Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0013446

Physical Location & Seq

Genomic Coordinates Forward (+)

1759639 .. 1760430

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1018400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTACCAAACCGGGAACCCAACTTCGGTCGACATCCAAGCGTTCATGACCTTTCCAAGGCTAATCAACGGCCTCCGTAAGGTCCAGTTGGAAGCGGACAGAAACCTCAAGGCGTATTACTGGGACGGTTCCAACTGGGTTTTGGATTTCCAGACGATTGCTGCCACGTGCGAGCTTCCCAGTCCATGTTGTTCGTTCGGTTTGTGTAGGGCCGGGAATGGTTCGTGTTCGTGTTTGAATAACCAAACGGAGTTCCATTCCGGTGAGTGTTTTCCGGTTCAAACCGGCGACTTCTGCGGTTCCGGATGGCGGGAAATTAAAAGCTTCCGGGTTTTAAGGAAGAACGCCATGGAGCCGCCGTACAAGGAGTTGATGGAGTATAAAACGATGTCGTCTTATGGTGAATGTGAAGGAACTTGTGAAAGGAACTGTAGCTGTTGGGGCGCGGTGTACAATAACGGGTCCGGGTTTTTTTACTTGATGGATTACCCGATCCAGAGTTTGGTGGGCGTTGGGGATGAGAGTAAGATGGGTTATTTTAAGGTGCGGGAGGGTGCAGGGAGGAAGAAAATAAATGTGGGTGTGGGGATTGGGATTGGGGTGGTTTGTGTGGCGATTTTGATATTTGTTGGGGTGGTGAGGGTTTGGAGGTTTAGGGTGTGGAAAAGGAAGAGAGGAGGAAGCGGGGGGAAGAGGTTCATGGGTCAAGATGGTGGGGCTTCGCCCGGCCCGTACAAGGATCTCGGGTCCGCAAGCTTTAGGTCCATTGAGATGGGTAGGCAAAATGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0012505 GO:0016020 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 PAN_2 S_locus_glycop

Protein Analysis

264

Amino Acids

29.12

Weight (kDa)

8.94

Isoelectric Point (pI)

