AT5G06210

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015367
Physical Location & Seq
Forward (+)
1878449 .. 1879875
1427 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G06210.1

Sequence Viewer

Length: 441 bp
ATGGCGGCGCTCGCAAGGATCGGTGGCCGGCACCTGAAATCCGTCTGCTTAATAAACTCCTCCGCCTCATGTTTCTTCACACAACGCCGTGGTGTTGCTTCCAAGCTCTTTATTGGTGGATTATCGTTTTGCACTACAGAGCAAGGATTGTCTGAGGCATTTTCCAAATGTGGCCAAGTTGTTGAAGCACAAATAGTTATGGACAGAGTCTCTGACAGATCAAAAGGTTTCGGTTTCGTGACATTTGCTTCTGCTGACGAAGCTCAGAAAGCTTTGATGGAGTTCAACGGACAGCAATTAAACGGCCGGACGATATTTGTGGACTACGCAAAGGCGAAGCAGTCTCTTGGTGGTGGTGGTGGCTATCCAATAGCTAGAGGACCGCCTGATCCAGCCGTAATAGCTGCCACTAGAACAACCGAAACATCGAAAAGCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006417 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010494 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016043 GO:0017148 GO:0019219 GO:0019222 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032991 GO:0034063 GO:0034248 GO:0034249 GO:0034250 GO:0034622 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043487 GO:0043488 GO:0043489 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045182 GO:0045727 GO:0045934 GO:0047484 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070181 GO:0070925 GO:0071826 GO:0071840 GO:0080090 GO:0080134 GO:0097159 GO:1901000 GO:1901002 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

146

Amino Acids

15.42

Weight (kDa)

9.23

Isoelectric Point (pI)

