MD14G1031800.v1.1

Glycine-rich RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0015367
Physical Location & Seq
Forward (+)
2825429 .. 2827578
2150 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1031800.v1.1.491

Sequence Viewer

Length: 405 bp
ATGGCGATGCTTAGAACATTGGTGCACTCAAACCCTAAATTATCGTATTCCTCCTCCCTTCTTCTTCCTCCCGCTCTTCTGATTTCCTGCAGGGGAATCGCTACTAAGCTCTTCGTTGGCGGACTATCGTTTTACACCAATGAGAAGGGGTTATCTGAAGCGTTCTCTCAGTATGGACAAGTGATAGAAGCCCAAATTGTATCGGACAGAGTATCAGAAAGATCGAAAGGATTTGGATTCGTGACCTTTGCTTCAGAAGATGAAGCCCACAAAGCCTTGGAGGAGATGAATGGCAAGCCACTGAATGGACGCGTTATTTTTGTGGACTATGCAAAGCCGAGAACCAATTATGGCAGTGGAATGCCGATTGCAAGAGGACCCCCTGATTCGATAAAAGACGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006417 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010494 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016043 GO:0017148 GO:0019219 GO:0019222 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032991 GO:0034063 GO:0034248 GO:0034249 GO:0034250 GO:0034622 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043487 GO:0043488 GO:0043489 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045182 GO:0045727 GO:0045934 GO:0047484 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070181 GO:0070925 GO:0071826 GO:0071840 GO:0080090 GO:0080134 GO:0097159 GO:1901000 GO:1901002 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

135

Amino Acids

14.55

Weight (kDa)

8.73

Isoelectric Point (pI)