35.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03700
fragaria_vesca	FvH4_6g17930
malus_domestica	MD12G1018400.v1.1 MD14G1016400.v1.1
prunus_persica	Prupe.7G116800_v2.0.a1
pyrus_communis	pycom12g01520 pycom14g01410
rosa_chinensis	RchiOBHm_Chr3g0472201
rosa_laevigata	RLG00000024098
rosa_multiflora	Rmu_sc0002532.1_g000034
rosa_roxburghii	Rroxscaffold_6G00409160
rosa_rugosa	Rorug03G0122800
rosa_samantha	Rh3AG175100 Rh3BG200100 Rh3CG191600 Rh3CG198900 Rh3DG174300
rosa_wichuraiana	Rw3G016620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	502
AccI	GTMKAC	1 cut(s)	30
AccII	CGCG	1 cut(s)	446
AccIII	TCCGGA	1 cut(s)	302
AciI	CCGC	8 cut(s)	95, 297, 310, 356, 446, 547, 684, 750
AclWI	GGATC	2 cut(s)	487, 747
AcvI	CACGTG	1 cut(s)	168
AfaI	GTAC	4 cut(s)	5, 362, 452, 734
AfiI	CCNNNNNNNGG	6 cut(s)	25, 57, 79, 309, 502, 736
AgsI	TTSAA	2 cut(s)	238, 281
AluBI	AGCT	4 cut(s)	175, 324, 435, 756
AluI	AGCT	4 cut(s)	175, 324, 435, 756
AlwI	GGATC	2 cut(s)	487, 747
Ama87I	CYCGRG	1 cut(s)	743
Aor13HI	TCCGGA	1 cut(s)	302
AoxI	GGCC	3 cut(s)	70, 210, 727
ApeKI	GCWGC	1 cut(s)	161
Asp700I	GAANNNNTTC	1 cut(s)	695
AspLEI	GCGC	1 cut(s)	446
AspS9I	GGNCC	6 cut(s)	82, 210, 462, 728, 747, 762
AsuC2I	CCSGG	5 cut(s)	13, 214, 329, 466, 726
AsuHPI	GGTGA	3 cut(s)	275, 413, 649
AvaI	CYCGRG	1 cut(s)	743
AvaII	GGWCC	4 cut(s)	82, 462, 747, 762
BbrPI	CACGTG	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	6 cut(s)	300, 367, 475, 523, 704, 766
BceAI	ACGGC	2 cut(s)	85, 343
BcnI	CCSGG	5 cut(s)	13, 214, 329, 466, 726
BfmI	CTRYAG	1 cut(s)	430
BisI	GCNGC	2 cut(s)	162, 356
BlsI	GCNGC	2 cut(s)	163, 357
Bme1390I	CCNGG	5 cut(s)	13, 214, 329, 466, 726
Bme18I	GGWCC	4 cut(s)	82, 462, 747, 762
BmeT110I	CYCGRG	1 cut(s)	743
BmgT120I	GGNCC	6 cut(s)	82, 210, 462, 728, 747, 762
BmiI	GGNNCC	6 cut(s)	17, 130, 301, 354, 463, 748
BmrFI	CCNGG	5 cut(s)	13, 214, 329, 466, 726
BmrI	ACTGGG	3 cut(s)	130, 145, 174
BmuI	ACTGGG	3 cut(s)	130, 145, 174
BpuEI	CTTGAG	1 cut(s)	92
BpuMI	CCSGG	5 cut(s)	13, 214, 329, 466, 726
BsaAI	YACGTR	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	56, 348
BsaWI	WCCGGW	3 cut(s)	260, 274, 302
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bsc4I	CCNNNNNNNGG	6 cut(s)	25, 57, 79, 309, 502, 736
Bse118I	RCCGGY	1 cut(s)	284
Bse1I	ACTGG	4 cut(s)	85, 125, 140, 180
BseAI	TCCGGA	1 cut(s)	302
BseDI	CCNNGG	2 cut(s)	56, 348
BseGI	GGATG	3 cut(s)	33, 311, 523
BseLI	CCNNNNNNNGG	6 cut(s)	25, 57, 79, 309, 502, 736
BseNI	ACTGG	4 cut(s)	85, 125, 140, 180
BseRI	GAGGAG	1 cut(s)	690
BseXI	GCAGC	1 cut(s)	148
BsgI	GTGCAG	1 cut(s)	576
Bsh1236I	CGCG	1 cut(s)	446
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	3 cut(s)	72, 212, 729
BsiEI	CGRYCG	1 cut(s)	30
BsiHKCI	CYCGRG	1 cut(s)	743
BsiSI	CCGG	9 cut(s)	12, 213, 261, 275, 285, 303, 328, 465, 726
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	6 cut(s)	25, 57, 79, 309, 502, 736