37.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 36 - 105 1.6e-21 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015367)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06210
fragaria_vesca FvH4_6g19520 FvH4_6g19520
malus_domestica MD14G1031800.v1.1
prunus_persica Prupe.7G101000_v2.0.a1
pyrus_communis pycom14g02870
rosa_chinensis RchiOBHm_Chr3g0474861
rosa_laevigata RLG00000023889
rosa_multiflora Rmu_sc0011900.1_g000004
rosa_roxburghii Rroxscaffold_6G00406790
rosa_rugosa Rorug03G0144700
rosa_samantha Rh3AG194200 Rh3BG224100 Rh3CG219000 Rh3DG220000
rosa_wichuraiana Rw3G017690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 30
AciI CCGC 3 cut(s) 5, 63, 383
AclWI GGATC 2 cut(s) 26, 383
AcoI YGGCCR 3 cut(s) 25, 172, 304
AgsI TTSAA 2 cut(s) 185, 286
AluBI AGCT 5 cut(s) 106, 263, 272, 374, 404
AluI AGCT 5 cut(s) 106, 263, 272, 374, 404
Alw26I GTCTC 2 cut(s) 214, 348
AlwI GGATC 2 cut(s) 26, 383
AoxI GGCC 3 cut(s) 25, 172, 304
ApeKI GCWGC 1 cut(s) 404
AspLEI GCGC 1 cut(s) 10
AspS9I GGNCC 1 cut(s) 380
AvaII GGWCC 1 cut(s) 380
BalI TGGCCA 1 cut(s) 174
BanI GGYRCC 1 cut(s) 30
BbvI GCAGC 1 cut(s) 391
BccI CCATC 1 cut(s) 271
BceAI ACGGC 3 cut(s) 72, 319, 380
BcoDI GTCTC 2 cut(s) 214, 348
BfaI CTAG 2 cut(s) 375, 411
BfmI CTRYAG 1 cut(s) 135
BfoI RGCGCY 1 cut(s) 11
BisI GCNGC 2 cut(s) 6, 405
BlsI GCNGC 2 cut(s) 7, 406
Bme18I GGWCC 1 cut(s) 380
BmgT120I GGNCC 1 cut(s) 380
BmiI GGNNCC 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 88
Bse118I RCCGGY 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 88
BseMII CTCAG 2 cut(s) 144, 278
BseRI GAGGAG 1 cut(s) 49
BseX3I CGGCCG 1 cut(s) 304
BseXI GCAGC 1 cut(s) 391
Bsh1285I CGRYCG 1 cut(s) 307
BshFI GGCC 3 cut(s) 27, 174, 306
BshNI GGYRCC 1 cut(s) 30
BsiEI CGRYCG 1 cut(s) 307
BsiSI CCGG 2 cut(s) 28, 307
BsmAI GTCTC 2 cut(s) 214, 348
BsnI GGCC 3 cut(s) 27, 174, 306
Bsp143I GATC 3 cut(s) 18, 218, 388
BspACI CCGC 3 cut(s) 5, 63, 383
BspANI GGCC 3 cut(s) 27, 174, 306
BspCNI CTCAG 2 cut(s) 145, 277
BspLI GGNNCC 1 cut(s) 32
BspPI GGATC 2 cut(s) 26, 383
BspT107I GGYRCC 1 cut(s) 30
BsrFI RCCGGY 1 cut(s) 27
BssAI RCCGGY 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 3 cut(s) 18, 218, 388
BstC8I GCNNGC 2 cut(s) 12, 29
BstDEI CTNAG 2 cut(s) 153, 264
BstDSI CCRYGG 1 cut(s) 88
BstH2I RGCGCY 1 cut(s) 11
BstHHI GCGC 1 cut(s) 10
BstKTI GATC 3 cut(s) 21, 221, 391
BstMAI GTCTC 2 cut(s) 214, 348
BstMBI GATC 3 cut(s) 18, 218, 388
BstMCI CGRYCG 1 cut(s) 307
BstMWI GCNNNNNNNGC 4 cut(s) 11, 260, 269, 401
BstSFI CTRYAG 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 391
BstZI CGGCCG 1 cut(s) 304
BsuRI GGCC 3 cut(s) 27, 174, 306
BtgI CCRYGG 1 cut(s) 88
Cac8I GCNNGC 2 cut(s) 12, 29
CfoI GCGC 1 cut(s) 10
Cfr10I RCCGGY 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 380
CviAII CATG 1 cut(s) 69
DdeI CTNAG 2 cut(s) 153, 264
DpnI GATC 3 cut(s) 20, 220, 390
DpnII GATC 3 cut(s) 18, 218, 388
EaeI YGGCCR 3 cut(s) 25, 172, 304
EagI CGGCCG 1 cut(s) 304
EciI GGCGGA 1 cut(s) 52
EclXI CGGCCG 1 cut(s) 304
Eco47I GGWCC 1 cut(s) 380
Eco52I CGGCCG 1 cut(s) 304
FaeI CATG 1 cut(s) 72
FaiI YATR 2 cut(s) 70, 200
FatI CATG 1 cut(s) 68
Fnu4HI GCNGC 2 cut(s) 6, 405
Fsp4HI GCNGC 2 cut(s) 6, 405
FspBI CTAG 2 cut(s) 375, 411
GlaI GCGC 1 cut(s) 9
GluI GCNGC 2 cut(s) 6, 405
HaeII RGCGCY 1 cut(s) 11
HaeIII GGCC 3 cut(s) 27, 174, 306
HapII CCGG 2 cut(s) 28, 307
HhaI GCGC 1 cut(s) 10
Hin1II CATG 1 cut(s) 72
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HindIII AAGCTT 1 cut(s) 270
HinfI GANTC 1 cut(s) 207
HpaII CCGG 2 cut(s) 28, 307
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 3 cut(s) 154, 214, 267
Hpy188III TCNNGA 1 cut(s) 238
Hpy8I GTNNAC 1 cut(s) 322
HpyCH4V TGCA 1 cut(s) 132
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 260, 269, 401
HpyF3I CTNAG 2 cut(s) 153, 264
Hsp92II CATG 1 cut(s) 72
HspAI GCGC 1 cut(s) 8
KroI GCCGGC 1 cut(s) 27
KroNI GCCGGC 1 cut(s) 29
Kzo9I GATC 3 cut(s) 18, 218, 388
LpnPI CCDG 5 cut(s) 41, 47, 320, 399, 405
Lsp1109I GCAGC 1 cut(s) 391
MaeI CTAG 2 cut(s) 375, 411
MaeIII GTNAC 1 cut(s) 238
MalI GATC 3 cut(s) 20, 220, 390
MboI GATC 3 cut(s) 18, 218, 388
MboII GAAGA 1 cut(s) 67
MlsI TGGCCA 1 cut(s) 174
MluCI AATT 1 cut(s) 296
MluNI TGGCCA 1 cut(s) 174
MlyI GAGTC 1 cut(s) 216
MnlI CCTC 4 cut(s) 70, 76, 148, 371
Mox20I TGGCCA 1 cut(s) 174
MroNI GCCGGC 1 cut(s) 27
MscI TGGCCA 1 cut(s) 174
MseI TTAA 2 cut(s) 50, 299
Msp20I TGGCCA 1 cut(s) 174
MspI CCGG 2 cut(s) 28, 307
MwoI GCNNNNNNNGC 4 cut(s) 11, 260, 269, 401
NaeI GCCGGC 1 cut(s) 29
NdeII GATC 3 cut(s) 18, 218, 388
NgoMIV GCCGGC 1 cut(s) 27
NlaIII CATG 1 cut(s) 72
NlaIV GGNNCC 1 cut(s) 32
NmuCI GTSAC 1 cut(s) 238
PdiI GCCGGC 1 cut(s) 29
PflFI GACNNNGTC 1 cut(s) 206
PkrI GCNGC 2 cut(s) 7, 406
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
PspN4I GGNNCC 1 cut(s) 32
PspPI GGNCC 1 cut(s) 380
PsyI GACNNNGTC 1 cut(s) 206
SaqAI TTAA 2 cut(s) 50, 299
SatI GCNGC 2 cut(s) 6, 405
Sau3AI GATC 3 cut(s) 18, 218, 388
Sau96I GGNCC 1 cut(s) 380
SchI GAGTC 1 cut(s) 216
SetI ASST 7 cut(s) 36, 108, 229, 265, 274, 376, 406
SfcI CTRYAG 1 cut(s) 135
SinI GGWCC 1 cut(s) 380
Sse9I AATT 1 cut(s) 296
SsiI CCGC 3 cut(s) 5, 63, 383
SspMI CTAG 2 cut(s) 375, 411
TaqI TCGA 1 cut(s) 428
TasI AATT 1 cut(s) 296
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 2 cut(s) 50, 299
Tru9I TTAA 2 cut(s) 50, 299
TseFI GTSAC 1 cut(s) 238
TseI GCWGC 1 cut(s) 404
Tsp45I GTSAC 1 cut(s) 238
TspGWI ACGGA 2 cut(s) 31, 303
Tth111I GACNNNGTC 1 cut(s) 206
VpaK11BI GGWCC 1 cut(s) 380
XspI CTAG 2 cut(s) 375, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.