168, 1216, 1462
BceAI ACGGC 3 cut(s) 215, 1036, 1423
BclI TGATCA 1 cut(s) 382
BcnI CCSGG 6 cut(s) 275, 683, 779, 851, 1159, 1422
BcoDI GTCTC 2 cut(s) 332, 1208
BfaI CTAG 1 cut(s) 1196
BfmI CTRYAG 2 cut(s) 991, 1123
BfuAI ACCTGC 1 cut(s) 875
BglI GCCNNNNNGGC 2 cut(s) 262, 275
BisI GCNGC 5 cut(s) 922, 972, 994, 1049, 1411
BlsI GCNGC 5 cut(s) 923, 973, 995, 1050, 1412
Bme1390I CCNGG 6 cut(s) 275, 683, 779, 851, 1159, 1422
Bme18I GGWCC 3 cut(s) 294, 598, 781
BmeT110I CYCGRG 1 cut(s) 1006
BmgBI CACGTC 1 cut(s) 241
BmgT120I GGNCC 8 cut(s) 277, 294, 554, 555, 598, 659, 781, 1424
BmiI GGNNCC 5 cut(s) 556, 661, 692, 782, 1073
BmrFI CCNGG 6 cut(s) 275, 683, 779, 851, 1159, 1422
BmsI GCATC 3 cut(s) 367, 534, 1163
BplI GAGNNNNNCTC 2 cut(s) 938, 970
BpmI CTGGAG 1 cut(s) 429
BpuMI CCSGG 6 cut(s) 275, 683, 779, 851, 1159, 1422
BsaAI YACGTR 1 cut(s) 38
BsaBI GATNNNNATC 1 cut(s) 381
BsaHI GRCGYC 1 cut(s) 1082
BsaI GGTCTC 1 cut(s) 1208
BsaJI CCNNGG 2 cut(s) 190, 694
BsaWI WCCGGW 2 cut(s) 783, 980
BsaXI ACNNNNNCTCC 2 cut(s) 1365, 1395
Bsc4I CCNNNNNNNGG 5 cut(s) 724, 767, 1224, 1396, 1432
Bse118I RCCGGY 3 cut(s) 724, 767, 1389
Bse1I ACTGG 1 cut(s) 181
Bse3DI GCAATG 1 cut(s) 630
Bse8I GATNNNNATC 1 cut(s) 381
BseDI CCNNGG 2 cut(s) 190, 694
BseGI GGATG 3 cut(s) 248, 1154, 1216
BseJI GATNNNNATC 1 cut(s) 381
BseLI CCNNNNNNNGG 5 cut(s) 724, 767, 1224, 1396, 1432
BseMI GCAATG 1 cut(s) 630
BseMII CTCAG 3 cut(s) 36, 59, 359
BseNI ACTGG 1 cut(s) 181
BseRI GAGGAG 6 cut(s) 127, 152, 386, 1045, 1386, 1389
BseSI GKGCMC 1 cut(s) 558
BseX3I CGGCCG 1 cut(s) 726
BseXI GCAGC 2 cut(s) 908, 1005
BseYI CCCAGC 1 cut(s) 216
BsgI GTGCAG 2 cut(s) 43, 1269
Bsh1236I CGCG 4 cut(s) 578, 671, 971, 1139
Bsh1285I CGRYCG 2 cut(s) 301, 729
BshFI GGCC 7 cut(s) 125, 278, 556, 570, 660, 728, 1425
BshNI GGYRCC 2 cut(s) 690, 1071
BsiEI CGRYCG 2 cut(s) 301, 729
BsiHKCI CYCGRG 1 cut(s) 1006
BsiWI CGTACG 1 cut(s) 894
BslFI GGGAC 2 cut(s) 227, 836
BslI CCNNNNNNNGG 5 cut(s) 724, 767, 1224, 1396, 1432
BsmAI GTCTC 2 cut(s) 332, 1208
BsmFI GGGAC 2 cut(s) 227, 836
BsnI GGCC 7 cut(s) 125, 278, 556, 570, 660, 728, 1425
Bso31I GGTCTC 1 cut(s) 1208
BsoBI CYCGRG 1 cut(s) 1006
Bsp120I GGGCCC 1 cut(s) 554
Bsp1286I GDGCHC 2 cut(s) 258, 558
Bsp1407I TGTACA 1 cut(s) 905
Bsp143I GATC 6 cut(s) 340, 382, 685, 1185, 1435, 1442
BspACI CCGC 7 cut(s) 289, 888, 971, 1049, 1139, 1240, 1410
BspANI GGCC 7 cut(s) 125, 278, 556, 570, 660, 728, 1425
BspCNI CTCAG 3 cut(s) 35, 58, 358