32.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 37 - 106 1.1e-23 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015367)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06210
fragaria_vesca FvH4_6g19520 FvH4_6g19520
malus_domestica MD14G1031800.v1.1
prunus_persica Prupe.7G101000_v2.0.a1
pyrus_communis pycom14g02870
rosa_chinensis RchiOBHm_Chr3g0474861
rosa_laevigata RLG00000023889
rosa_multiflora Rmu_sc0011900.1_g000004
rosa_roxburghii Rroxscaffold_6G00406790
rosa_rugosa Rorug03G0144700
rosa_samantha Rh3AG194200 Rh3BG224100 Rh3CG219000 Rh3DG220000
rosa_wichuraiana Rw3G017690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 305
AccBSI CCGCTC 1 cut(s) 74
AccII CGCG 1 cut(s) 312
AciI CCGC 2 cut(s) 72, 120
AcuI CTGAAG 2 cut(s) 177, 237
AfiI CCNNNNNNNGG 1 cut(s) 305
AflIII ACRYGT 1 cut(s) 310
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
Alw21I GWGCWC 1 cut(s) 27
Alw44I GTGCAC 1 cut(s) 23
ApaLI GTGCAC 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 377
AvaII GGWCC 1 cut(s) 377
BaeGI GKGCMC 1 cut(s) 27
Bbv12I GWGCWC 1 cut(s) 27
BcgI CGANNNNNNTGC 2 cut(s) 79, 113
BfmI CTRYAG 1 cut(s) 88
Bme18I GGWCC 1 cut(s) 377
BmgT120I GGNCC 1 cut(s) 377
BmiI GGNNCC 1 cut(s) 379
BsaJI CCNNGG 1 cut(s) 276
Bsc4I CCNNNNNNNGG 1 cut(s) 305
BseDI CCNNGG 1 cut(s) 276
BseLI CCNNNNNNNGG 1 cut(s) 305
BseMII CTCAG 1 cut(s) 182
BseRI GAGGAG 2 cut(s) 43, 296
BseSI GKGCMC 1 cut(s) 27
Bsh1236I CGCG 1 cut(s) 312
BsiHKAI GWGCWC 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 305
BsmI GAATGC 1 cut(s) 366
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 1 cut(s) 221
BspACI CCGC 2 cut(s) 72, 120
BspCNI CTCAG 1 cut(s) 181
BspFNI CGCG 1 cut(s) 312
BspLI GGNNCC 1 cut(s) 379
BspMAI CTGCAG 1 cut(s) 92
BspQI GCTCTTC 2 cut(s) 81, 116
BsrBI CCGCTC 1 cut(s) 74
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 1 cut(s) 221
BssT1I CCWWGG 1 cut(s) 276
Bst4CI ACNGT 1 cut(s) 401
Bst6I CTCTTC 2 cut(s) 81, 116
BstC8I GCNNGC 1 cut(s) 296
BstDEI CTNAG 3 cut(s) 11, 105, 168
BstFNI CGCG 1 cut(s) 312
BstKTI GATC 1 cut(s) 224
BstMBI GATC 1 cut(s) 221
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstSFI CTRYAG 1 cut(s) 88
BstSLI GKGCMC 1 cut(s) 27
BstUI CGCG 1 cut(s) 312
BtgZI GCGATG 1 cut(s) 20
BtsI GCAGTG 1 cut(s) 361
BtsIMutI CAGTG 2 cut(s) 299, 361
Cac8I GCNNGC 1 cut(s) 296
Cfr13I GGNCC 1 cut(s) 377
CseI GACGC 1 cut(s) 318
CviJI RGCY 6 cut(s) 109, 191, 266, 275, 298, 337
CviKI_1 RGCY 6 cut(s) 109, 191, 266, 275, 298, 337
DdeI CTNAG 3 cut(s) 11, 105, 168
DpnI GATC 1 cut(s) 223
DpnII GATC 1 cut(s) 221
Eam1104I CTCTTC 2 cut(s) 81, 116
EarI CTCTTC 2 cut(s) 81, 116
EciI GGCGGA 1 cut(s) 135
Eco130I CCWWGG 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 377
Eco57I CTGAAG 2 cut(s) 177, 237
EcoO109I RGGNCCY 1 cut(s) 377
EcoT14I CCWWGG 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 276
FaiI YATR 3 cut(s) 174, 330, 351
FauI CCCGC 1 cut(s) 79
HgaI GACGC 1 cut(s) 318
HinfI GANTC 3 cut(s) 96, 237, 386
Hpy166II GTNNAC 2 cut(s) 25, 325
Hpy188I TCNGA 5 cut(s) 81, 157, 205, 217, 256
Hpy188III TCNNGA 1 cut(s) 241
Hpy8I GTNNAC 2 cut(s) 25, 325
HpyAV CCTTC 2 cut(s) 68, 139
HpyCH4III ACNGT 1 cut(s) 401
HpyCH4V TGCA 4 cut(s) 25, 90, 332, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 3 cut(s) 11, 105, 168
Kzo9I GATC 1 cut(s) 221
LguI GCTCTTC 2 cut(s) 81, 116
LpnPI CCDG 3 cut(s) 76, 100, 396
MaeIII GTNAC 1 cut(s) 241
MalI GATC 1 cut(s) 223
MbiI CCGCTC 1 cut(s) 74
MboI GATC 1 cut(s) 221
MboII GAAGA 5 cut(s) 53, 56, 68, 103, 269
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 3 cut(s) 38, 195, 346
MluI ACGCGT 1 cut(s) 310
MnlI CCTC 5 cut(s) 61, 64, 78, 274, 368
Mva1269I GAATGC 1 cut(s) 366
MvnI CGCG 1 cut(s) 312
MwoI GCNNNNNNNGC 1 cut(s) 272
NdeII GATC 1 cut(s) 221
NlaIV GGNNCC 1 cut(s) 379
NmeAIII GCCGAG 1 cut(s) 363
NmuCI GTSAC 1 cut(s) 241
PciSI GCTCTTC 2 cut(s) 81, 116
PctI GAATGC 1 cut(s) 366
PfeI GAWTC 3 cut(s) 96, 237, 386
PflMI CCANNNNNTGG 1 cut(s) 305
PpuMI RGGWCCY 1 cut(s) 377
Psp5II RGGWCCY 1 cut(s) 377
PspN4I GGNNCC 1 cut(s) 379
PspPI GGNCC 1 cut(s) 377
PspPPI RGGWCCY 1 cut(s) 377
PstI CTGCAG 1 cut(s) 92
SapI GCTCTTC 2 cut(s) 81, 116
Sau3AI GATC 1 cut(s) 221
Sau96I GGNCC 1 cut(s) 377
SbfI CCTGCAGG 1 cut(s) 92
SdaI CCTGCAGG 1 cut(s) 92
SduI GDGCHC 1 cut(s) 27
SetI ASST 2 cut(s) 111, 248
SfcI CTRYAG 1 cut(s) 88
SinI GGWCC 1 cut(s) 377
Sse8387I CCTGCAGG 1 cut(s) 92
Sse9I AATT 3 cut(s) 38, 195, 346
SsiI CCGC 2 cut(s) 72, 120
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 1 cut(s) 401
TaqI TCGA 2 cut(s) 224, 389
TasI AATT 3 cut(s) 38, 195, 346
TfiI GAWTC 3 cut(s) 96, 237, 386
TscAI CASTG 2 cut(s) 306, 361
TseFI GTSAC 1 cut(s) 241
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 2 cut(s) 276, 302
TspRI CASTG 2 cut(s) 306, 361
Van91I CCANNNNNTGG 1 cut(s) 305
VneI GTGCAC 1 cut(s) 23
VpaK11BI GGWCC 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.