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	3 cut(s)	72, 212, 729
BsoBI	CYCGRG	1 cut(s)	743
Bsp13I	TCCGGA	1 cut(s)	302
Bsp1407I	TGTACA	1 cut(s)	450
Bsp143I	GATC	2 cut(s)	492, 739
Bsp19I	CCATGG	1 cut(s)	348
BspACI	CCGC	8 cut(s)	95, 297, 310, 356, 446, 547, 684, 750
BspANI	GGCC	3 cut(s)	72, 212, 729
BspEI	TCCGGA	1 cut(s)	302
BspFNI	CGCG	1 cut(s)	446
BspHI	TCATGA	1 cut(s)	45
BspLI	GGNNCC	6 cut(s)	17, 130, 301, 354, 463, 748
BspPI	GGATC	2 cut(s)	487, 747
BsrFI	RCCGGY	1 cut(s)	284
BsrGI	TGTACA	1 cut(s)	450
BsrI	ACTGG	4 cut(s)	85, 125, 140, 180
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	2 cut(s)	56, 348
BssMI	GATC	2 cut(s)	492, 739
BssT1I	CCWWGG	2 cut(s)	56, 348
Bst4CI	ACNGT	2 cut(s)	128, 431
Bst6I	CTCTTC	2 cut(s)	665, 686
BstAUI	TGTACA	1 cut(s)	450
BstBAI	YACGTR	1 cut(s)	168
BstC8I	GCNNGC	2 cut(s)	173, 754
BstDSI	CCRYGG	1 cut(s)	348
BstENI	CCTNNNNNAGG	2 cut(s)	55, 77
BstF5I	GGATG	3 cut(s)	33, 311, 523
BstFNI	CGCG	1 cut(s)	446
BstHHI	GCGC	1 cut(s)	446
BstKTI	GATC	2 cut(s)	495, 742
BstMBI	GATC	2 cut(s)	492, 739
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	2 cut(s)	294, 441
BstSCI	CCNGG	5 cut(s)	11, 212, 327, 464, 724
BstSFI	CTRYAG	1 cut(s)	430
BstUI	CGCG	1 cut(s)	446
BstV1I	GCAGC	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	739
BstXI	CCANNNNNNTGG	1 cut(s)	772
BstYI	RGATCY	1 cut(s)	739
BsuRI	GGCC	3 cut(s)	72, 212, 729
BtgI	CCRYGG	1 cut(s)	348
BtsCI	GGATG	3 cut(s)	33, 311, 523
Cac8I	GCNNGC	2 cut(s)	173, 754
CciI	TCATGA	1 cut(s)	45
CfoI	GCGC	1 cut(s)	446
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	6 cut(s)	82, 210, 462, 728, 747, 762
Csp6I	GTAC	4 cut(s)	4, 361, 451, 733
CviAII	CATG	4 cut(s)	46, 186, 349, 700
CviQI	GTAC	4 cut(s)	4, 361, 451, 733
DpnI	GATC	2 cut(s)	494, 741
DpnII	GATC	2 cut(s)	492, 739
Eam1104I	CTCTTC	2 cut(s)	665, 686
EarI	CTCTTC	2 cut(s)	665, 686
Eco130I	CCWWGG	2 cut(s)	56, 348
Eco47I	GGWCC	4 cut(s)	82, 462, 747, 762
Eco72I	CACGTG	1 cut(s)	168
Eco88I	CYCGRG	1 cut(s)	743
EcoNI	CCTNNNNNAGG	2 cut(s)	55, 77
EcoT14I	CCWWGG	2 cut(s)	56, 348
ErhI	CCWWGG	2 cut(s)	56, 348
FaeI	CATG	4 cut(s)	49, 189, 352, 703
FaiI	YATR	6 cut(s)	47, 187, 350, 381, 399, 701
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	4 cut(s)	45, 185, 348, 699
FauI	CCCGC	3 cut(s)	303, 540, 677
FblI	GTMKAC	1 cut(s)	30
Fnu4HI	GCNGC	2 cut(s)	162, 356
FokI	GGATG	3 cut(s)	20, 318, 530
Fsp4HI	GCNGC	2 cut(s)	162, 356
GlaI	GCGC	1 cut(s)	445
GluI	GCNGC	2 cut(s)	162, 356
HaeIII	GGCC	3 cut(s)	72, 212, 729
HapII	CCGG	9 cut(s)	12, 213, 261, 275, 285, 303, 328, 465, 726
HhaI	GCGC	1 cut(s)	446
Hin1II	CATG	4 cut(s)	49, 189, 352, 703
Hin6I	GCGC	1 cut(s)	444
HinP1I	GCGC	1 cut(s)	444
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HindIII	AAGCTT	2 cut(s)	322, 754
HpaII	CCGG	9 cut(s)	12, 213, 261, 275, 285, 303, 328, 465, 726