BspFNI CGCG 4 cut(s) 578, 671, 971, 1139
BspLI GGNNCC 5 cut(s) 556, 661, 692, 782, 1073
BspMAI CTGCAG 1 cut(s) 995
BspMI ACCTGC 1 cut(s) 875
BspPI GGATC 5 cut(s) 335, 693, 1180, 1443, 1450
BspT107I GGYRCC 2 cut(s) 690, 1071
BspTNI GGTCTC 1 cut(s) 1208
BsrDI GCAATG 1 cut(s) 630
BsrFI RCCGGY 3 cut(s) 724, 767, 1389
BsrGI TGTACA 1 cut(s) 905
BsrI ACTGG 1 cut(s) 181
BssAI RCCGGY 3 cut(s) 724, 767, 1389
BssECI CCNNGG 2 cut(s) 190, 694
BssMI GATC 6 cut(s) 340, 382, 685, 1185, 1435, 1442
BssNI GRCGYC 1 cut(s) 1082
BssSI CACGAG 1 cut(s) 925
Bst2BI CACGAG 1 cut(s) 925
Bst4CI ACNGT 3 cut(s) 302, 537, 1124
Bst6I CTCTTC 3 cut(s) 83, 1352, 1358
BstACI GRCGYC 1 cut(s) 1082
BstAUI TGTACA 1 cut(s) 905
BstBAI YACGTR 1 cut(s) 38
BstC8I GCNNGC 7 cut(s) 222, 267, 289, 872, 886, 1092, 1450
BstDEI CTNAG 4 cut(s) 22, 45, 345, 805
BstEII GGTNACC 1 cut(s) 713
BstF5I GGATG 3 cut(s) 248, 1154, 1216
BstFNI CGCG 4 cut(s) 578, 671, 971, 1139
BstHHI GCGC 4 cut(s) 673, 976, 1096, 1139
BstKTI GATC 6 cut(s) 343, 385, 688, 1188, 1438, 1445
BstMAI GTCTC 2 cut(s) 332, 1208
BstMBI GATC 6 cut(s) 340, 382, 685, 1185, 1435, 1442
BstMCI CGRYCG 2 cut(s) 301, 729
BstMWI GCNNNNNNNGC 6 cut(s) 262, 275, 284, 553, 629, 1134
BstPI GGTNACC 1 cut(s) 713
BstSCI CCNGG 6 cut(s) 273, 681, 777, 849, 1157, 1420
BstSFI CTRYAG 2 cut(s) 991, 1123
BstSLI GKGCMC 1 cut(s) 558
BstUI CGCG 4 cut(s) 578, 671, 971, 1139
BstV1I GCAGC 2 cut(s) 908, 1005
BstX2I RGATCY 1 cut(s) 1435
BstYI RGATCY 1 cut(s) 1435
BstZI CGGCCG 1 cut(s) 726
BsuRI GGCC 7 cut(s) 125, 278, 556, 570, 660, 728, 1425
BtrI CACGTC 1 cut(s) 241
BtsCI GGATG 3 cut(s) 248, 1154, 1216
BtsI GCAGTG 1 cut(s) 1103
BtsIMutI CAGTG 2 cut(s) 174, 1103
BveI ACCTGC 1 cut(s) 875
Cac8I GCNNGC 7 cut(s) 222, 267, 289, 872, 886, 1092, 1450
CfoI GCGC 4 cut(s) 673, 976, 1096, 1139
Cfr10I RCCGGY 3 cut(s) 724, 767, 1389
Cfr13I GGNCC 8 cut(s) 277, 294, 554, 555, 598, 659, 781, 1424
CviAII CATG 4 cut(s) 386, 450, 1171, 1396
DdeI CTNAG 4 cut(s) 22, 45, 345, 805
DpnI GATC 6 cut(s) 342, 384, 687, 1187, 1437, 1444
DpnII GATC 6 cut(s) 340, 382, 685, 1185, 1435, 1442
DrdI GACNNNNNNGTC 1 cut(s) 361
DseDI GACNNNNNNGTC 1 cut(s) 361
EaeI YGGCCR 1 cut(s) 726
EagI CGGCCG 1 cut(s) 726
Eam1104I CTCTTC 3 cut(s) 83, 1352, 1358
EarI CTCTTC 3 cut(s) 83, 1352, 1358
EclXI CGGCCG 1 cut(s) 726
Eco24I GRGCYC 2 cut(s) 258, 558
Eco31I GGTCTC 1 cut(s) 1208
Eco47I GGWCC 3 cut(s) 294, 598, 781
Eco52I CGGCCG 1 cut(s) 726
Eco88I CYCGRG 1 cut(s) 1006
Eco91I GGTNACC 1 cut(s) 713
EcoO109I RGGNCCY 2 cut(s) 554, 659
EcoO65I GGTNACC 1 cut(s) 713
EcoT38I GRGCYC 2 cut(s) 258, 558
FaeI CATG 4 cut(s) 389, 453, 1174, 1399
FaqI GGGAC 2 cut(s) 227, 836
FatI CATG 4 cut(s) 385, 449, 1170, 1395
FauI CCCGC 2 cut(s) 296, 1233
FbaI TGATCA 1 cut(s) 382
FblI GTMKAC 1 cut(s) 34
Fnu4HI GCNGC 5 cut(s) 922, 972, 994, 1049, 1411
FokI GGATG 3 cut(s) 235, 1141, 1223
FriOI GRGCYC 2 cut(s) 258, 558
Fsp4HI GCNGC 5 cut(s) 922, 972, 994, 1049, 1411
FspBI CTAG 1 cut(s) 1196
GlaI GCGC 4 cut(s) 672, 975, 1095, 1138
GluI GCNGC 5 cut(s) 922, 972, 994, 1049, 1411
GsaI CCCAGC 1 cut(s) 220
GsuI CTGGAG 1 cut(s) 429
HaeIII GGCC 7 cut(s) 125, 278, 556, 570, 660, 728, 1425
HhaI GCGC 4 cut(s) 673, 976, 1096, 1139
Hin1I GRCGYC 1 cut(s) 1082
Hin1II CATG 4 cut(s) 389, 453, 1174, 1399
Hin6I GCGC 4 cut(s) 671, 974, 1094, 1137
HinP1I GCGC 4 cut(s) 671, 974, 1094, 1137
HincII GTYRAC 1 cut(s) 366
HindII GTYRAC 1 cut(s) 366
HindIII AAGCTT 1 cut(s) 1450
HinfI GANTC 5 cut(s) 7, 134, 170, 204, 1002
HphI GGTGA 3 cut(s) 75, 757, 995
Hpy166II GTNNAC 3 cut(s) 35, 366, 906
Hpy188III TCNNGA 3 cut(s) 131, 649, 1006
Hpy8I GTNNAC 3 cut(s) 35, 366, 906
Hpy99I CGWCG 7 cut(s) 488, 734, 800, 1001, 1084, 1087, 1090
HpyAV CCTTC 4 cut(s) 62, 160, 268, 584
HpyCH4III ACNGT 3 cut(s) 302, 537, 1124
HpyCH4IV ACGT 4 cut(s) 37, 240, 732, 1082
HpyCH4V TGCA 4 cut(s) 41, 60, 993, 1250
HpyF10VI GCNNNNNNNGC 6 cut(s) 262, 275, 284, 553, 629, 1134
HpyF3I CTNAG 4 cut(s) 22, 45, 345, 805
HpySE526I ACGT 4 cut(s) 37, 240, 732, 1082
Hsp92I GRCGYC 1 cut(s) 1082
Hsp92II CATG 4 cut(s) 389, 453, 1174, 1399
HspAI GCGC 4 cut(s) 671, 974, 1094, 1137
KpnI GGTACC 2 cut(s) 694, 1075
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 6 cut(s) 340, 382, 685, 1185, 1435, 1442
LmnI GCTCC 4 cut(s) 54, 448, 1376, 1399
Lsp1109I GCAGC 2 cut(s) 908, 1005
LweI GCATC 3 cut(s) 367, 534, 1163
MaeI CTAG 1 cut(s) 1196
MaeII ACGT 4 cut(s) 37, 240, 732, 1082
MaeIII GTNAC 5 cut(s) 25, 713, 720, 983, 1166
MalI GATC 6 cut(s) 342, 384, 687, 1187, 1437, 1444
MboI GATC 6 cut(s) 340, 382, 685, 1185, 1435, 1442
MboII GAAGA 4 cut(s) 70, 1270, 1369, 1375
MfeI CAATTG 1 cut(s) 1461
MflI RGATCY 1 cut(s) 1435
MhlI GDGCHC 2 cut(s) 258, 558
MluCI AATT 6 cut(s) 181, 403, 496, 580, 1015, 1461
MlyI GAGTC 3 cut(s) 128, 164, 213
MmeI TCCRAC 4 cut(s) 178, 192, 321, 552
MseI TTAA 2 cut(s) 1146, 1233
MslI CAYNNNNRTG 1 cut(s) 375