HphI	GGTGA	3 cut(s)	275, 413, 649
Hpy166II	GTNNAC	2 cut(s)	31, 451
Hpy188III	TCNNGA	5 cut(s)	46, 151, 303, 496, 707
Hpy8I	GTNNAC	2 cut(s)	31, 451
HpyAV	CCTTC	1 cut(s)	404
HpyCH4III	ACNGT	2 cut(s)	128, 431
HpyCH4IV	ACGT	1 cut(s)	167
HpyCH4V	TGCA	1 cut(s)	557
HpyF10VI	GCNNNNNNNGC	2 cut(s)	294, 441
HpySE526I	ACGT	1 cut(s)	167
Hsp92II	CATG	4 cut(s)	49, 189, 352, 703
HspAI	GCGC	1 cut(s)	444
Kpn2I	TCCGGA	1 cut(s)	302
Kzo9I	GATC	2 cut(s)	492, 739
LmnI	GCTCC	1 cut(s)	352
Lsp1109I	GCAGC	1 cut(s)	148
MaeII	ACGT	1 cut(s)	167
MalI	GATC	2 cut(s)	494, 741
MboI	GATC	2 cut(s)	492, 739
MboII	GAAGA	4 cut(s)	352, 577, 682, 703
MflI	RGATCY	1 cut(s)	739
MluCI	AATT	1 cut(s)	315
MmeI	TCCRAC	2 cut(s)	69, 156
MnlI	CCTC	9 cut(s)	83, 116, 544, 555, 633, 642, 668, 671, 687
MroI	TCCGGA	1 cut(s)	302
MroXI	GAANNNNTTC	1 cut(s)	695
MseI	TTAA	3 cut(s)	318, 335, 540
MslI	CAYNNNNRTG	2 cut(s)	261, 770
MspI	CCGG	9 cut(s)	12, 213, 261, 275, 285, 303, 328, 465, 726
MspR9I	CCNGG	5 cut(s)	13, 214, 329, 466, 726
MvnI	CGCG	1 cut(s)	446
MwoI	GCNNNNNNNGC	2 cut(s)	294, 441
NciI	CCSGG	5 cut(s)	13, 214, 329, 466, 726
NcoI	CCATGG	1 cut(s)	348
NdeII	GATC	2 cut(s)	492, 739
NlaIII	CATG	4 cut(s)	49, 189, 352, 703
NlaIV	GGNNCC	6 cut(s)	17, 130, 301, 354, 463, 748
PagI	TCATGA	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	1 cut(s)	728
PdmI	GAANNNNTTC	1 cut(s)	695
PflMI	CCANNNNNTGG	1 cut(s)	502
PkrI	GCNGC	2 cut(s)	163, 357
PmaCI	CACGTG	1 cut(s)	168
PmlI	CACGTG	1 cut(s)	168
Ppu21I	YACGTR	1 cut(s)	168
PspCI	CACGTG	1 cut(s)	168
PspN4I	GGNNCC	6 cut(s)	17, 130, 301, 354, 463, 748
PspPI	GGNCC	6 cut(s)	82, 210, 462, 728, 747, 762
PsuI	RGATCY	1 cut(s)	739
RsaI	GTAC	4 cut(s)	5, 362, 452, 734
RsaNI	GTAC	4 cut(s)	4, 361, 451, 733
RseI	CAYNNNNRTG	2 cut(s)	261, 770
SalI	GTCGAC	1 cut(s)	29
SaqAI	TTAA	3 cut(s)	318, 335, 540
SatI	GCNGC	2 cut(s)	162, 356
Sau3AI	GATC	2 cut(s)	492, 739
Sau96I	GGNCC	6 cut(s)	82, 210, 462, 728, 747, 762
ScrFI	CCNGG	5 cut(s)	13, 214, 329, 466, 726
SfcI	CTRYAG	1 cut(s)	430
SinI	GGWCC	4 cut(s)	82, 462, 747, 762
SmiMI	CAYNNNNRTG	2 cut(s)	261, 770
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	1 cut(s)	315
SsiI	CCGC	8 cut(s)	95, 297, 310, 356, 446, 547, 684, 750
StyD4I	CCNGG	5 cut(s)	11, 212, 327, 464, 724
StyI	CCWWGG	2 cut(s)	56, 348
TaaI	ACNGT	2 cut(s)	128, 431
TaiI	ACGT	1 cut(s)	170
TaqI	TCGA	1 cut(s)	30
TaqII	GACCGA	1 cut(s)	16
TasI	AATT	1 cut(s)	315
TatI	WGTACW	1 cut(s)	450
TauI	GCSGC	1 cut(s)	358
Tru1I	TTAA	3 cut(s)	318, 335, 540
Tru9I	TTAA	3 cut(s)	318, 335, 540
TseI	GCWGC	1 cut(s)	161
TspDTI	ATGAA	2 cut(s)	34, 688
TspGWI	ACGGA	2 cut(s)	65, 263
Van91I	CCANNNNNTGG	1 cut(s)	502
VpaK11BI	GGWCC	4 cut(s)	82, 462, 747, 762
XagI	CCTNNNNNAGG	2 cut(s)	55, 77
XcmI	CCANNNNNNNNNTGG	1 cut(s)	139
XmiI	GTMKAC	1 cut(s)	30
XmnI	GAANNNNTTC	1 cut(s)	695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.