MspA1I CMGCKG 1 cut(s) 291
MspR9I CCNGG 6 cut(s) 275, 683, 779, 851, 1159, 1422
MunI CAATTG 1 cut(s) 1461
MvnI CGCG 4 cut(s) 578, 671, 971, 1139
MwoI GCNNNNNNNGC 6 cut(s) 262, 275, 284, 553, 629, 1134
NciI CCSGG 6 cut(s) 275, 683, 779, 851, 1159, 1422
NdeII GATC 6 cut(s) 340, 382, 685, 1185, 1435, 1442
NlaIII CATG 4 cut(s) 389, 453, 1174, 1399
NlaIV GGNNCC 5 cut(s) 556, 661, 692, 782, 1073
NmuCI GTSAC 1 cut(s) 983
PcsI WCGNNNNNNNCGW 4 cut(s) 228, 336, 716, 1424
PfeI GAWTC 1 cut(s) 1002
Pfl23II CGTACG 1 cut(s) 894
PflFI GACNNNGTC 1 cut(s) 1084
PkrI GCNGC 5 cut(s) 923, 973, 995, 1050, 1412
PleI GAGTC 3 cut(s) 128, 164, 212
PpsI GAGTC 3 cut(s) 128, 164, 212
Ppu21I YACGTR 1 cut(s) 38
PspEI GGTNACC 1 cut(s) 713
PspFI CCCAGC 1 cut(s) 216
PspLI CGTACG 1 cut(s) 894
PspN4I GGNNCC 5 cut(s) 556, 661, 692, 782, 1073
PspOMI GGGCCC 1 cut(s) 554
PspPI GGNCC 8 cut(s) 277, 294, 554, 555, 598, 659, 781, 1424
PstI CTGCAG 1 cut(s) 995
PsuI RGATCY 1 cut(s) 1435
PsyI GACNNNGTC 1 cut(s) 1084
RseI CAYNNNNRTG 1 cut(s) 375
SaqAI TTAA 2 cut(s) 1146, 1233
SatI GCNGC 5 cut(s) 922, 972, 994, 1049, 1411
Sau3AI GATC 6 cut(s) 340, 382, 685, 1185, 1435, 1442
Sau96I GGNCC 8 cut(s) 277, 294, 554, 555, 598, 659, 781, 1424
SchI GAGTC 3 cut(s) 128, 164, 213
ScrFI CCNGG 6 cut(s) 275, 683, 779, 851, 1159, 1422
SduI GDGCHC 2 cut(s) 258, 558
SfaNI GCATC 3 cut(s) 367, 534, 1163
SfcI CTRYAG 2 cut(s) 991, 1123
SinI GGWCC 3 cut(s) 294, 598, 781
SmiMI CAYNNNNRTG 1 cut(s) 375
Sse9I AATT 6 cut(s) 181, 403, 496, 580, 1015, 1461
SsiI CCGC 7 cut(s) 289, 888, 971, 1049, 1139, 1240, 1410
SspMI CTAG 1 cut(s) 1196
StyD4I CCNGG 6 cut(s) 273, 681, 777, 849, 1157, 1420
TaaI ACNGT 3 cut(s) 302, 537, 1124
TaiI ACGT 4 cut(s) 40, 243, 735, 1085
TaqI TCGA 5 cut(s) 462, 486, 542, 648, 830
TasI AATT 6 cut(s) 181, 403, 496, 580, 1015, 1461
TatI WGTACW 3 cut(s) 537, 905, 1475
TauI GCSGC 3 cut(s) 974, 1051, 1413
TfiI GAWTC 1 cut(s) 1002
Tru1I TTAA 2 cut(s) 1146, 1233
Tru9I TTAA 2 cut(s) 1146, 1233
TscAI CASTG 2 cut(s) 181, 1103
TseFI GTSAC 1 cut(s) 983
TseI GCWGC 2 cut(s) 921, 993
Tsp45I GTSAC 1 cut(s) 983
TspDTI ATGAA 5 cut(s) 4, 553, 603, 1280, 1384
TspGWI ACGGA 3 cut(s) 546, 959, 1014
TspRI CASTG 2 cut(s) 181, 1103
Tth111I GACNNNGTC 1 cut(s) 1084
VpaK11BI GGWCC 3 cut(s) 294, 598, 781
XapI RAATTY 2 cut(s) 496, 580
XmiI GTMKAC 1 cut(s) 34
XspI CTAG 1 cut(s) 1196
ZraI GACGTC 1 cut(s) 1083
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.